mRNA_P-canaliculata_contig10076.151.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10076.151.1
Unique NamemRNA_P-canaliculata_contig10076.151.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10076.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10076contigP-canaliculata_contig10076:38..1216 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size364
Cds size279
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10076.151.1prot_P-canaliculata_contig10076.151.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10076 122..1216 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.4653292-UTR-P-canaliculata_contig10076:37..1211622815581.4653292-UTR-P-canaliculata_contig10076:37..121Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10076 38..121 +
1693494149.3583028-UTR-P-canaliculata_contig10076:37..1211693494149.3583028-UTR-P-canaliculata_contig10076:37..121Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10076 38..121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.47829-CDS-P-canaliculata_contig10076:121..3191622815581.47829-CDS-P-canaliculata_contig10076:121..319Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10076 122..319 +
1693494149.3671749-CDS-P-canaliculata_contig10076:121..3191693494149.3671749-CDS-P-canaliculata_contig10076:121..319Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10076 122..319 +
1622815581.4904299-CDS-P-canaliculata_contig10076:1135..12161622815581.4904299-CDS-P-canaliculata_contig10076:1135..1216Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10076 1136..1216 +
1693494149.3767369-CDS-P-canaliculata_contig10076:1135..12161693494149.3767369-CDS-P-canaliculata_contig10076:1135..1216Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10076 1136..1216 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10076.151.1

>prot_P-canaliculata_contig10076.151.1 ID=prot_P-canaliculata_contig10076.151.1|Name=mRNA_P-canaliculata_contig10076.151.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=93bp
MQTDLALFSPDSWGFHTMHVGFWRFVQAQSSRATSVTAESILYRAAGTLR
AGANASKYSSYPVRWKHLISDSLCQQKLMEMQLLLEALFAKNA
back to top

mRNA from alignment at P-canaliculata_contig10076:38..1216+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10076.151.1 ID=mRNA_P-canaliculata_contig10076.151.1|Name=mRNA_P-canaliculata_contig10076.151.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1179bp|location=Sequence derived from alignment at P-canaliculata_contig10076:38..1216+ (Pelvetia canaliculata dioecious)
ACGGAATCTGTCATCAAACATATTCTATGAACAGATTATATCTGAACGTT
AAGACAGGGCCTGAACGGACCTATATAGGTCCGTATGCAAACGGACCTCG
CTTTATTTAGCCCCGATTCCTGGGGTTTTCATACGATGCATGTTGGTTTT
TGGCGGTTTGTTCAGGCGCAGTCGAGTAGAGCAACCTCGGTAACCGCAGA
GAGCATTTTGTACAGGGCAGCAGGCACCCTCAGGGCTGGAGCGAACGCAA
GCAAGTATTCATCATATCCTGTGAGGTGGAAGGTGAGTTTACTGCGAACA
ATTGGATATTAACGTGTGCGGCTAACAGCGATTTTGACATATTATTAAAA
TGTGGCGTACCCATACCCTTAGTAGGTCCGCTGCGTATGGTCCGCTGCTG
TACGGTTCGCTCGTGGTTCGGCGCTGCATGTCTTGCTGCTCGATGGTCAT
CACGCCATTAATGAATGTGTTCTCTCTGAGGTCACCGGAAGCGTGGAACT
GGTTCGATGTGGAATGTGAGTTTATGTCAACAATTGAATGCTAACGCGCG
GCCTACTGTGATTTCAAGATATTATTCAAATGTAGCCCGTACCGTACCAG
TCCGCTGCGGTGTGGTTCGCTGGTGCATTGTTCCCTCATGGTTCGGTGCT
GCATGTCTAGCTGCTCGATTGTCATCACGCCACAACTGTCTTCTTTGTGC
AGCTGCAGCTCTATTGTGTTGCTTCTGTGTTCCGATAAAAGGTTTGCCTC
TCCACAACCCGCGACCGCCGACGTTACCGCACAACCCACATACCCACTTG
GTCACCTCTGCCACTTGTTGAGAGGACGCTGAACGCAGACGCCGTCCGGG
CATGAACACCTTATCTCCAAGTTTTCAGCCGCGTGAGACACCTCAAGCCT
GAACAACCGCAGTAATATACGTAATAAACTCCGAGTGGTCTTCATTTGCG
AGCTCCCTGGCGTGCTTTTCCACCACCTCGTTTGCCGTACGGTGATCGAA
GGGTGGTCTGATCTCTCAGTAGCCCTGTCTAGGTTTTTGACTGCTTAGGT
TACGTTGCGCTCTCGCTTGCTTGCTTTCCGGGGGAAACGCGTACGCAGCA
CTTAATAAGTGACTCTCTGTGTCAGCAGAAATTGATGGAGATGCAACTCC
TGCTCGAGGCGTTGTTTGCGAAGAATGCA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig10076:38..1216+

>mRNA_P-canaliculata_contig10076.151.1 ID=mRNA_P-canaliculata_contig10076.151.1|Name=mRNA_P-canaliculata_contig10076.151.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at P-canaliculata_contig10076:38..1216+ (Pelvetia canaliculata dioecious)
ATGCAAACGGACCTCGCTTTATTTAGCCCCGATTCCTGGGGTTTTCATAC
GATGCATGTTGGTTTTTGGCGGTTTGTTCAGGCGCAGTCGAGTAGAGCAA
CCTCGGTAACCGCAGAGAGCATTTTGTACAGGGCAGCAGGCACCCTCAGG
GCTGGAGCGAACGCAAGCAAGTATTCATCATATCCTGTGAGGTGGAAGAT
GCAAACGGACCTCGCTTTATTTAGCCCCGATTCCTGGGGTTTTCATACGA
TGCATGTTGGTTTTTGGCGGTTTGTTCAGGCGCAGTCGAGTAGAGCAACC
TCGGTAACCGCAGAGAGCATTTTGTACAGGGCAGCAGGCACCCTCAGGGC
TGGAGCGAACGCAAGCAAGTATTCATCATATCCTGTGAGGTGGAAGCACT
TAATAAGTGACTCTCTGTGTCAGCAGAAATTGATGGAGATGCAACTCCTG
CTCGAGGCGTTGTTTGCGAAGAATGCACACTTAATAAGTGACTCTCTGTG
TCAGCAGAAATTGATGGAGATGCAACTCCTGCTCGAGGCGTTGTTTGCGA
AGAATGCA
back to top