mRNA_P-canaliculata_contig100650.140.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100650.140.1
Unique NamemRNA_P-canaliculata_contig100650.140.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A2H4FLP2_9FLOR (Photosystem I reaction center subunit II n=4 Tax=Solieriaceae TaxID=31441 RepID=A0A2H4FLP2_9FLOR)

HSP 1 Score: 268 bits (685), Expect = 8.220e-91
Identity = 128/138 (92.75%), Postives = 132/138 (95.65%), Query Frame = 1
Query:    1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
            MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTS IEQ+FEMPTGGAAIMR+GDNLLYLAKKEQCLALS QLK KFKI DFKIYRIFP+GEVQYLHPKDGVFPEKANPGRKG+GNINHSIGKNDN VNKKFTGKA YE
Sbjct:    1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKIEQFFEMPTGGAAIMRQGDNLLYLAKKEQCLALSAQLKNKFKINDFKIYRIFPTGEVQYLHPKDGVFPEKANPGRKGIGNINHSIGKNDNAVNKKFTGKANYE 138          
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A7M1VJW9_SARSK (Photosystem I reaction center subunit II n=4 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A7M1VJW9_SARSK)

HSP 1 Score: 256 bits (655), Expect = 3.420e-86
Identity = 122/137 (89.05%), Postives = 130/137 (94.89%), Query Frame = 1
Query:    4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
            I+LKMPSPTFGGSTGGWLR+AEIEEKYAITWTS  EQ FEMPTGGAAIMREGDNLLYLAKKEQCLALS QLKK FKI DFKIYRIFP+GEVQYLHPKDG+FPEK NPGR+GVGNI+HSIGKN+NPVNKKFTG+ATYE
Sbjct:    5 INLKMPSPTFGGSTGGWLRSAEIEEKYAITWTSKSEQIFEMPTGGAAIMREGDNLLYLAKKEQCLALSAQLKKNFKINDFKIYRIFPNGEVQYLHPKDGMFPEKVNPGREGVGNISHSIGKNENPVNKKFTGQATYE 141          
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A1C9CBY2_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Asparagopsis taxiformis TaxID=260499 RepID=A0A1C9CBY2_9FLOR)

HSP 1 Score: 256 bits (654), Expect = 4.860e-86
Identity = 123/137 (89.78%), Postives = 129/137 (94.16%), Query Frame = 1
Query:    4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
            IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTS  EQ FEMPTGG+A+MRE DNLLYLAKKEQCLALSTQLK KFKI+DFKIYRIFP+GEVQYLHPKDGV PEK+NPGR GVGNI HSIG+NDNPVNKKFTGKATYE
Sbjct:    5 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKKEQIFEMPTGGSAVMREDDNLLYLAKKEQCLALSTQLKTKFKIKDFKIYRIFPNGEVQYLHPKDGVAPEKSNPGRTGVGNIQHSIGQNDNPVNKKFTGKATYE 141          
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A4D6WS29_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Dicranema revolutum TaxID=239144 RepID=A0A4D6WS29_9FLOR)

HSP 1 Score: 256 bits (653), Expect = 6.910e-86
Identity = 121/138 (87.68%), Postives = 128/138 (92.75%), Query Frame = 1
Query:    1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
            +ID+ MPSP FGGSTGGWL A EIEEKYAITWTS IEQ FEMPTGGAAIMREGDNLLYLAKKEQCLALS+QL+ KFKIRDFKIYRIFPSGE QYLHPKDGVFPEK NPGR+G+GNI HSIGKNDNPVNKKFTG+ATYE
Sbjct:    4 LIDVTMPSPIFGGSTGGWLEAGEIEEKYAITWTSKIEQIFEMPTGGAAIMREGDNLLYLAKKEQCLALSSQLRTKFKIRDFKIYRIFPSGEAQYLHPKDGVFPEKVNPGREGIGNIQHSIGKNDNPVNKKFTGQATYE 141          
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A4D6WX20_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Hypnea pannosa TaxID=105607 RepID=A0A4D6WX20_9FLOR)

HSP 1 Score: 254 bits (650), Expect = 1.980e-85
Identity = 124/137 (90.51%), Postives = 127/137 (92.70%), Query Frame = 1
Query:    4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
            I+LKMPSPTFGGSTGGWLRAAEIEEKYAITWTS  EQ FEMPTGGAAIMREGDNLLYLAKKEQCLAL TQL KKFKI DFKIYRIFPSGEVQYLHPKDGVFPEK N GR+GVGNI HSIGKN NPVNKKF+GKATYE
Sbjct:    5 INLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKKEQCFEMPTGGAAIMREGDNLLYLAKKEQCLALGTQLTKKFKINDFKIYRIFPSGEVQYLHPKDGVFPEKVNSGREGVGNIQHSIGKNKNPVNKKFSGKATYE 141          
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: M5DBT5_CHOCR (Photosystem I reaction center subunit II n=1 Tax=Chondrus crispus TaxID=2769 RepID=M5DBT5_CHOCR)

HSP 1 Score: 253 bits (647), Expect = 5.680e-85
Identity = 120/137 (87.59%), Postives = 128/137 (93.43%), Query Frame = 1
Query:    4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
            I+ KMPSPTFGGSTGGWLR+AEIEEKYAITWTS  EQ FEMPTGGAAIMREGDNLLYLAKKEQCLALS QL+K FKIRDFKIYRIFP+GEVQYLHPKDGVFPEK NPGR+GVGNI+HSIGKN+NPVN KFTG+ TYE
Sbjct:    5 INFKMPSPTFGGSTGGWLRSAEIEEKYAITWTSKSEQIFEMPTGGAAIMREGDNLLYLAKKEQCLALSAQLRKSFKIRDFKIYRIFPNGEVQYLHPKDGVFPEKVNPGREGVGNISHSIGKNENPVNTKFTGRGTYE 141          
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: R9XYS9_9FLOR (Photosystem I reaction center subunit II n=6 Tax=Florideophyceae TaxID=2806 RepID=R9XYS9_9FLOR)

HSP 1 Score: 253 bits (645), Expect = 8.760e-85
Identity = 122/133 (91.73%), Postives = 125/133 (93.98%), Query Frame = 1
Query:   16 MPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
            MPSPTFGGSTGGWLRAAEIEEKYAITWTS  EQ FEMPTGGAAIMREG+NLLYLAKKEQCLALSTQL+ KFKI DFKIYRIFP GEVQYLHPKDGVFPEKANPGR+ VGNI HSIGKNDNPVNKKFTGKATYE
Sbjct:    1 MPSPTFGGSTGGWLRAAEIEEKYAITWTSKSEQIFEMPTGGAAIMREGNNLLYLAKKEQCLALSTQLRAKFKITDFKIYRIFPDGEVQYLHPKDGVFPEKANPGRESVGNIQHSIGKNDNPVNKKFTGKATYE 133          
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A1C9C7E3_RHOPU (Photosystem I reaction center subunit II n=1 Tax=Rhodymenia pseudopalmata TaxID=31502 RepID=A0A1C9C7E3_RHOPU)

HSP 1 Score: 253 bits (645), Expect = 1.150e-84
Identity = 120/138 (86.96%), Postives = 130/138 (94.20%), Query Frame = 1
Query:    1 MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
            +I+L+MPSPTFGGSTGGWLRAAEIEEK+AITWTS  E  FEMPTGGAAIMREG+NLLYLAKKEQCLALS QLK KFKI+DFKIYR+FP+GEVQYLHPKDGVFPEK NPGR+GVGNI HSIGKNDNPVNKKFTG+ATYE
Sbjct:    4 IINLEMPSPTFGGSTGGWLRAAEIEEKHAITWTSKEETVFEMPTGGAAIMREGNNLLYLAKKEQCLALSAQLKSKFKIKDFKIYRVFPNGEVQYLHPKDGVFPEKVNPGREGVGNIEHSIGKNDNPVNKKFTGQATYE 141          
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A4D6X164_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Spermothamnion repens TaxID=31383 RepID=A0A4D6X164_9FLOR)

HSP 1 Score: 252 bits (644), Expect = 1.630e-84
Identity = 121/137 (88.32%), Postives = 128/137 (93.43%), Query Frame = 1
Query:    4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
            ID KMPSPTFGGSTGGWLRAAEIEEKYAITW S  EQ FEMPTGG+AIM EGDNLLYLAKKEQCLALS+QLK  FKI++FKIYRIFP+GEVQYLHPKDGVFPEKAN GR+GVGNINHSIGKNDNPVNKKFTG+ATYE
Sbjct:    5 IDFKMPSPTFGGSTGGWLRAAEIEEKYAITWISKAEQIFEMPTGGSAIMTEGDNLLYLAKKEQCLALSSQLKTAFKIKNFKIYRIFPNGEVQYLHPKDGVFPEKANQGREGVGNINHSIGKNDNPVNKKFTGQATYE 141          
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Match: A0A342RZJ1_9FLOR (Photosystem I reaction center subunit II n=1 Tax=Mastocarpus papillatus TaxID=31436 RepID=A0A342RZJ1_9FLOR)

HSP 1 Score: 251 bits (640), Expect = 6.630e-84
Identity = 119/137 (86.86%), Postives = 126/137 (91.97%), Query Frame = 1
Query:    4 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIMREGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDGVFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE 414
            IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTS  EQ FEMPTGG+AIMRE DNLLYLAKKEQCLALSTQLK  FKI DFKIYRIFP+GEVQYLHPKDGVFPEK NPGRK +G I HSIGKN+NP++KKFTG+ATYE
Sbjct:    5 IDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSKTEQIFEMPTGGSAIMREDDNLLYLAKKEQCLALSTQLKTSFKINDFKIYRIFPNGEVQYLHPKDGVFPEKVNPGRKSIGKIEHSIGKNENPISKKFTGEATYE 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100650.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2H4FLP2_9FLOR8.220e-9192.75Photosystem I reaction center subunit II n=4 Tax=S... [more]
A0A7M1VJW9_SARSK3.420e-8689.05Photosystem I reaction center subunit II n=4 Tax=R... [more]
A0A1C9CBY2_9FLOR4.860e-8689.78Photosystem I reaction center subunit II n=1 Tax=A... [more]
A0A4D6WS29_9FLOR6.910e-8687.68Photosystem I reaction center subunit II n=1 Tax=D... [more]
A0A4D6WX20_9FLOR1.980e-8590.51Photosystem I reaction center subunit II n=1 Tax=H... [more]
M5DBT5_CHOCR5.680e-8587.59Photosystem I reaction center subunit II n=1 Tax=C... [more]
R9XYS9_9FLOR8.760e-8591.73Photosystem I reaction center subunit II n=6 Tax=F... [more]
A0A1C9C7E3_RHOPU1.150e-8486.96Photosystem I reaction center subunit II n=1 Tax=R... [more]
A0A4D6X164_9FLOR1.630e-8488.32Photosystem I reaction center subunit II n=1 Tax=S... [more]
A0A342RZJ1_9FLOR6.630e-8486.86Photosystem I reaction center subunit II n=1 Tax=M... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100650contigP-canaliculata_contig100650:264..680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.1
Seed ortholog evalue1e-56
Seed eggNOG ortholog55529.AAC35693
Preferred namepsaD
KEGG koko:K02692
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00163
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009941,GO:0010287,GO:0016020,GO:0019904,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs28I81@1,2QQIC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.5354903-CDS-P-canaliculata_contig100650:263..6801622815580.5354903-CDS-P-canaliculata_contig100650:263..680Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100650 264..680 +
1693494148.8526988-CDS-P-canaliculata_contig100650:263..6801693494148.8526988-CDS-P-canaliculata_contig100650:263..680Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100650 264..680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100650.140.1prot_P-canaliculata_contig100650.140.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100650 264..680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100650.140.1

>prot_P-canaliculata_contig100650.140.1 ID=prot_P-canaliculata_contig100650.140.1|Name=mRNA_P-canaliculata_contig100650.140.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=139bp
MIDLKMPSPTFGGSTGGWLRAAEIEEKYAITWTSTIEQYFEMPTGGAAIM
REGDNLLYLAKKEQCLALSTQLKKKFKIRDFKIYRIFPSGEVQYLHPKDG
VFPEKANPGRKGVGNINHSIGKNDNPVNKKFTGKATYE*
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mRNA from alignment at P-canaliculata_contig100650:264..680+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100650.140.1 ID=mRNA_P-canaliculata_contig100650.140.1|Name=mRNA_P-canaliculata_contig100650.140.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at P-canaliculata_contig100650:264..680+ (Pelvetia canaliculata dioecious)
ATGATAGATTTAAAAATGCCATCTCCAACATTTGGAGGAAGCACTGGCGG ATGGTTAAGAGCAGCTGAAATAGAAGAAAAATATGCTATTACATGGACCA GTACAATAGAACAGTATTTTGAAATGCCAACTGGTGGAGCCGCTATAATG CGTGAAGGAGATAACTTATTGTACTTAGCTAAAAAGGAACAATGTTTAGC ATTAAGTACTCAATTAAAAAAGAAATTTAAAATTCGTGATTTTAAAATAT ATAGAATTTTTCCAAGCGGAGAGGTGCAATACTTGCATCCTAAAGATGGA GTATTCCCAGAAAAAGCAAATCCAGGACGTAAAGGAGTAGGAAATATAAA CCATTCTATAGGGAAAAATGATAATCCAGTAAATAAAAAGTTTACTGGTA AAGCAACTTATGAATAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100650:264..680+

>mRNA_P-canaliculata_contig100650.140.1 ID=mRNA_P-canaliculata_contig100650.140.1|Name=mRNA_P-canaliculata_contig100650.140.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at P-canaliculata_contig100650:264..680+ (Pelvetia canaliculata dioecious)
ATGATAGATTTAAAAATGCCATCTCCAACATTTGGAGGAAGCACTGGCGG
ATGGTTAAGAGCAGCTGAAATAGAAGAAAAATATGCTATTACATGGACCA
GTACAATAGAACAGTATTTTGAAATGCCAACTGGTGGAGCCGCTATAATG
CGTGAAGGAGATAACTTATTGTACTTAGCTAAAAAGGAACAATGTTTAGC
ATTAAGTACTCAATTAAAAAAGAAATTTAAAATTCGTGATTTTAAAATAT
ATAGAATTTTTCCAAGCGGAGAGGTGCAATACTTGCATCCTAAAGATGGA
GTATTCCCAGAAAAAGCAAATCCAGGACGTAAAGGAGTAGGAAATATAAA
CCATTCTATAGGGAAAAATGATAATCCAGTAAATAAAAAGTTTACTGGTA
AAGCAACTTATGAATAGATGATAGATTTAAAAATGCCATCTCCAACATTT
GGAGGAAGCACTGGCGGATGGTTAAGAGCAGCTGAAATAGAAGAAAAATA
TGCTATTACATGGACCAGTACAATAGAACAGTATTTTGAAATGCCAACTG
GTGGAGCCGCTATAATGCGTGAAGGAGATAACTTATTGTACTTAGCTAAA
AAGGAACAATGTTTAGCATTAAGTACTCAATTAAAAAAGAAATTTAAAAT
TCGTGATTTTAAAATATATAGAATTTTTCCAAGCGGAGAGGTGCAATACT
TGCATCCTAAAGATGGAGTATTCCCAGAAAAAGCAAATCCAGGACGTAAA
GGAGTAGGAAATATAAACCATTCTATAGGGAAAAATGATAATCCAGTAAA
TAAAAAGTTTACTGGTAAAGCAACTTATGAATAG
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