mRNA_P-canaliculata_contig10084.161.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10084.161.1
Unique NamemRNA_P-canaliculata_contig10084.161.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10084.161.1 vs. uniprot
Match: D7FUM4_ECTSI (HTH_OrfB_IS605 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUM4_ECTSI)

HSP 1 Score: 385 bits (988), Expect = 7.750e-129
Identity = 241/413 (58.35%), Postives = 270/413 (65.38%), Query Frame = 1 
Query:    7 SEQKQQLTSLTDFWKEPWTASTWGTCSSQNPAAQGLQPSSWMYTRHTAHDDHGDSTDFDFGSYSSDCTSFS-ASSSGIPSPGASPPTLRQRWSSSSNNGLVDYHHXXXXQQXXXXXXXXQELRHLHGAVRGVSSPPTAPT--------MAPPPGLSPERYGHPPL------------------NPSAHSVLAPSRVLSSRSVTSRSSSIDSESS-ALGLYGGSCTGAGATS-----AFQIAGYRTVELLPTAQQRQTLQKWFGVVRWTHNRAVDALRVDPSSSAAELRTAVAKAEAEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGESVMAEPIGTAAQNKALKYRTRKDRLEQVVLRADGFQFGIPYPEYFGYAPLASSAPIPDRVQTDAILVRSTERFYLCI 1146
            S ++QQ   L DFW+EPW   TW +  SQNPAAQGLQPS WMYT H    D   S DFD GS      SFS ASS   PSPG SPP    +W   S                       Q + H           P A T        M PPPGL+ ER+ HP                       + S+LA    + +RS TSRSSS++S++S AL LYGG+             AFQI GY+T+ELLPTAQQRQTLQKWFGVVRW HNRAVDALRVD S SA  LR AVA++E+EHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGE+VMAEP+GTAAQNKALKYRTRKDRLEQ+VLRADGFQ+GIPYP+YFGYAPLASS PIPDR+ +DAILVRSTERFYLCI
Sbjct:    2 STEQQQARGLDDFWQEPWAQDTWVSTISQNPAAQGLQPSGWMYTSHPGKQD---SLDFDLGS------SFSQASSEDPPSPG-SPPLNHGQWKRGSTASTAS----SCGSISVSGGAGHQPIEHXXXXXXXXXXAPIASTASLSSTLPMTPPPGLAHERFVHPAAAXXXXXXXXXXXXXXPHXXXXSQSLLA---TMGARSGTSRSSSVESDTSPALSLYGGAXXXXXXXXXXXPCAFQILGYQTLELLPTAQQRQTLQKWFGVVRWIHNRAVDALRVDSSVSATSLRAAVAESESEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAAAATGEAVMAEPLGTAAQNKALKYRTRKDRLEQIVLRADGFQYGIPYPDYFGYAPLASSVPIPDRLPSDAILVRSTERFYLCI 397
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10084.161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUM4_ECTSI7.750e-12958.35HTH_OrfB_IS605 domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10084contigP-canaliculata_contig10084:3094..7022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTransposase, putative, helix-turn-helix domain
Ec32 orthologEc-26_002150.1
Exons4
Model size1161
Cds size1161
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10084.161.1prot_P-canaliculata_contig10084.161.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10084 3094..7022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.9761171-CDS-P-canaliculata_contig10084:3093..32321622815581.9761171-CDS-P-canaliculata_contig10084:3093..3232Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10084 3094..3232 +
1693494149.5205624-CDS-P-canaliculata_contig10084:3093..32321693494149.5205624-CDS-P-canaliculata_contig10084:3093..3232Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10084 3094..3232 +
1622815581.998372-CDS-P-canaliculata_contig10084:4218..47661622815581.998372-CDS-P-canaliculata_contig10084:4218..4766Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10084 4219..4766 +
1693494149.5294724-CDS-P-canaliculata_contig10084:4218..47661693494149.5294724-CDS-P-canaliculata_contig10084:4218..4766Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10084 4219..4766 +
1622815582.0109074-CDS-P-canaliculata_contig10084:5468..57971622815582.0109074-CDS-P-canaliculata_contig10084:5468..5797Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10084 5469..5797 +
1693494149.5388079-CDS-P-canaliculata_contig10084:5468..57971693494149.5388079-CDS-P-canaliculata_contig10084:5468..5797Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10084 5469..5797 +
1622815582.0300467-CDS-P-canaliculata_contig10084:6877..70221622815582.0300467-CDS-P-canaliculata_contig10084:6877..7022Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10084 6878..7022 +
1693494149.5482159-CDS-P-canaliculata_contig10084:6877..70221693494149.5482159-CDS-P-canaliculata_contig10084:6877..7022Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10084 6878..7022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10084.161.1

>prot_P-canaliculata_contig10084.161.1 ID=prot_P-canaliculata_contig10084.161.1|Name=mRNA_P-canaliculata_contig10084.161.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=387bp
MTSEQKQQLTSLTDFWKEPWTASTWGTCSSQNPAAQGLQPSSWMYTRHTA
HDDHGDSTDFDFGSYSSDCTSFSASSSGIPSPGASPPTLRQRWSSSSNNG
LVDYHHHHHHQQHHQQHQQHQELRHLHGAVRGVSSPPTAPTMAPPPGLSP
ERYGHPPLNPSAHSVLAPSRVLSSRSVTSRSSSIDSESSALGLYGGSCTG
AGATSAFQIAGYRTVELLPTAQQRQTLQKWFGVVRWTHNRAVDALRVDPS
SSAAELRTAVAKAEAEHEWAAAVPLAIRDATVAQLVGALHLAQRSAEVAA
AATGESVMAEPIGTAAQNKALKYRTRKDRLEQVVLRADGFQFGIPYPEYF
GYAPLASSAPIPDRVQTDAILVRSTERFYLCIPDTA*
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mRNA from alignment at P-canaliculata_contig10084:3094..7022+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10084.161.1 ID=mRNA_P-canaliculata_contig10084.161.1|Name=mRNA_P-canaliculata_contig10084.161.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3929bp|location=Sequence derived from alignment at P-canaliculata_contig10084:3094..7022+ (Pelvetia canaliculata dioecious)
ATGACCTCTGAGCAAAAGCAGCAGCTGACGAGTCTCACGGACTTCTGGAA
GGAACCTTGGACGGCGTCTACTTGGGGAACATGTAGCAGTCAGAACCCCG
CCGCTCAAGGCCTCCAGCCCTCCTCGTGGATGTATACAAGTAAGTTTTTT
TCTTTTTCTTATTTTTTTTTAACCTGTCGTTGGGCTTGAAGGGGCTTTGC
CTTGAACCCCTGTTGTTTTAAATCGTGCACCGCGGACCTCTTTACTAGAC
TAGTAATAATCAAAACATTATTATTTTTTGGGGGGAAGGGGTCTAGCTTG
TTCTAAATCTGCTGCGGATTTTTATATTTATAAAATAGAAGCGAACGCGT
CGCCGAGTCTTCTTGTGCTTGTCCCTCTCCCGACCGGAGTGGTGGTGGTG
GAAGGACAGGAAGAAGGCGGAATAGAACAATGAATTCGGCATCCGTTTCA
TTTTTCGTTTTTCAAGATCACGTGCGTGTCGGGCCGCGCGTGTGTCCGGC
CGATACCCGAGGTCCTAAAAAGGGACCAGCCTTCTCGTTCAGAATCCCAA
CAGCATGCTCTGTCGAGACAATCAGTAACGCTGTGACGATGACTGCTCTG
GAGGGTTCATTTCGCGTTCGCCCTCATCCGCGGGGATTTTCTCGTCGGGC
GCGTCCACCCTTGATCTTTTGCGCTCCCTCTGCAGCCGACTCTATCATTC
ACTCACCGCGCGATCTCCTGTCCCGCCCTACGGCAGAATCTGACCCTTCA
CAAGTCACATCTGTGGCGCATGATATTGCTTGTTATTAAAAATAGTGTAA
TTGCATAAGTCTTGTAAACAAAGTCGAAGCGCTACTCCTCACTCTCCCCT
AACCTCTCTCGCCGCCTCCGGAGGTTCTCGCGTGGAAGTCGCGCCCCGAC
ACACACAAGAAATGCGCCAAACCCCAACCCTCGCTCGTAGCTTCTCTTTC
ACCTTCTCGACCAAGATAAGCAGTAGGAACATACATGCGTCACACCATCA
TAATACCAGTTCGAGACAAACCAATTGGGGTTTCGCTCGCCAGGAATCGT
CCTACAAACACACTGCGTCCCTCTCTCAACGCCCGCATGCTCTTTTCCCC
CCCCTCCTCTTTCCGTCGCTCACAGGGCACACCGCCCACGACGACCACGG
TGACAGCACTGACTTCGACTTCGGGTCGTACTCGAGCGACTGCACTTCGT
TTTCGGCGTCGTCTTCCGGAATACCGTCTCCGGGAGCATCGCCCCCCACT
CTCCGCCAACGTTGGTCGAGCTCAAGCAACAACGGACTGGTCGACTACCA
CCACCACCATCACCACCAGCAGCACCATCAACAGCATCAGCAGCATCAGG
AGCTACGTCACCTTCATGGTGCAGTTCGCGGGGTTTCATCGCCACCGACC
GCCCCGACGATGGCTCCCCCGCCGGGGCTCTCGCCCGAACGATACGGGCA
CCCCCCCCTCAACCCCTCCGCGCACTCAGTACTTGCGCCCTCGCGCGTGC
TCAGTAGTCGGTCGGTAACGAGCCGATCTTCAAGCATTGATTCCGAGAGC
TCGGCGCTTGGACTATACGGAGGTAGCTGCACGGGGGCGGGCGCTACTAG
CGCCTTCCAAATCGCCGGCTACCGGACCGTGGAACTGCTCCCGACGGCTC
AGCAGCGGCAAACACTCCAGAAGGTACGTAACATGCAGATCAAAAGGCAA
GGGGTGTTTTCTTCTCCCTTAGTACCATGAAGTATTTCGAGGTCAAAACA
AACGCATACAGTATAGTAGTGATTCTGCAATTAAGAAAAGTTAGAGCCGA
TATTTTCCTATTTCACACATGTACTTATGAAACGCTACATTTTGATCTGC
AGAACTGTTCATTGAAGGAGCACAACATCGAGATTATCTGCGAGCACACC
CAAAGAATGGTCTGAACCCGTGGCGAGTAGTGTCGAATGATAGGTCGTCT
CTTCCGTGGGTGGAACCGTTGTTCAACCATTCCGACTTTAAACACATGAG
CTTAGCACCGATGTGTTCAAACTGCTGAAGGAATGAAGCAAAGCAATTCG
ATGCGACAATCCAGTAGACCTTGGAGAAATAATCTGGATCCGCTCCGAGT
TGTTCCCGCTTCTCAACCTCAACACGCTTGATTTTTTTGCAAAGAACTTA
ATCGACTAGAATTCAATCGACGTTGAAGGTGGCCTTCTCTTAAAATCCAA
GTATACTCCACACCTTTCCACGAAGTTGAAAGTATAACATCTCCGACGAA
TCCATCTGCAATGCTTCACCCCTTTCTCTCTTCCTCTCTCTCTGATTCAT
GTCGTCCCTTCAACCTGCTCCCCCTCCGTCTCCCACCCTTATATTATCTG
CGGTGGCTTCCCTCGTTACAATCAGTGGTTTGGAGTCGTTCGCTGGACAC
ACAATCGCGCCGTCGATGCCCTTCGCGTCGATCCCAGCTCATCAGCCGCT
GAGCTCCGCACCGCCGTCGCCAAGGCTGAGGCCGAGCACGAGTGGGCGGC
TGCCGTGCCCCTCGCTATCCGCGACGCAACGGTGGCGCAGCTTGTGGGCG
CGCTGCACCTAGCCCAGCGGTCGGCGGAAGTGGCTGCTGCGGCCACGGGA
GAGAGCGTGATGGCGGAGCCTATCGGGACGGCGGCGCAGAACAAGGCGCT
CAAGTACCGCACGCGGAAGGACAGGCTAGAGCAAGTAGTTCTCAGGGCCG
ACGGGTGAGCACGCAGTTGTGGCTTTAGGAGAGGGTTTATCGGCTTGGAT
GTGCATTATTGACCCTCGCCTTTAGCCGTGGAGGCCTCCACAATCTTCCC
CACGATGTCAACGCGCTTCTGTTTTTAGCACCCTGTGACACAACGGTAAG
CTCCGCTGACTGCCTTTCGAACATTCTCCCGCTTTGATATCGTTGTGATT
TTTTAGAACCCCTTTCGTTCATGTGCTATCGCGGCTAAGATTGTGTTCAG
TGGCATCACTTGACCCGGTATTATTGTGTTGTGTTGAAGTTTTCCTCCTT
CGTGACCCCCAAAAGAGCAGAGACTGGCCTCTTCGTCATCCGGCCGCTGT
TCAGGTGTTGCCCGCCGTACGTGAGCCCCCGAACGTCGCAGTTCCTCCTT
CCGAAATAGAAGTTGGCGTTGAGAAGTGACATGCGCGAGGGAGGCTTTCA
TAGAAATATCTTTAGTGGCCTCATTTTGCGGTGTAGACGTGTATGGGAGT
CATTCCCACCCACTTTTGTGTGCCGGTATTAATCAATCGAGAATCCCCTC
GATAGTGTAATGTCTGCCCTTGGTGGCAAGAAGGAACACCCGCCACCATC
AGTTGATGTCGTCTGAAAGATGGCTCGCCGCAGTACACACAAAACAAAAA
CAAAAAACGTTTTATATTTTTGCGAGCCAAAAAACAATTGTTTAATCTCG
GATAACCTGTGACGGCGTTTCACTCTCGGGGGCAGTGGTTTTCTGTCAAA
GTTCGCGACTTTAAACGTTTCCGGATTCTTTAGGATTTGAGAAGCCACGT
TTTCCCGTTCCCCGAACTTCGTATGGCTTCTTAATGGGACCCCCGTATCG
TTGCATCGCCCCACGGATTGGGTTTTATAGTCAGAATCGAAACCTTTTCT
GTGGCACTCTCACATTTTCCAAGACCAGTAGCTCCACAATCCGGAACTCT
CGCTTACACGTCACACGTGCTACACGTGCCACGCGTGCGGTGACTCAATC
CTCCCTGTCGCTGATCGACACGTGATCCCACCGCTAATTTCCCTTCCCTT
CTCGCCTTGTTTGACAATTTACTGATGACCACAGGTTCCAGTTCGGGATA
CCTTACCCGGAGTACTTCGGCTACGCGCCGCTTGCCTCGTCCGCCCCTAT
TCCAGACCGGGTGCAGACCGACGCAATTCTCGTCCGTAGCACCGAGCGAT
TCTACCTCTGCATCCCGGACACGGCCTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig10084:3094..7022+

>mRNA_P-canaliculata_contig10084.161.1 ID=mRNA_P-canaliculata_contig10084.161.1|Name=mRNA_P-canaliculata_contig10084.161.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2322bp|location=Sequence derived from alignment at P-canaliculata_contig10084:3094..7022+ (Pelvetia canaliculata dioecious)
ATGACCTCTGAGCAAAAGCAGCAGCTGACGAGTCTCACGGACTTCTGGAA
GGAACCTTGGACGGCGTCTACTTGGGGAACATGTAGCAGTCAGAACCCCG
CCGCTCAAGGCCTCCAGCCCTCCTCGTGGATGTATACAAATGACCTCTGA
GCAAAAGCAGCAGCTGACGAGTCTCACGGACTTCTGGAAGGAACCTTGGA
CGGCGTCTACTTGGGGAACATGTAGCAGTCAGAACCCCGCCGCTCAAGGC
CTCCAGCCCTCCTCGTGGATGTATACAAGGCACACCGCCCACGACGACCA
CGGTGACAGCACTGACTTCGACTTCGGGTCGTACTCGAGCGACTGCACTT
CGTTTTCGGCGTCGTCTTCCGGAATACCGTCTCCGGGAGCATCGCCCCCC
ACTCTCCGCCAACGTTGGTCGAGCTCAAGCAACAACGGACTGGTCGACTA
CCACCACCACCATCACCACCAGCAGCACCATCAACAGCATCAGCAGCATC
AGGAGCTACGTCACCTTCATGGTGCAGTTCGCGGGGTTTCATCGCCACCG
ACCGCCCCGACGATGGCTCCCCCGCCGGGGCTCTCGCCCGAACGATACGG
GCACCCCCCCCTCAACCCCTCCGCGCACTCAGTACTTGCGCCCTCGCGCG
TGCTCAGTAGTCGGTCGGTAACGAGCCGATCTTCAAGCATTGATTCCGAG
AGCTCGGCGCTTGGACTATACGGAGGTAGCTGCACGGGGGCGGGCGCTAC
TAGCGCCTTCCAAATCGCCGGCTACCGGACCGTGGAACTGCTCCCGACGG
CTCAGCAGCGGCAAACACTCCAGAAGGGCACACCGCCCACGACGACCACG
GTGACAGCACTGACTTCGACTTCGGGTCGTACTCGAGCGACTGCACTTCG
TTTTCGGCGTCGTCTTCCGGAATACCGTCTCCGGGAGCATCGCCCCCCAC
TCTCCGCCAACGTTGGTCGAGCTCAAGCAACAACGGACTGGTCGACTACC
ACCACCACCATCACCACCAGCAGCACCATCAACAGCATCAGCAGCATCAG
GAGCTACGTCACCTTCATGGTGCAGTTCGCGGGGTTTCATCGCCACCGAC
CGCCCCGACGATGGCTCCCCCGCCGGGGCTCTCGCCCGAACGATACGGGC
ACCCCCCCCTCAACCCCTCCGCGCACTCAGTACTTGCGCCCTCGCGCGTG
CTCAGTAGTCGGTCGGTAACGAGCCGATCTTCAAGCATTGATTCCGAGAG
CTCGGCGCTTGGACTATACGGAGGTAGCTGCACGGGGGCGGGCGCTACTA
GCGCCTTCCAAATCGCCGGCTACCGGACCGTGGAACTGCTCCCGACGGCT
CAGCAGCGGCAAACACTCCAGAAGTGGTTTGGAGTCGTTCGCTGGACACA
CAATCGCGCCGTCGATGCCCTTCGCGTCGATCCCAGCTCATCAGCCGCTG
AGCTCCGCACCGCCGTCGCCAAGGCTGAGGCCGAGCACGAGTGGGCGGCT
GCCGTGCCCCTCGCTATCCGCGACGCAACGGTGGCGCAGCTTGTGGGCGC
GCTGCACCTAGCCCAGCGGTCGGCGGAAGTGGCTGCTGCGGCCACGGGAG
AGAGCGTGATGGCGGAGCCTATCGGGACGGCGGCGCAGAACAAGGCGCTC
AAGTACCGCACGCGGAAGGACAGGCTAGAGCAAGTAGTTCTCAGGGCCGA
CGGTGGTTTGGAGTCGTTCGCTGGACACACAATCGCGCCGTCGATGCCCT
TCGCGTCGATCCCAGCTCATCAGCCGCTGAGCTCCGCACCGCCGTCGCCA
AGGCTGAGGCCGAGCACGAGTGGGCGGCTGCCGTGCCCCTCGCTATCCGC
GACGCAACGGTGGCGCAGCTTGTGGGCGCGCTGCACCTAGCCCAGCGGTC
GGCGGAAGTGGCTGCTGCGGCCACGGGAGAGAGCGTGATGGCGGAGCCTA
TCGGGACGGCGGCGCAGAACAAGGCGCTCAAGTACCGCACGCGGAAGGAC
AGGCTAGAGCAAGTAGTTCTCAGGGCCGACGGGTTCCAGTTCGGGATACC
TTACCCGGAGTACTTCGGCTACGCGCCGCTTGCCTCGTCCGCCCCTATTC
CAGACCGGGTGCAGACCGACGCAATTCTCGTCCGTAGCACCGAGCGATTC
TACCTCTGCATCCCGGACACGGCCTGAGTTCCAGTTCGGGATACCTTACC
CGGAGTACTTCGGCTACGCGCCGCTTGCCTCGTCCGCCCCTATTCCAGAC
CGGGTGCAGACCGACGCAATTCTCGTCCGTAGCACCGAGCGATTCTACCT
CTGCATCCCGGACACGGCCTGA
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