mRNA_P-canaliculata_contig100650.141.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-canaliculata_contig100650.141.1
Unique Name	mRNA_P-canaliculata_contig100650.141.1
Type	mRNA
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))

Homology

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BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A2H4FS16_9FLOR (Acyl carrier protein n=4 Tax=Solieriaceae TaxID=31441 RepID=A0A2H4FS16_9FLOR)

HSP 1 Score: 62.8 bits (151), Expect = 7.180e-12
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = 1

Query:    1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHKD 129
            DSLDMVELVMAIEEEF+IDIPDS LE I  V+DA+DYI KH D
Sbjct:   39 DSLDMVELVMAIEEEFNIDIPDSYLEKIVTVNDAVDYIIKHID 81

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BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: R5Q0G4_9PROT (Acyl carrier protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=R5Q0G4_9PROT)

HSP 1 Score: 57.0 bits (136), Expect = 1.280e-9
Identity = 30/41 (73.17%), Postives = 32/41 (78.05%), Query Frame = 1

Query:    1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKH 123
            DSLD VELVMA EEEFS++IPD   E I  V DAIDYISKH
Sbjct:   36 DSLDTVELVMAFEEEFSVEIPDDAAEKILTVQDAIDYISKH 76

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BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A6I4YQL6_9PROT (Acyl carrier protein n=4 Tax=Acetobacteraceae TaxID=433 RepID=A0A6I4YQL6_9PROT)

HSP 1 Score: 56.6 bits (135), Expect = 1.950e-9
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = 1

Query:    1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHK 126
            DSLD VELVMA EE FS++IP+ T E I+ VSDAIDYISK K
Sbjct:   38 DSLDTVELVMAFEEAFSVEIPEDTAEKIATVSDAIDYISKQK 79

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BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: UPI00193BFBA4 (acyl carrier protein n=1 Tax=Clostridium sp. D2Q-11 TaxID=2683708 RepID=UPI00193BFBA4)

HSP 1 Score: 56.2 bits (134), Expect = 2.400e-9
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1

Query:    1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHK 126
            DSLD+VEL+MAIEE+F I+IPD   E ISIV DA+DYI+ +K
Sbjct:   34 DSLDVVELIMAIEEDFEIEIPDEDAEKISIVKDAVDYINNNK 75

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BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A3E0NW23_9BACT (Acyl carrier protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3E0NW23_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 2.580e-9
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 1

Query:    1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKH 123
            DSLD+VELVMA EEEF I+IPD   E IS VS+A+DYI+KH
Sbjct:   35 DSLDIVELVMAFEEEFGIEIPDEDAEKISRVSEAVDYINKH 75

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BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: UPI001A01F844 (Acyl carrier protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI001A01F844)

HSP 1 Score: 55.8 bits (133), Expect = 3.570e-9
Identity = 27/43 (62.79%), Postives = 34/43 (79.07%), Query Frame = 1

Query:    1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHKD 129
            DSLD VELVMA+EEEF ++IPD   E I  V DA++YI+KHK+
Sbjct:   35 DSLDTVELVMALEEEFGVEIPDEDAEQIKTVQDAVNYINKHKE 77

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BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A520Y7Q2_9SPHN (Acyl carrier protein n=3 Tax=Sphingomonadaceae TaxID=41297 RepID=A0A520Y7Q2_9SPHN)

HSP 1 Score: 55.8 bits (133), Expect = 3.660e-9
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1

Query:    1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHK 126
            DSLD+VELVMA EEEF ++IPD   EDI+ V DAI+YI K+K
Sbjct:   36 DSLDIVELVMAFEEEFGVEIPDDAAEDIATVKDAINYIEKNK 77

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BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: W9BZ69_9SPHN (Acyl carrier protein n=8 Tax=Sphingomonadales TaxID=204457 RepID=W9BZ69_9SPHN)

HSP 1 Score: 55.8 bits (133), Expect = 3.660e-9
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1

Query:    1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHK 126
            DSLD+VELVMA EEEF ++IPD   E IS V+DAI+YI  HK
Sbjct:   36 DSLDIVELVMAFEEEFGVEIPDDAAEKISTVNDAIEYIDSHK 77

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BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A081C1H7_9BACT (Acyl carrier protein n=1 Tax=Candidatus Vecturithrix granuli TaxID=1499967 RepID=A0A081C1H7_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 4.950e-9
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 1

Query:    1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKH 123
            DSLD VELVMA+EEEF IDIPD   E+IS V+DAI YI  H
Sbjct:   35 DSLDTVELVMALEEEFGIDIPDEDAENISTVNDAISYIESH 75

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BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Match: A0A3M1R4Q3_9BACT (Acyl carrier protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A3M1R4Q3_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 5.070e-9
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 1

Query:    1 DSLDMVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHKD 129
            DSLD VELVMA+EEEF I+IPD   E I+ V DAIDY+ +HK+
Sbjct:   33 DSLDTVELVMALEEEFGIEIPDEEAEKITTVQDAIDYVLEHKE 75

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig100650.141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2H4FS16_9FLOR	7.180e-12	79.07	Acyl carrier protein n=4 Tax=Solieriaceae TaxID=31...	[more]
R5Q0G4_9PROT	1.280e-9	73.17	Acyl carrier protein n=2 Tax=Alphaproteobacteria T...	[more]
A0A6I4YQL6_9PROT	1.950e-9	71.43	Acyl carrier protein n=4 Tax=Acetobacteraceae TaxI...	[more]
UPI00193BFBA4	2.400e-9	66.67	acyl carrier protein n=1 Tax=Clostridium sp. D2Q-1...	[more]
A0A3E0NW23_9BACT	2.580e-9	70.73	Acyl carrier protein n=1 Tax=Acidobacteria bacteri...	[more]
UPI001A01F844	3.570e-9	62.79	Acyl carrier protein n=1 Tax=Proteobacteria bacter...	[more]
A0A520Y7Q2_9SPHN	3.660e-9	66.67	Acyl carrier protein n=3 Tax=Sphingomonadaceae Tax...	[more]
W9BZ69_9SPHN	3.660e-9	66.67	Acyl carrier protein n=8 Tax=Sphingomonadales TaxI...	[more]
A0A081C1H7_9BACT	4.950e-9	70.73	Acyl carrier protein n=1 Tax=Candidatus Vecturithr...	[more]
A0A3M1R4Q3_9BACT	5.070e-9	65.12	Acyl carrier protein n=1 Tax=Nitrospirae bacterium...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig100650	contig	P-canaliculata_contig100650:892..1023 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	132
Cds size	120
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815580.5837674-CDS-P-canaliculata_contig100650:891..1011	1622815580.5837674-CDS-P-canaliculata_contig100650:891..1011	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100650 892..1011 -
1693494148.8714259-CDS-P-canaliculata_contig100650:891..1011	1693494148.8714259-CDS-P-canaliculata_contig100650:891..1011	Pelvetia canaliculata dioecious	CDS	P-canaliculata_contig100650 892..1011 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815580.5988345-UTR-P-canaliculata_contig100650:1011..1023	1622815580.5988345-UTR-P-canaliculata_contig100650:1011..1023	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig100650 1012..1023 -
1693494148.889627-UTR-P-canaliculata_contig100650:1011..1023	1693494148.889627-UTR-P-canaliculata_contig100650:1011..1023	Pelvetia canaliculata dioecious	UTR	P-canaliculata_contig100650 1012..1023 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig100650.141.1	prot_P-canaliculata_contig100650.141.1	Pelvetia canaliculata dioecious	polypeptide	P-canaliculata_contig100650 892..1011 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-canaliculata_contig100650:892..1023-
coding sequence from alignment at P-canaliculata_contig100650:892..1023-

protein sequence of mRNA_P-canaliculata_contig100650.141.1

>prot_P-canaliculata_contig100650.141.1 ID=prot_P-canaliculata_contig100650.141.1|Name=mRNA_P-canaliculata_contig100650.141.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=40bp
MVELVMAIEEEFSIDIPDSTLEDISIVSDAIDYISKHKD*

mRNA from alignment at P-canaliculata_contig100650:892..1023-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-canaliculata_contig100650.141.1 ID=mRNA_P-canaliculata_contig100650.141.1|Name=mRNA_P-canaliculata_contig100650.141.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=132bp|location=Sequence derived from alignment at P-canaliculata_contig100650:892..1023- (Pelvetia canaliculata dioecious)
GATTCGTTAGATATGGTAGAATTAGTTATGGCTATTGAAGAAGAATTTAG
TATTGACATTCCTGATAGTACTTTAGAAGATATTTCGATCGTTAGTGATG
CTATAGACTATATTAGTAAGCATAAAGATTAA

Coding sequence (CDS) from alignment at P-canaliculata_contig100650:892..1023-

>mRNA_P-canaliculata_contig100650.141.1 ID=mRNA_P-canaliculata_contig100650.141.1|Name=mRNA_P-canaliculata_contig100650.141.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at P-canaliculata_contig100650:892..1023- (Pelvetia canaliculata dioecious)
ATGGTAGAATTAGTTATGGCTATTGAAGAAGAATTTAGTATTGACATTCC
TGATAGTACTTTAGAAGATATTTCGATCGTTAGTGATGCTATAGACTATA
TTAGTAAGCATAAAGATTAAATGGTAGAATTAGTTATGGCTATTGAAGAA
GAATTTAGTATTGACATTCCTGATAGTACTTTAGAAGATATTTCGATCGT
TAGTGATGCTATAGACTATATTAGTAAGCATAAAGATTAA