mRNA_P-canaliculata_contig100742.148.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100742.148.1
Unique NamemRNA_P-canaliculata_contig100742.148.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig100742.148.1 vs. uniprot
Match: A0A518EUS2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EUS2_9BACT)

HSP 1 Score: 251 bits (642), Expect = 1.220e-78
Identity = 115/170 (67.65%), Postives = 141/170 (82.94%), Query Frame = 1 
Query:   25 CAGPGTERNLAPLFSSFSAADDATEVEALGGMVLTRRDPVTGERDYWAVRPIVSNRYKENGDRFAWFLPPLGFSSKDAGTGTRIAQLLPIARYHTSQEVSGFWNWSLLVIPGIYWASHGDGRVQRAFFPFYGVFEKFLSVDRARFLLFPLWFQVQRYGRTTNHYLFPIFA 534
            CAGP +ER L+PLFSS SAA    E+EALGG  L+RR+P TG+RDYWA+RP++SNR+ E GDRF WFLPPLGF  +D+  GTR+AQ +P+ARY T +E SGF  WSLLVIPG+YW++H DGRVQRAFFPF+GV EKFLS+DR  F LFPLW +V+RYGRTT+H+LFPIF+
Sbjct:   11 CAGPNSERVLSPLFSSHSAAGGIPEIEALGGAYLSRRNPSTGQRDYWAIRPLLSNRFDEKGDRFTWFLPPLGFIDEDSERGTRVAQFVPLARYATLREESGFKTWSLLVIPGLYWSAHEDGRVQRAFFPFFGVVEKFLSLDRGTFALFPLWLRVERYGRTTDHFLFPIFS 180
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BLAST of mRNA_P-canaliculata_contig100742.148.1 vs. uniprot
Match: A0A523PG03_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PG03_9BACT)

HSP 1 Score: 164 bits (414), Expect = 6.930e-45
Identity = 82/170 (48.24%), Postives = 108/170 (63.53%), Query Frame = 1 
Query:   25 CAGPGTERNLAPLFSSFSAADDATEVEALGGMVLTRRDPVTGERDYWAVRPIVSNRYKENGDRFAWFLPPLGFSSKDAGTGTRIAQLLPIARYHTSQEVSGFWNWSLLVIPGIYWASHGDGRVQRAFFPFYGVFEKFLSVDRARFLLFPLWFQVQRYGRTTNHYLFPIFA 534
            CA    ER++AP+FS FS A      E++GGM ++ +  + G  DYWA+RP+ S R  ENG+RF WFLPPLG  +       R+ QLLPIARY    +      WS L +PGIYWA   DGR+ RA+FPF GV ++F S DR  F +FPL+ + +R GR T H+LFPIF+
Sbjct:   37 CASVYDERHVAPVFSRFSPAGGGIGTESVGGMFVSHKPGLEGPLDYWAIRPLYSKRVAENGNRFYWFLPPLG--TYKVRERERVWQLLPIARYQWRLDEGDTERWSFLSLPGIYWAKTSDGRIVRAWFPFGGVADEFFSFDRLEFFMFPLFVRTERNGRRTTHFLFPIFS 204
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BLAST of mRNA_P-canaliculata_contig100742.148.1 vs. uniprot
Match: A0A2D5W8Y1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5W8Y1_9BACT)

HSP 1 Score: 150 bits (379), Expect = 1.130e-39
Identity = 84/173 (48.55%), Postives = 104/173 (60.12%), Query Frame = 1 
Query:   16 LGACAGPGTERNLAPLFSSFSAADDATEVEALGGMVLTRRDPVTGERDYWAVRPIVSNRYKENGDRFAWFLPPLGFSSKDAGTGTRIAQLLPIARYHTSQEVSGFWNWSLLVIPGIYWASHGDGRVQRAFFPFYGVFEKFLSVDRARFLLFPLWFQVQRYGRTTNHYLFPIFA 534
            L +CA    ER+LAPLF+  S A+   E EALGG+  +RR    G    WA+RP  S   K +G+  + FLPPLG  S  A     I Q LPI RY  S +  G   WSLL +PG+YW+   DGRV RA FP  GV E+ +S DR  FLLFPL+ Q QR+GRTT H+L P F+
Sbjct:   41 LSSCASFDQERHLAPLFTQLSLAEGGVETEALGGLWKSRRHVPGGVASSWALRPFFSRSVKWDGETSSQFLPPLG--SAHASHNEWIWQFLPIVRYQRSVDELGREEWSLLALPGVYWSKKTDGRVLRAAFPIAGVLERSMSYDRVAFLLFPLFAQTQRHGRTTWHFLAPFFS 211
[Close]
BLAST of mRNA_P-canaliculata_contig100742.148.1 vs. uniprot
Match: A0A518D2Y2_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Pla163 TaxID=2528008 RepID=A0A518D2Y2_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 2.120e-19
Identity = 66/194 (34.02%), Postives = 100/194 (51.55%), Query Frame = 1 
Query:    1 LGLLGLGACAGPGTERNLAPLFSSFSAADDATEVEALGGMVLTRRDPVTGERDYWAVRPIVSNRYKENGDRFAWFLPPLGF--SSKDAGTGTRIAQLLPIARYHTSQEVSGFWNWS----------------LLVIPGIYWASHGDGRVQRAFFPFYGVFEKFLSVDRARFLLFPLWFQVQRYGRTTNHYLFPI 528
            L L+   ACA   ++ +LAP ++  + ADD  E EALGG  L RR   TGE +  A++P+VS R     +    FL PLG+  S  D+  G     +LP+  + T+    G W++                 +L++PG  W+ +  G  +   FP YG  +KFL+ DR RF+LFPL+   +R    T++ LFP+
Sbjct:   20 LALVLTSACASVDSDIHLAPFWTQSATADDRIEREALGGAYLERRFEPTGELEVRALKPLVSWRQVGPEEEKVEFLAPLGYWRSKVDSTWGL----MLPLLYWRTAP---GDWSFEARGVEAPPEAPEREIDVLLLPGFIWSRNARGASKFGIFPIYGELDKFLTWDRVRFVLFPLYVSARRGKSVTHNVLFPV 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100742.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A518EUS2_9BACT1.220e-7867.65Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A523PG03_9BACT6.930e-4548.24Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2D5W8Y1_9BACT1.130e-3948.55Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A518D2Y2_9BACT2.120e-1934.02Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100742contigP-canaliculata_contig100742:478..1011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size534
Cds size534
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.2695994-CDS-P-canaliculata_contig100742:477..10111622815581.2695994-CDS-P-canaliculata_contig100742:477..1011Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100742 478..1011 +
1693494149.2320297-CDS-P-canaliculata_contig100742:477..10111693494149.2320297-CDS-P-canaliculata_contig100742:477..1011Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100742 478..1011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100742.148.1prot_P-canaliculata_contig100742.148.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100742 478..1011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100742.148.1

>prot_P-canaliculata_contig100742.148.1 ID=prot_P-canaliculata_contig100742.148.1|Name=mRNA_P-canaliculata_contig100742.148.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=178bp
LGLLGLGACAGPGTERNLAPLFSSFSAADDATEVEALGGMVLTRRDPVTG
ERDYWAVRPIVSNRYKENGDRFAWFLPPLGFSSKDAGTGTRIAQLLPIAR
YHTSQEVSGFWNWSLLVIPGIYWASHGDGRVQRAFFPFYGVFEKFLSVDR
ARFLLFPLWFQVQRYGRTTNHYLFPIFA
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mRNA from alignment at P-canaliculata_contig100742:478..1011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100742.148.1 ID=mRNA_P-canaliculata_contig100742.148.1|Name=mRNA_P-canaliculata_contig100742.148.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at P-canaliculata_contig100742:478..1011+ (Pelvetia canaliculata dioecious)
CTAGGGCTCCTCGGGCTTGGTGCCTGCGCGGGTCCGGGCACGGAACGTAA
CCTGGCGCCACTCTTCTCGTCGTTCTCTGCGGCCGACGACGCCACCGAGG
TGGAGGCCCTTGGCGGGATGGTCCTCACTAGGCGAGACCCCGTCACCGGC
GAACGGGACTACTGGGCGGTGCGGCCCATCGTCTCCAATCGCTATAAGGA
AAACGGTGATCGCTTCGCCTGGTTCCTGCCGCCCCTTGGCTTCAGCAGCA
AAGACGCCGGGACCGGAACCCGAATAGCCCAACTCCTCCCCATCGCGCGC
TACCACACCTCCCAAGAGGTCAGTGGTTTCTGGAACTGGTCGCTGCTAGT
CATTCCGGGGATCTACTGGGCCTCCCACGGCGACGGGCGCGTGCAGAGGG
CCTTCTTCCCCTTCTACGGCGTCTTTGAGAAGTTCCTGTCCGTCGACCGT
GCGCGCTTCCTGCTGTTTCCATTGTGGTTCCAGGTCCAACGCTACGGCCG
CACGACCAACCACTATCTCTTCCCGATCTTCGCG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100742:478..1011+

>mRNA_P-canaliculata_contig100742.148.1 ID=mRNA_P-canaliculata_contig100742.148.1|Name=mRNA_P-canaliculata_contig100742.148.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at P-canaliculata_contig100742:478..1011+ (Pelvetia canaliculata dioecious)
CTAGGGCTCCTCGGGCTTGGTGCCTGCGCGGGTCCGGGCACGGAACGTAA
CCTGGCGCCACTCTTCTCGTCGTTCTCTGCGGCCGACGACGCCACCGAGG
TGGAGGCCCTTGGCGGGATGGTCCTCACTAGGCGAGACCCCGTCACCGGC
GAACGGGACTACTGGGCGGTGCGGCCCATCGTCTCCAATCGCTATAAGGA
AAACGGTGATCGCTTCGCCTGGTTCCTGCCGCCCCTTGGCTTCAGCAGCA
AAGACGCCGGGACCGGAACCCGAATAGCCCAACTCCTCCCCATCGCGCGC
TACCACACCTCCCAAGAGGTCAGTGGTTTCTGGAACTGGTCGCTGCTAGT
CATTCCGGGGATCTACTGGGCCTCCCACGGCGACGGGCGCGTGCAGAGGG
CCTTCTTCCCCTTCTACGGCGTCTTTGAGAAGTTCCTGTCCGTCGACCGT
GCGCGCTTCCTGCTGTTTCCATTGTGGTTCCAGGTCCAACGCTACGGCCG
CACGACCAACCACTATCTCTTCCCGATCTTCGCGCTAGGGCTCCTCGGGC
TTGGTGCCTGCGCGGGTCCGGGCACGGAACGTAACCTGGCGCCACTCTTC
TCGTCGTTCTCTGCGGCCGACGACGCCACCGAGGTGGAGGCCCTTGGCGG
GATGGTCCTCACTAGGCGAGACCCCGTCACCGGCGAACGGGACTACTGGG
CGGTGCGGCCCATCGTCTCCAATCGCTATAAGGAAAACGGTGATCGCTTC
GCCTGGTTCCTGCCGCCCCTTGGCTTCAGCAGCAAAGACGCCGGGACCGG
AACCCGAATAGCCCAACTCCTCCCCATCGCGCGCTACCACACCTCCCAAG
AGGTCAGTGGTTTCTGGAACTGGTCGCTGCTAGTCATTCCGGGGATCTAC
TGGGCCTCCCACGGCGACGGGCGCGTGCAGAGGGCCTTCTTCCCCTTCTA
CGGCGTCTTTGAGAAGTTCCTGTCCGTCGACCGTGCGCGCTTCCTGCTGT
TTCCATTGTGGTTCCAGGTCCAACGCTACGGCCGCACGACCAACCACTAT
CTCTTCCCGATCTTCGCG
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