mRNA_P-canaliculata_contig100789.153.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100789.153.1
Unique NamemRNA_P-canaliculata_contig100789.153.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.310e-39
Identity = 80/151 (52.98%), Postives = 106/151 (70.20%), Query Frame = 2
Query:    2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPRFRRSSNNP*MIQGYWL*NGVVAPLDAVARR 454
            CGRR+LLAGVVVFI+PNTAAQIA TL +A  F+ VSE +AP+ S+WDAW++R+GH ++FV++Y+ALLLKVDVSGE   SQ+ + +V+VA H CMILAV+ E  ++T  LK   QR++P+ RFR          G  L +    P  A  RR
Sbjct: 1128 CGRRVLLAGVVVFIFPNTAAQIAITLMMAFAFVMVSEGLAPFASKWDAWLNRTGHTVVFVSMYIALLLKVDVSGERAGSQRVYEIVLVAAHACMILAVMTETFVLTWSLKV-EQRQEPTTRFRHGKL---FRSGRGLESAQDDPFSADLRR 1274          
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 151 bits (382), Expect = 2.220e-38
Identity = 75/122 (61.48%), Postives = 95/122 (77.87%), Query Frame = 2
Query:    2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPRF 367
            CGRR+LLAGVVVFIYPNTA QIA TL +A  F+ VSE +APY S+WD W+SR GHA++FV++YVALLLKVDVS E   SQ+ F VV+VA H CMIL +V+E +++T  L  G +R+ P+ RF
Sbjct: 1939 CGRRVLLAGVVVFIYPNTAPQIAITLLMAFAFVVVSEGLAPYASRWDTWLSRMGHAVVFVSMYVALLLKVDVSNERVESQRVFEVVLVAAHACMILVIVIETVVLTCALTVG-ERDGPALRF 2059          
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: A0A6H5KP34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP34_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.590e-37
Identity = 71/121 (58.68%), Postives = 88/121 (72.73%), Query Frame = 2
Query:    2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPR 364
            CGRRILL G+VVF+YPNTAAQIA TL +  VF  +SEA+ P    WD W+SR  HA++F+++YVALLLKVDVS E  SSQK F  V+VA H CM+LAVVVE I++    +   Q E P+PR
Sbjct:   28 CGRRILLTGLVVFMYPNTAAQIAITLIMTVVFAVLSEALHPNAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSDEKRSSQKVFEAVLVAAHACMVLAVVVETIVLGCPSRVKEQHE-PAPR 147          
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.320e-35
Identity = 72/121 (59.50%), Postives = 92/121 (76.03%), Query Frame = 2
Query:    2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPR 364
            CGRRILL G+VVFIYPNTAAQIA TL +  VF  +SEA+ PY   WD W+SR  HA++F+++YVALLLKVDVS E  SSQK F  V+VA H CMILAVVVE I++    +  +++++P+PR
Sbjct:  889 CGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGCPSRV-KEQDEPAPR 1008          
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.460e-35
Identity = 72/121 (59.50%), Postives = 92/121 (76.03%), Query Frame = 2
Query:    2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPR 364
            CGRRILL G+VVFIYPNTAAQIA TL +  VF  +SEA+ PY   WD W+SR  HA++F+++YVALLLKVDVS E  SSQK F  V+VA H CMILAVVVE I++    +  +++++P+PR
Sbjct: 2627 CGRRILLTGLVVFIYPNTAAQIAITLIMTVVFAVLSEALRPYAQAWDTWVSRVSHAVVFMSVYVALLLKVDVSNEKGSSQKVFEAVLVAAHACMILAVVVETILLGCPSRV-KEQDEPAPR 2746          
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D8LH65_ECTSI (Polymorphic outer membrane protein G/I family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH65_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 3.810e-35
Identity = 68/111 (61.26%), Postives = 88/111 (79.28%), Query Frame = 2
Query:    2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKG 334
            CG R+LLAGVVVFIYP+TAAQIA TL IA  F+ VSE ++PY S+WD W++R GH ++FV+++VALLLKVDV+ E  SSQK F  V+VA H CM+L VV+E I++T  L+G
Sbjct:  570 CGWRVLLAGVVVFIYPDTAAQIAVTLMIAFAFVIVSEVLSPYSSKWDRWVNRMGHVVVFVSMFVALLLKVDVADEDASSQKVFESVLVAAHVCMVLVVVIEAIVLTSSLRG 680          
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.040e-33
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 2
Query:    2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQR-EDPSPRFR 370
            C RR+LLAGVVVFIYPNTAAQIA TL IA  F  +SE +APY S+WD WISR GH ++F+++YVALLLKVDVS E  SSQ+ F  V+VA H CMIL V+VE  +    L+  R+     SPRFR
Sbjct: 1384 CFRRVLLAGVVVFIYPNTAAQIAVTLLIAFAFALLSEGLAPYASRWDTWISRVGHIVVFLSMYVALLLKVDVSDERASSQEVFESVLVAVHVCMILFVLVEAAVQAWSLREERRSLSAASPRFR 1507          
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 1.940e-33
Identity = 70/141 (49.65%), Postives = 93/141 (65.96%), Query Frame = 2
Query:    2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQR-----EDPSPRFRRSSNNP*MIQGYW 409
            C RR+LLAGVVVFIYPN++AQIA TL +A  F+ +SE +APY S+WD WI+R GH ++  ++Y+ALLLKVDVS E +SSQ  F  V+V  H  M++  V E +++ L L+  R+R     ED  PRFR S     M    W
Sbjct: 1484 CARRVLLAGVVVFIYPNSSAQIAITLIVAFTFVLISEGLAPYASRWDTWINRMGHVVVVASMYLALLLKVDVSKERSSSQGVFEAVLVVAHVVMVVVXVAETLVLALALRAERRRDQHLQEDRLPRFRSSGKAKAMQTHKW 1624          
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 6.560e-33
Identity = 68/124 (54.84%), Postives = 90/124 (72.58%), Query Frame = 2
Query:    2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPRFRR 373
            CGRR+LL G++VFIYPNTAAQ+A TL +A  F  +SEA++PY S+W+ W++R GH ++ V++YVALLLKVDVS E   SQ  F  V+V  H CMIL+VVVE  ++  L +  + RED   RFRR
Sbjct: 1358 CGRRVLLTGIIVFIYPNTAAQLAITLMMAFFFALLSEAVSPYSSRWETWVNRMGHVVVAVSVYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVAGLWRQ-KLREDVPARFRR 1480          
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 8.880e-33
Identity = 71/124 (57.26%), Postives = 89/124 (71.77%), Query Frame = 2
Query:    2 CGRRILLAGVVVFIYPNTAAQIAATLAIATVFIFVSEAMAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIVAGHGCMILAVVVEGIIMTLLLKGGRQREDPSPRFRR 373
            CGRRILL G+VVFIYPNTAAQ+A TL +A  F  +SEA++PY S+W+ W++R GH ++ V++YVALLLKVDVS E   SQ  F  V+V  H CMIL+VVVE  ++  L    R RED   RFRR
Sbjct: 1299 CGRRILLTGIVVFIYPNTAAQLAITLMMAFFFALLSEAISPYSSRWETWVNRMGHVVVAVSMYVALLLKVDVSDERADSQSVFEAVLVTVHACMILSVVVETFVVAGLWTR-RLREDLPARFRR 1421          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100789.153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G301_ECTSI1.310e-3952.98Polymorphic Outer membrane protein G/I family n=1 ... [more]
D7G5Y7_ECTSI2.220e-3861.48Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5KP34_9PHAE3.590e-3758.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHH1_ECTSI1.320e-3559.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI1.460e-3559.50LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LH65_ECTSI3.810e-3561.26Polymorphic outer membrane protein G/I family prot... [more]
A0A6H5K0E9_9PHAE1.040e-3360.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LSC0_ECTSI1.940e-3349.65Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5K7Z1_9PHAE6.560e-3354.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X5_ECTSI8.880e-3357.26Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100789contigP-canaliculata_contig100789:2..710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue6.6e-20
Seed eggNOG ortholog2880.D7G301
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons2
Model size692
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100789.153.1prot_P-canaliculata_contig100789.153.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100789 117..392 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.5843213-UTR-P-canaliculata_contig100789:1..1161622815581.5843213-UTR-P-canaliculata_contig100789:1..116Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100789 2..116 +
1693494149.3976874-UTR-P-canaliculata_contig100789:1..1161693494149.3976874-UTR-P-canaliculata_contig100789:1..116Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100789 2..116 +
1622815581.6125479-UTR-P-canaliculata_contig100789:392..4011622815581.6125479-UTR-P-canaliculata_contig100789:392..401Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100789 393..401 +
1693494149.418708-UTR-P-canaliculata_contig100789:392..4011693494149.418708-UTR-P-canaliculata_contig100789:392..401Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100789 393..401 +
1622815581.62683-UTR-P-canaliculata_contig100789:418..7101622815581.62683-UTR-P-canaliculata_contig100789:418..710Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100789 419..710 +
1693494149.4267533-UTR-P-canaliculata_contig100789:418..7101693494149.4267533-UTR-P-canaliculata_contig100789:418..710Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100789 419..710 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.5985498-CDS-P-canaliculata_contig100789:116..3921622815581.5985498-CDS-P-canaliculata_contig100789:116..392Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100789 117..392 +
1693494149.4105253-CDS-P-canaliculata_contig100789:116..3921693494149.4105253-CDS-P-canaliculata_contig100789:116..392Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100789 117..392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100789.153.1

>prot_P-canaliculata_contig100789.153.1 ID=prot_P-canaliculata_contig100789.153.1|Name=mRNA_P-canaliculata_contig100789.153.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=92bp
MAPYHSQWDAWISRSGHAIIFVTIYVALLLKVDVSGESNSSQKTFGVVIV
AGHGCMILAVVVEGIIMTLLLKGGRQREDPSPRFRRSSNNP*
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mRNA from alignment at P-canaliculata_contig100789:2..710+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100789.153.1 ID=mRNA_P-canaliculata_contig100789.153.1|Name=mRNA_P-canaliculata_contig100789.153.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=709bp|location=Sequence derived from alignment at P-canaliculata_contig100789:2..710+ (Pelvetia canaliculata dioecious)
ATGCGGCCGCCGTATCTTGCTGGCCGGAGTTGTGGTGTTCATTTACCCTA ATACCGCGGCTCAGATTGCTGCTACTCTGGCGATCGCGACCGTCTTCATC TTCGTATCAGAAGCTATGGCACCGTACCATTCGCAATGGGACGCCTGGAT CAGTCGCTCAGGGCATGCGATTATTTTCGTTACCATATACGTAGCTCTGT TGCTGAAGGTCGACGTGTCCGGCGAGAGTAACTCCAGTCAGAAGACGTTT GGGGTGGTAATAGTAGCTGGTCATGGGTGCATGATCCTTGCGGTGGTGGT GGAGGGCATAATCATGACTTTGTTGTTGAAGGGCGGCAGGCAGCGGGAGG ATCCTAGCCCTAGGTTTCGGCGATCGTCGAATAACCCTTGAATGATCCAG GTATCGTTTGTTGAAAGGGATACTGGCTGTAAAACGGAGTTGTAGCCCCT TTGGACGCGGTCGCACGCCGGCATCCCGATCATCTTACTTTTTGCGTCGG GTCAGGAGGCATGAAATGTCTCTCGTAAGTCAGGCAAACACCGGCAAGTG AGTTGGAGACTTACATTTCCTTGTCCATCCCTTTGATGTAAGTATATTCT TGTGTTTTGTGGCGTTTTCCCCCTTGGATACGATGTACGACTGATGTTGG CATTATATTTTTGCTTGTTTCGTTTTCCCTTTCCAACGAAGACCAAGAAA TAAACCCGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100789:2..710+

>mRNA_P-canaliculata_contig100789.153.1 ID=mRNA_P-canaliculata_contig100789.153.1|Name=mRNA_P-canaliculata_contig100789.153.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at P-canaliculata_contig100789:2..710+ (Pelvetia canaliculata dioecious)
ATGGCACCGTACCATTCGCAATGGGACGCCTGGATCAGTCGCTCAGGGCA
TGCGATTATTTTCGTTACCATATACGTAGCTCTGTTGCTGAAGGTCGACG
TGTCCGGCGAGAGTAACTCCAGTCAGAAGACGTTTGGGGTGGTAATAGTA
GCTGGTCATGGGTGCATGATCCTTGCGGTGGTGGTGGAGGGCATAATCAT
GACTTTGTTGTTGAAGGGCGGCAGGCAGCGGGAGGATCCTAGCCCTAGGT
TTCGGCGATCGTCGAATAACCCTTGAATGGCACCGTACCATTCGCAATGG
GACGCCTGGATCAGTCGCTCAGGGCATGCGATTATTTTCGTTACCATATA
CGTAGCTCTGTTGCTGAAGGTCGACGTGTCCGGCGAGAGTAACTCCAGTC
AGAAGACGTTTGGGGTGGTAATAGTAGCTGGTCATGGGTGCATGATCCTT
GCGGTGGTGGTGGAGGGCATAATCATGACTTTGTTGTTGAAGGGCGGCAG
GCAGCGGGAGGATCCTAGCCCTAGGTTTCGGCGATCGTCGAATAACCCTT
GA
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