mRNA_P-canaliculata_contig100797.154.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100797.154.1
Unique NamemRNA_P-canaliculata_contig100797.154.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig100797.154.1 vs. uniprot
Match: A0A6H5KWX2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWX2_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.680e-19
Identity = 46/64 (71.88%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:   10 LGGTGAATTVIFDPVANGKSVLAVAAVQDPRVIEWYPGGVIWLRAGRAAIGRLLRMIELAIHQV 201
            +G  G ATTVIFD VANGKSVLA AA+QDPRV   +PGGVIWLRAG +A  RLLRM+ELA+ QV
Sbjct:   15 MGVIGGATTVIFDSVANGKSVLAAAAMQDPRVQAAFPGGVIWLRAGHSADDRLLRMMELAVCQV 78
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100797.154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KWX2_9PHAE1.680e-1971.88NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100797contigP-canaliculata_contig100797:99..493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-07_000970.1
Exons2
Model size203
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.669568-CDS-P-canaliculata_contig100797:98..2311622815581.669568-CDS-P-canaliculata_contig100797:98..231Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100797 99..231 -
1693494149.434891-CDS-P-canaliculata_contig100797:98..2311693494149.434891-CDS-P-canaliculata_contig100797:98..231Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100797 99..231 -
1622815581.6842542-CDS-P-canaliculata_contig100797:425..4931622815581.6842542-CDS-P-canaliculata_contig100797:425..493Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100797 426..493 -
1693494149.4426208-CDS-P-canaliculata_contig100797:425..4931693494149.4426208-CDS-P-canaliculata_contig100797:425..493Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100797 426..493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100797.154.1prot_P-canaliculata_contig100797.154.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100797 99..493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100797.154.1

>prot_P-canaliculata_contig100797.154.1 ID=prot_P-canaliculata_contig100797.154.1|Name=mRNA_P-canaliculata_contig100797.154.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=67bp
DLELGGTGAATTVIFDPVANGKSVLAVAAVQDPRVIEWYPGGVIWLRAGR
AAIGRLLRMIELAIHQV
back to top

mRNA from alignment at P-canaliculata_contig100797:99..493-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100797.154.1 ID=mRNA_P-canaliculata_contig100797.154.1|Name=mRNA_P-canaliculata_contig100797.154.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=395bp|location=Sequence derived from alignment at P-canaliculata_contig100797:99..493- (Pelvetia canaliculata dioecious)
GACCTGGAGTTGGGCGGTACTGGCGCGGCAACCACCGTGATTTTCGACCC
CGTAGCAAACGGCAAAAGGTGCGTGAACCCGGGAAATGGGCCTAAAATGT
ACTTCAGGTGCGCGTTCGCCTTGCGGCCTCATGCCCAGTGGGGATTGAAT
CCCAAACGTCTTGGGTGGTATTTCAATTGCAACCATAAGTCTAGGTGTGA
ATTGCCGCTTCGTGCCTGCGCAAAAACACGTGAACACTACTGCCTATGCT
GTCGGTTCGTAGTGTTCTTGCGGTGGCAGCCGTGCAGGATCCTCGCGTAA
TTGAGTGGTATCCCGGGGGCGTGATCTGGCTTCGAGCCGGTAGAGCCGCG
ATCGGTCGCTTGTTGCGGATGATCGAGCTCGCCATCCACCAGGTG
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig100797:99..493-

>mRNA_P-canaliculata_contig100797.154.1 ID=mRNA_P-canaliculata_contig100797.154.1|Name=mRNA_P-canaliculata_contig100797.154.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at P-canaliculata_contig100797:99..493- (Pelvetia canaliculata dioecious)
GACCTGGAGTTGGGCGGTACTGGCGCGGCAACCACCGTGATTTTCGACCC
CGTAGCAAACGGCAAAAGGACCTGGAGTTGGGCGGTACTGGCGCGGCAAC
CACCGTGATTTTCGACCCCGTAGCAAACGGCAAAAGTGTTCTTGCGGTGG
CAGCCGTGCAGGATCCTCGCGTAATTGAGTGGTATCCCGGGGGCGTGATC
TGGCTTCGAGCCGGTAGAGCCGCGATCGGTCGCTTGTTGCGGATGATCGA
GCTCGCCATCCACCAGGTGTGTTCTTGCGGTGGCAGCCGTGCAGGATCCT
CGCGTAATTGAGTGGTATCCCGGGGGCGTGATCTGGCTTCGAGCCGGTAG
AGCCGCGATCGGTCGCTTGTTGCGGATGATCGAGCTCGCCATCCACCAGG
TG
back to top