mRNA_P-canaliculata_contig100812.160.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100812.160.1
Unique NamemRNA_P-canaliculata_contig100812.160.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100812.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100812contigP-canaliculata_contig100812:27..521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size495
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.9367352-CDS-P-canaliculata_contig100812:26..5211622815581.9367352-CDS-P-canaliculata_contig100812:26..521Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100812 27..521 +
1693494149.5121717-CDS-P-canaliculata_contig100812:26..5211693494149.5121717-CDS-P-canaliculata_contig100812:26..521Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100812 27..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100812.160.1prot_P-canaliculata_contig100812.160.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100812 27..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100812.160.1

>prot_P-canaliculata_contig100812.160.1 ID=prot_P-canaliculata_contig100812.160.1|Name=mRNA_P-canaliculata_contig100812.160.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=165bp
ILWLGILCFFLSCSSDYERTVSFTLELPKVPEEYRDTYTNEDFEINIYET
IEDWTLDRNPIYTNNFDATGEMVIEESFVETLPYYYMDISTPDNVLSNWV
YKGFSVVLPTIKLEGNVNRVMRAIKLTESKKFIGDWKFVSEPFSNNDKAE
NYIGFTVSKDFMVTT
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mRNA from alignment at P-canaliculata_contig100812:27..521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100812.160.1 ID=mRNA_P-canaliculata_contig100812.160.1|Name=mRNA_P-canaliculata_contig100812.160.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at P-canaliculata_contig100812:27..521+ (Pelvetia canaliculata dioecious)
ATATTGTGGTTGGGGATCCTGTGCTTTTTCCTTTCCTGTAGCAGTGATTA
TGAACGGACAGTCTCATTTACCCTGGAACTTCCAAAAGTGCCGGAAGAAT
ATCGGGATACCTATACCAATGAAGATTTTGAAATTAACATCTACGAAACC
ATTGAGGACTGGACGTTGGACCGTAACCCCATTTATACCAATAATTTCGA
TGCCACGGGGGAAATGGTAATAGAAGAAAGCTTCGTCGAAACATTGCCCT
ATTATTATATGGATATTTCTACCCCGGACAATGTACTTAGCAATTGGGTA
TACAAAGGGTTTTCAGTTGTATTGCCCACCATAAAACTTGAAGGGAATGT
CAATAGAGTTATGAGGGCAATAAAACTGACGGAATCCAAAAAATTTATTG
GGGACTGGAAATTTGTATCTGAGCCATTTTCAAACAACGACAAGGCCGAA
AATTATATAGGGTTTACCGTCTCCAAGGATTTTATGGTCACTACC
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Coding sequence (CDS) from alignment at P-canaliculata_contig100812:27..521+

>mRNA_P-canaliculata_contig100812.160.1 ID=mRNA_P-canaliculata_contig100812.160.1|Name=mRNA_P-canaliculata_contig100812.160.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at P-canaliculata_contig100812:27..521+ (Pelvetia canaliculata dioecious)
ATATTGTGGTTGGGGATCCTGTGCTTTTTCCTTTCCTGTAGCAGTGATTA
TGAACGGACAGTCTCATTTACCCTGGAACTTCCAAAAGTGCCGGAAGAAT
ATCGGGATACCTATACCAATGAAGATTTTGAAATTAACATCTACGAAACC
ATTGAGGACTGGACGTTGGACCGTAACCCCATTTATACCAATAATTTCGA
TGCCACGGGGGAAATGGTAATAGAAGAAAGCTTCGTCGAAACATTGCCCT
ATTATTATATGGATATTTCTACCCCGGACAATGTACTTAGCAATTGGGTA
TACAAAGGGTTTTCAGTTGTATTGCCCACCATAAAACTTGAAGGGAATGT
CAATAGAGTTATGAGGGCAATAAAACTGACGGAATCCAAAAAATTTATTG
GGGACTGGAAATTTGTATCTGAGCCATTTTCAAACAACGACAAGGCCGAA
AATTATATAGGGTTTACCGTCTCCAAGGATTTTATGGTCACTACCATATT
GTGGTTGGGGATCCTGTGCTTTTTCCTTTCCTGTAGCAGTGATTATGAAC
GGACAGTCTCATTTACCCTGGAACTTCCAAAAGTGCCGGAAGAATATCGG
GATACCTATACCAATGAAGATTTTGAAATTAACATCTACGAAACCATTGA
GGACTGGACGTTGGACCGTAACCCCATTTATACCAATAATTTCGATGCCA
CGGGGGAAATGGTAATAGAAGAAAGCTTCGTCGAAACATTGCCCTATTAT
TATATGGATATTTCTACCCCGGACAATGTACTTAGCAATTGGGTATACAA
AGGGTTTTCAGTTGTATTGCCCACCATAAAACTTGAAGGGAATGTCAATA
GAGTTATGAGGGCAATAAAACTGACGGAATCCAAAAAATTTATTGGGGAC
TGGAAATTTGTATCTGAGCCATTTTCAAACAACGACAAGGCCGAAAATTA
TATAGGGTTTACCGTCTCCAAGGATTTTATGGTCACTACC
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