mRNA_P-canaliculata_contig100801.157.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100801.157.1
Unique NamemRNA_P-canaliculata_contig100801.157.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig100801.157.1 vs. uniprot
Match: A0A518DCV8_9BACT (SASA domain-containing protein n=1 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518DCV8_9BACT)

HSP 1 Score: 108 bits (270), Expect = 5.660e-24
Identity = 64/176 (36.36%), Postives = 94/176 (53.41%), Query Frame = 1 
Query:   73 PILIKNHSFEVDGGADGEFSVGDVTGWVKSGRSTGWLNVSTEFYSNTDVVDTSPSGGTYADMDGKRVFFFAANGNRFITQTLESNIKVGQQYRLTIAVGNRDASTRQGFAGYDIRLSAGGTVVATETSTVPPGSGTFTDVELVYTARAGDSGELGIFIGTLNASSSSALEVDNVRL 600
            P+ I N SFE    +D   +   V+GW+KSG   G  N     Y +   +D +  GG    M+G          +  + QTL + ++ G  Y+LT+A+G+RDA    GFAG  I L AGG V+    +      GTFTDV + YTA AGD+G LG+ +  L+ +  ++++ DNVRL
Sbjct:  254 PLQITNPSFETPARSDDAVNPAIVSGWIKSGGVIGTFNPGGGAYLDASALDAN--GGVVGAMEGTHALSMTG-ADASVEQTLSAAVRAGTTYKLTVAIGDRDAGGSPGFAGARIELLAGGQVLTDSGAITGLADGTFTDVSISYTAGAGDAGALGVRLVALDGAGGTSVDFDNVRL 426
[Close]
BLAST of mRNA_P-canaliculata_contig100801.157.1 vs. uniprot
Match: UPI000786128F (tandem-95 repeat protein n=1 Tax=Endozoicomonas arenosclerae TaxID=1633495 RepID=UPI000786128F)

HSP 1 Score: 56.6 bits (135), Expect = 7.790e-6
Identity = 58/183 (31.69%), Postives = 85/183 (46.45%), Query Frame = 1 
Query:   76 ILIKNHSFEVDG-GADGEFSVGDVTG-WVKSGRSTGWLNVSTEFYSNTDVVDTSPSG--GTYADMDGKRVFFFAANGNRFITQTLESNIKVGQQYRLTIAVGNRDASTRQGFAGYDIRLSAGGTVVATETSTVPPGSGTFTDVELVYT--ARAGDSGELGI-FIGTLNASSSSALEVDNVRLT 603
            ++I +HSFE      DG F     +  W  SG + G  N     Y+N  + + +  G    + + DG             I+QTL  N      Y+L + +GNR   + +GFA Y++R+ AGG V+A++ S V P  G F  + L     A A DS  +G   +  L+  S   L  DNVRLT
Sbjct: 5228 VVINDHSFESQSLTTDGAFVHQPTSSSWTFSGANDGIHN-----YNNNGLNEPATKGINAGFLNTDGT------------ISQTLVENFDRSISYQLQVDIGNR---SNEGFADYEVRIKAGGVVLASDGS-VTPAEGEFDTLTLNLNGAAIAADSAAIGQPLVIELHKISGPQLVFDNVRLT 5389
[Close]
BLAST of mRNA_P-canaliculata_contig100801.157.1 vs. uniprot
Match: A0A081KG95_9GAMM (Uncharacterized protein n=1 Tax=Endozoicomonas elysicola TaxID=305900 RepID=A0A081KG95_9GAMM)

HSP 1 Score: 55.5 bits (132), Expect = 1.920e-5
Identity = 40/136 (29.41%), Postives = 64/136 (47.06%), Query Frame = 1 
Query:   61 STASPILIKNHSFEVDGGADGEFSVGDVTG-WVKSGRSTGWLNVSTEFYSNTDVVDTSPSGGTYADMDGKRVFFFAANGNRFITQTLESNIKVGQQYRLTIAVGNRDASTRQGFAGYDIRLSAGGTVVATETSTVP 465
            +T+  + I +HSFE     DGE  +      W  S   +G  N +     +  +   +P G             +A N N  ++QTL  +     QY+L + +GNR  S   GFA Y++R++AGG V+A++ S  P
Sbjct: 1511 ATSRNVTIADHSFESVTLIDGEPVLNPAASPWSFSSTHSGIWNPT-----SGQITQEAPDGNNIG---------YATNDNETLSQTLSESFSNDTQYQLQVEIGNR--SDTAGFANYEVRITAGGVVLASDGSVSP 1630
[Close]
BLAST of mRNA_P-canaliculata_contig100801.157.1 vs. uniprot
Match: A0A552KMW5_9CHRO (PEP-CTERM sorting domain-containing protein n=2 Tax=Microcystis TaxID=1125 RepID=A0A552KMW5_9CHRO)

HSP 1 Score: 53.9 bits (128), Expect = 2.700e-5
Identity = 60/184 (32.61%), Postives = 85/184 (46.20%), Query Frame = 1 
Query:   28 AIALSTLLA---GVSTASPILIKNHSFEV----DGGADGEFSVGDVTGWVKSGRST-GWLNVSTEFYSNTDVVD-------TSPSGGTYADMDGKRVFFFAANGNRFITQTLESNIKVGQQYRLTIAVGNRDASTRQGFAGYDIRLSAGGTVVATETSTVPPGSGTFTDVELVYTARAGDSGEL 534
            AIA S L+    G   A+ I I NHSFE     D     +  +G    W  +G S  G++N         DV         T P+G   A  +G  +       ++ +T+TL++N K    Y L + VG+R       FAGY+I L AG TV+A+  S + P + TF  V + YT+  G SG L
Sbjct:   24 AIASSCLMIVPQGQVRAASIFIANHSFEAPIITDPSGILDTGIGTTGNWTFAGASARGFINPG---LGENDVPGFWYGPSPTLPNGNQVAWSNGGTI-------SQTLTETLQANTK----YTLGVYVGHRQ---NVAFAGYNIELLAGATVLASNNS-ITPAAETFAPVTVSYTS--GSSGSL 187
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100801.157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A518DCV8_9BACT5.660e-2436.36SASA domain-containing protein n=1 Tax=Pirellulimo... [more]
UPI000786128F7.790e-631.69tandem-95 repeat protein n=1 Tax=Endozoicomonas ar... [more]
A0A081KG95_9GAMM1.920e-529.41Uncharacterized protein n=1 Tax=Endozoicomonas ely... [more]
A0A552KMW5_9CHRO2.700e-532.61PEP-CTERM sorting domain-containing protein n=2 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100801contigP-canaliculata_contig100801:37..651 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size615
Cds size615
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.8142467-CDS-P-canaliculata_contig100801:36..6511622815581.8142467-CDS-P-canaliculata_contig100801:36..651Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100801 37..651 -
1693494149.4863422-CDS-P-canaliculata_contig100801:36..6511693494149.4863422-CDS-P-canaliculata_contig100801:36..651Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100801 37..651 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100801.157.1prot_P-canaliculata_contig100801.157.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100801 37..651 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100801.157.1

>prot_P-canaliculata_contig100801.157.1 ID=prot_P-canaliculata_contig100801.157.1|Name=mRNA_P-canaliculata_contig100801.157.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=205bp
MKINKKTFSAIALSTLLAGVSTASPILIKNHSFEVDGGADGEFSVGDVTG
WVKSGRSTGWLNVSTEFYSNTDVVDTSPSGGTYADMDGKRVFFFAANGNR
FITQTLESNIKVGQQYRLTIAVGNRDASTRQGFAGYDIRLSAGGTVVATE
TSTVPPGSGTFTDVELVYTARAGDSGELGIFIGTLNASSSSALEVDNVRL
TEDGA
back to top

mRNA from alignment at P-canaliculata_contig100801:37..651-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100801.157.1 ID=mRNA_P-canaliculata_contig100801.157.1|Name=mRNA_P-canaliculata_contig100801.157.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=615bp|location=Sequence derived from alignment at P-canaliculata_contig100801:37..651- (Pelvetia canaliculata dioecious)
ATGAAGATTAATAAGAAAACCTTTTCAGCCATTGCCCTTTCGACCCTGCT
GGCGGGAGTCTCAACGGCATCGCCCATACTTATAAAGAACCACAGTTTTG
AAGTGGATGGAGGGGCGGATGGTGAATTTAGCGTCGGCGATGTAACTGGT
TGGGTAAAGTCAGGCAGATCCACTGGCTGGCTCAATGTAAGCACGGAATT
TTATTCGAACACCGACGTAGTCGACACTAGTCCCAGCGGCGGGACGTATG
CCGATATGGACGGAAAACGGGTGTTCTTTTTCGCTGCCAATGGCAATCGG
TTCATCACACAGACTCTGGAGAGTAATATCAAGGTCGGCCAGCAATACAG
GCTGACAATTGCGGTGGGAAATCGTGATGCCAGCACGCGTCAGGGTTTTG
CTGGGTACGATATCCGTTTGTCAGCGGGTGGAACTGTAGTCGCGACGGAG
ACGAGCACGGTTCCTCCGGGGAGCGGAACTTTCACCGATGTCGAGCTGGT
CTACACCGCGCGGGCTGGGGATAGTGGCGAATTGGGGATTTTTATAGGGA
CTTTGAATGCCAGTTCAAGCAGCGCGCTTGAGGTGGATAATGTTCGCCTT
ACCGAGGATGGCGCT
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig100801:37..651-

>mRNA_P-canaliculata_contig100801.157.1 ID=mRNA_P-canaliculata_contig100801.157.1|Name=mRNA_P-canaliculata_contig100801.157.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1230bp|location=Sequence derived from alignment at P-canaliculata_contig100801:37..651- (Pelvetia canaliculata dioecious)
ATGAAGATTAATAAGAAAACCTTTTCAGCCATTGCCCTTTCGACCCTGCT
GGCGGGAGTCTCAACGGCATCGCCCATACTTATAAAGAACCACAGTTTTG
AAGTGGATGGAGGGGCGGATGGTGAATTTAGCGTCGGCGATGTAACTGGT
TGGGTAAAGTCAGGCAGATCCACTGGCTGGCTCAATGTAAGCACGGAATT
TTATTCGAACACCGACGTAGTCGACACTAGTCCCAGCGGCGGGACGTATG
CCGATATGGACGGAAAACGGGTGTTCTTTTTCGCTGCCAATGGCAATCGG
TTCATCACACAGACTCTGGAGAGTAATATCAAGGTCGGCCAGCAATACAG
GCTGACAATTGCGGTGGGAAATCGTGATGCCAGCACGCGTCAGGGTTTTG
CTGGGTACGATATCCGTTTGTCAGCGGGTGGAACTGTAGTCGCGACGGAG
ACGAGCACGGTTCCTCCGGGGAGCGGAACTTTCACCGATGTCGAGCTGGT
CTACACCGCGCGGGCTGGGGATAGTGGCGAATTGGGGATTTTTATAGGGA
CTTTGAATGCCAGTTCAAGCAGCGCGCTTGAGGTGGATAATGTTCGCCTT
ACCGAGGATGGCGCTATGAAGATTAATAAGAAAACCTTTTCAGCCATTGC
CCTTTCGACCCTGCTGGCGGGAGTCTCAACGGCATCGCCCATACTTATAA
AGAACCACAGTTTTGAAGTGGATGGAGGGGCGGATGGTGAATTTAGCGTC
GGCGATGTAACTGGTTGGGTAAAGTCAGGCAGATCCACTGGCTGGCTCAA
TGTAAGCACGGAATTTTATTCGAACACCGACGTAGTCGACACTAGTCCCA
GCGGCGGGACGTATGCCGATATGGACGGAAAACGGGTGTTCTTTTTCGCT
GCCAATGGCAATCGGTTCATCACACAGACTCTGGAGAGTAATATCAAGGT
CGGCCAGCAATACAGGCTGACAATTGCGGTGGGAAATCGTGATGCCAGCA
CGCGTCAGGGTTTTGCTGGGTACGATATCCGTTTGTCAGCGGGTGGAACT
GTAGTCGCGACGGAGACGAGCACGGTTCCTCCGGGGAGCGGAACTTTCAC
CGATGTCGAGCTGGTCTACACCGCGCGGGCTGGGGATAGTGGCGAATTGG
GGATTTTTATAGGGACTTTGAATGCCAGTTCAAGCAGCGCGCTTGAGGTG
GATAATGTTCGCCTTACCGAGGATGGCGCT
back to top