mRNA_P-canaliculata_contig100725.146.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100725.146.1
Unique NamemRNA_P-canaliculata_contig100725.146.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Match: A0A518HN18_9BACT (Ankyrin repeat protein n=2 Tax=Stieleria neptunia TaxID=2527979 RepID=A0A518HN18_9BACT)

HSP 1 Score: 131 bits (330), Expect = 4.220e-36
Identity = 62/111 (55.86%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    1 MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMFALQCRNFDIANHLLDRGADASAEMADGPRSSVLGLCCNFAYFDSENHDQWITLAVRLLDQG 333
            M K   KR+FKAI+DDD   L+++L  + DAIE+ G HNR VRDKTPLM+ALQC N  +A HLLDRGA+ SA M DGPR SV+ +C   A+ +   HD+WI   +RLLD G
Sbjct:    4 MKKADIKRMFKAIEDDDQQTLDSLLNTNDDAIESHGFHNRLVRDKTPLMYALQCFNLKLAGHLLDRGANPSAVMPDGPRHSVIQMCIARAFCNKSTHDEWIAFTIRLLDAG 114
[Close]
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Match: A0A4R5HH35_9ALTE (Ankyrin repeat domain-containing protein n=1 Tax=Alteromonadaceae bacterium M269 TaxID=2546219 RepID=A0A4R5HH35_9ALTE)

HSP 1 Score: 115 bits (288), Expect = 2.540e-30
Identity = 55/113 (48.67%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:    1 MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMFALQCRNFDIANHLLDRGADASAEMADGPRSSVLGLCCNFAYFDSENHDQWITLAVRLLDQGAN 339
            M KT TK+LF AIQ  D   + +I+ ++  AIE++G+HN   RDKTPLMFA+QC +F++A  L+D GA+  A+M DGP SSV+ L  +F +  + N D+WI L  RL++ GAN
Sbjct:    1 MTKTETKKLFVAIQKHDHETVFSIIEKNEGAIESVGQHNAYCRDKTPLMFAMQCEDFELAYKLMDIGANVRAKMLDGPESSVIQLAASFGHSLNPNFDKWIGLIQRLIENGAN 113
[Close]
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Match: UPI0016024DEC (hypothetical protein n=1 Tax=unclassified Pseudoalteromonas TaxID=194690 RepID=UPI0016024DEC)

HSP 1 Score: 107 bits (266), Expect = 5.170e-27
Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:    1 MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMFALQCRNFDIANHLLDRGADASAEMADGPRSSVLGLCCNFAYFDSENHDQWITLAVRLLDQGAN 339
            M K   K+LF AI+  D  ++  IL +    IE +G HN N RDKTPLM+A+QC +F++AN L++ GA+  A+M  GP +SV+ L   F +  + N D+W++   +L++QGAN
Sbjct:    1 MTKAEIKKLFVAIEKHDQDSVLGILAKDKGVIETVGHHNANCRDKTPLMYAMQCEDFELANKLIELGANVKAKMPAGPETSVIQLAVKFGHGLNPNFDKWLSFTQKLIEQGAN 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100725.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A518HN18_9BACT4.220e-3655.86Ankyrin repeat protein n=2 Tax=Stieleria neptunia ... [more]
A0A4R5HH35_9ALTE2.540e-3048.67Ankyrin repeat domain-containing protein n=1 Tax=A... [more]
UPI0016024DEC5.170e-2742.48hypothetical protein n=1 Tax=unclassified Pseudoal... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100725contigP-canaliculata_contig100725:49..387 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size339
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.1018162-CDS-P-canaliculata_contig100725:48..3871622815581.1018162-CDS-P-canaliculata_contig100725:48..387Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100725 49..387 +
1693494149.15596-CDS-P-canaliculata_contig100725:48..3871693494149.15596-CDS-P-canaliculata_contig100725:48..387Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100725 49..387 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100725.146.1prot_P-canaliculata_contig100725.146.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100725 49..387 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100725.146.1

>prot_P-canaliculata_contig100725.146.1 ID=prot_P-canaliculata_contig100725.146.1|Name=mRNA_P-canaliculata_contig100725.146.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=113bp
MNKTTTKRLFKAIQDDDAAALNAILGEHADAIEAIGEHNRNVRDKTPLMF
ALQCRNFDIANHLLDRGADASAEMADGPRSSVLGLCCNFAYFDSENHDQW
ITLAVRLLDQGAN
back to top

mRNA from alignment at P-canaliculata_contig100725:49..387+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100725.146.1 ID=mRNA_P-canaliculata_contig100725.146.1|Name=mRNA_P-canaliculata_contig100725.146.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at P-canaliculata_contig100725:49..387+ (Pelvetia canaliculata dioecious)
ATGAACAAAACGACGACAAAGCGACTATTCAAGGCAATACAGGATGATGA
TGCTGCCGCATTAAACGCAATTCTTGGTGAGCACGCAGACGCCATAGAGG
CAATCGGCGAACACAATCGCAACGTTCGTGACAAAACTCCGCTAATGTTC
GCTTTGCAATGCCGCAACTTCGATATAGCGAATCACCTGCTCGACCGAGG
CGCAGATGCGTCTGCGGAAATGGCTGATGGCCCTCGCTCTTCCGTGTTGG
GACTTTGTTGCAATTTTGCCTATTTTGATTCCGAAAACCACGATCAATGG
ATCACTCTTGCCGTACGCCTATTAGATCAAGGTGCGAAC
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig100725:49..387+

>mRNA_P-canaliculata_contig100725.146.1 ID=mRNA_P-canaliculata_contig100725.146.1|Name=mRNA_P-canaliculata_contig100725.146.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at P-canaliculata_contig100725:49..387+ (Pelvetia canaliculata dioecious)
ATGAACAAAACGACGACAAAGCGACTATTCAAGGCAATACAGGATGATGA
TGCTGCCGCATTAAACGCAATTCTTGGTGAGCACGCAGACGCCATAGAGG
CAATCGGCGAACACAATCGCAACGTTCGTGACAAAACTCCGCTAATGTTC
GCTTTGCAATGCCGCAACTTCGATATAGCGAATCACCTGCTCGACCGAGG
CGCAGATGCGTCTGCGGAAATGGCTGATGGCCCTCGCTCTTCCGTGTTGG
GACTTTGTTGCAATTTTGCCTATTTTGATTCCGAAAACCACGATCAATGG
ATCACTCTTGCCGTACGCCTATTAGATCAAGGTGCGAACATGAACAAAAC
GACGACAAAGCGACTATTCAAGGCAATACAGGATGATGATGCTGCCGCAT
TAAACGCAATTCTTGGTGAGCACGCAGACGCCATAGAGGCAATCGGCGAA
CACAATCGCAACGTTCGTGACAAAACTCCGCTAATGTTCGCTTTGCAATG
CCGCAACTTCGATATAGCGAATCACCTGCTCGACCGAGGCGCAGATGCGT
CTGCGGAAATGGCTGATGGCCCTCGCTCTTCCGTGTTGGGACTTTGTTGC
AATTTTGCCTATTTTGATTCCGAAAACCACGATCAATGGATCACTCTTGC
CGTACGCCTATTAGATCAAGGTGCGAAC
back to top