Homology
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Match:
A0A518HN18_9BACT (Ankyrin repeat protein n=2 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HN18_9BACT)
HSP 1 Score: 131 bits (330), Expect = 4.220e-36
Identity = 62/111 (55.86%), Postives = 78/111 (70.27%), Query Frame = 1
Query: 1 MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMFALQCRNFDIANHLLDRGADASAEMADGPRSSVLGLCCNFAYFDSENHDQWITLAVRLLDQG 333
M K KR+FKAI+DDD L+++L + DAIE+ G HNR VRDKTPLM+ALQC N +A HLLDRGA+ SA M DGPR SV+ +C A+ + HD+WI +RLLD G
Sbjct: 4 MKKADIKRMFKAIEDDDQQTLDSLLNTNDDAIESHGFHNRLVRDKTPLMYALQCFNLKLAGHLLDRGANPSAVMPDGPRHSVIQMCIARAFCNKSTHDEWIAFTIRLLDAG 114
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Match:
A0A4R5HH35_9ALTE (Ankyrin repeat domain-containing protein n=1 Tax=Alteromonadaceae bacterium M269 TaxID=2546219 RepID=A0A4R5HH35_9ALTE)
HSP 1 Score: 115 bits (288), Expect = 2.540e-30
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 1
Query: 1 MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMFALQCRNFDIANHLLDRGADASAEMADGPRSSVLGLCCNFAYFDSENHDQWITLAVRLLDQGAN 339
M KT TK+LF AIQ D + +I+ ++ AIE++G+HN RDKTPLMFA+QC +F++A L+D GA+ A+M DGP SSV+ L +F + + N D+WI L RL++ GAN
Sbjct: 1 MTKTETKKLFVAIQKHDHETVFSIIEKNEGAIESVGQHNAYCRDKTPLMFAMQCEDFELAYKLMDIGANVRAKMLDGPESSVIQLAASFGHSLNPNFDKWIGLIQRLIENGAN 113
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Match:
UPI0016024DEC (hypothetical protein n=1 Tax=unclassified Pseudoalteromonas TaxID=194690 RepID=UPI0016024DEC)
HSP 1 Score: 107 bits (266), Expect = 5.170e-27
Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = 1
Query: 1 MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMFALQCRNFDIANHLLDRGADASAEMADGPRSSVLGLCCNFAYFDSENHDQWITLAVRLLDQGAN 339
M K K+LF AI+ D ++ IL + IE +G HN N RDKTPLM+A+QC +F++AN L++ GA+ A+M GP +SV+ L F + + N D+W++ +L++QGAN
Sbjct: 1 MTKAEIKKLFVAIEKHDQDSVLGILAKDKGVIETVGHHNANCRDKTPLMYAMQCEDFELANKLIELGANVKAKMPAGPETSVIQLAVKFGHGLNPNFDKWLSFTQKLIEQGAN 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 4.22e-36 / Id = 55.86 Expect = 2.54e-30 / Id = 48.67 Expect = 5.17e-27 / Id = 42.48 Sequence A0A518HN18_9BACT A0A4R5HH35_9ALTE UPI0016024DEC back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 339 Cds size 339 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622815581.1018162-CDS-P-canaliculata_contig100725:48..387 1622815581.1018162-CDS-P-canaliculata_contig100725:48..387 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100725 49..387 + 1693494149.15596-CDS-P-canaliculata_contig100725:48..387 1693494149.15596-CDS-P-canaliculata_contig100725:48..387 Pelvetia canaliculata dioecious CDS P-canaliculata_contig100725 49..387 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100725.146.1
>prot_P-canaliculata_contig100725.146.1 ID=prot_P-canaliculata_contig100725.146.1|Name=mRNA_P-canaliculata_contig100725.146.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=113bp
MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMF back to top mRNA from alignment at P-canaliculata_contig100725:49..387+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100725.146.1 ID=mRNA_P-canaliculata_contig100725.146.1|Name=mRNA_P-canaliculata_contig100725.146.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at P-canaliculata_contig100725:49..387+ (Pelvetia canaliculata dioecious)ATGAACAAAACGACGACAAAGCGACTATTCAAGGCAATACAGGATGATGA
TGCTGCCGCATTAAACGCAATTCTTGGTGAGCACGCAGACGCCATAGAGG
CAATCGGCGAACACAATCGCAACGTTCGTGACAAAACTCCGCTAATGTTC
GCTTTGCAATGCCGCAACTTCGATATAGCGAATCACCTGCTCGACCGAGG
CGCAGATGCGTCTGCGGAAATGGCTGATGGCCCTCGCTCTTCCGTGTTGG
GACTTTGTTGCAATTTTGCCTATTTTGATTCCGAAAACCACGATCAATGG
ATCACTCTTGCCGTACGCCTATTAGATCAAGGTGCGAAC back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100725:49..387+
>mRNA_P-canaliculata_contig100725.146.1 ID=mRNA_P-canaliculata_contig100725.146.1|Name=mRNA_P-canaliculata_contig100725.146.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at P-canaliculata_contig100725:49..387+ (Pelvetia canaliculata dioecious) back to top