mRNA_P-canaliculata_contig1006.129.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig1006.129.1
Unique NamemRNA_P-canaliculata_contig1006.129.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig1006.129.1 vs. uniprot
Match: A0A6A6PSK7_9PEZI (Uncharacterized protein n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PSK7_9PEZI)

HSP 1 Score: 104 bits (260), Expect = 3.050e-23
Identity = 56/126 (44.44%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    1 PNGQTLTTDEPCDPEANASACCPSSAFCLSGGMCIEAGTVSRGSCTDANWDSSACASFCREESPDQNVPMILC---AGNDTFSCGLS--GQCNVN-----LPSDVQVVLRQTQIQSLLDTLADSAS 348
            P+G TL++D PC+P A ASACC + +FCL GG C   G V+RGSCTD  W+S  CA FC+    D   P+  C      ++F CGL   GQC+ N     L S V +VLR  Q+  L+ T   S+S
Sbjct:   29 PDGNTLSSDIPCNPNATASACCNAQSFCLVGGGCFTGGVVTRGSCTDKTWNSPECAQFCQTVGTDGETPITPCNTGVSTNSFVCGLDTGGQCDDNAKTFTLASSVSIVLRPAQVNQLVGTAIASSS 154          
BLAST of mRNA_P-canaliculata_contig1006.129.1 vs. uniprot
Match: M2M543_BAUPA (Uncharacterized protein n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2M543_BAUPA)

HSP 1 Score: 92.4 bits (228), Expect = 6.670e-19
Identity = 46/125 (36.80%), Postives = 72/125 (57.60%), Query Frame = 1
Query:    1 PNGQTLTTDEPCDPEANASACCPSSAFCLSGGMCIEAGTVSRGSCTDANWDSSACASFCREESPDQNVPMILCAG---NDTFSCGLSGQ-CNVN-----LPSDVQVVLRQTQIQSLLDTLADSAS 348
            P+GQT++ D PC      SACCP+++ CL  G+C   G VSR SCTDA W+SSAC  +C+ ESP  ++ +  C+    ++TF+CG +   C  N     +     + LR TQ+ +++ +   + S
Sbjct:   29 PDGQTISDDIPCGSNGTVSACCPANSLCLDNGLCYAGGIVSRSSCTDATWESSACPRYCKPESPTGSIAISPCSSASESNTFACGANSTGCQTNGDTFTMSGGNALQLRPTQLAAIISSALPTTS 153          
BLAST of mRNA_P-canaliculata_contig1006.129.1 vs. uniprot
Match: A0A8H6RR89_9PEZI (Uncharacterized protein n=1 Tax=Pseudocercospora fuligena TaxID=685502 RepID=A0A8H6RR89_9PEZI)

HSP 1 Score: 84.0 bits (206), Expect = 4.380e-16
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 PNGQTLTTDEPCDPEANASACCPSSAFCLSGGMCIEAGTVSRGSCTDANWDSSACASFCREESPDQNVPMILCAGNDTFSCGLSGQCNVNLPSDV-------QVVLRQTQIQSLLD 327
            P+G +   D PC+  A  SACC S  FCL+ G+C++ G +SRGSCTD  W   +CA +C+ ++P     ++ C+ N TF+CG     N  +PS          ++LR +Q+ S+++
Sbjct:   30 PDG-SAAPDVPCNSSAPVSACCTSFGFCLTNGLCLDRGVLSRGSCTDKEWKDDSCAQYCKNDNPSGGFGLMSCS-NSTFTCGFFPD-NCRVPSSTFSIDNADGLILRSSQLTSMME 142          
BLAST of mRNA_P-canaliculata_contig1006.129.1 vs. uniprot
Match: A0A6G1LJ06_9PEZI (Uncharacterized protein n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1LJ06_9PEZI)

HSP 1 Score: 77.4 bits (189), Expect = 1.410e-13
Identity = 55/182 (30.22%), Postives = 81/182 (44.51%), Query Frame = 1
Query:    1 PNGQTLTTDEPCDPEANASACCPSSAFCLSGGMCIEAGTVSRGSCTDANWDSSACASFCREESPDQNVPMILCAG--NDTFSCGLSGQCNVN-------LPSDVQVVLRQTQIQSLLDTLADSASF-----YTFTQVVGXXXXXXXXXXXXXXXXXXXLYRAKKSTTKSKFLYEIPDMPDDD 504
            P+G+T+ ++      +  SACC S+AF          G VSRGSCTD +W S+ACAS C  +    +V +  C    N TF CGL+     N         S   +VLR +Q+++LL ++  S S      YT + + G                   L++ K      K +Y +PD   DD
Sbjct:   30 PDGETIASNHTACNSSGTSACCSSNAFXXXXXXXFGDGVVSRGSCTDKSWSSTACASACLSQDASTDVAISPCTSGENATFVCGLNATDCSNEAVTFTMTGSSSGLVLRASQVEALLSSMVSSNSTHTTKTYTTSDMAGLGCGLGLPLFFALCFAIFLLHQEKVKHAPPKLMYPLPDDCKDD 211          
BLAST of mRNA_P-canaliculata_contig1006.129.1 vs. uniprot
Match: A0A6A6CRJ9_9PEZI (Uncharacterized protein n=1 Tax=Zasmidium cellare ATCC 36951 TaxID=1080233 RepID=A0A6A6CRJ9_9PEZI)

HSP 1 Score: 72.0 bits (175), Expect = 1.050e-11
Identity = 37/109 (33.94%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   19 TTDEPCDPEANASACCPSSAFCLSGGMCIEAGTVSRGSCTDANWDSSACASFCREESPDQNVPMILCAGNDTFSCGLS-GQCNVN-----LPSDVQVVLRQTQIQSLLD 327
            +TD PC+  A  SACC S+++ LS G+C+ +G +SRGSCTD +WD+  C  +C   +      ++ C  N TF+C  +  +C+V      +     +VL+  Q+ S ++
Sbjct:   29 STDVPCNSSATHSACCASTSYRLSNGVCLSSGILSRGSCTDQSWDADGCGQYCTNYNTGGGYAIMACT-NTTFTCRFNPDKCSVTSSVFTMKDMDTIVLKSDQLTSAME 136          
BLAST of mRNA_P-canaliculata_contig1006.129.1 vs. uniprot
Match: A0A428S841_9HYPO (Uncharacterized protein n=6 Tax=Fusarium solani species complex TaxID=232080 RepID=A0A428S841_9HYPO)

HSP 1 Score: 70.5 bits (171), Expect = 3.980e-11
Identity = 38/95 (40.00%), Postives = 52/95 (54.74%), Query Frame = 1
Query:    1 PNGQTLTTDEPCDPEANASACCPSSAFCLSGGMC----IEA-GTVSRGSCTDANWDSSACASFCREESPDQNVPMILCAG-NDTFSCGLSGQCNV 267
            P+G+  TTD+PC P+A  SACC     C+S GMC    +E  G  +RGSCT+ +W SS+C ++C +        +  C G  D F C  S   NV
Sbjct:   24 PDGKDATTDKPCQPDAEVSACCADGYVCMSTGMCQFVDLEGTGRFARGSCTNQDWSSSSCPNYCIDGDEAGGADVTRCQGYTDRFFCPKSQTANV 118          
BLAST of mRNA_P-canaliculata_contig1006.129.1 vs. uniprot
Match: A0A2D3USZ5_9PEZI (Uncharacterized protein n=1 Tax=Ramularia collo-cygni TaxID=112498 RepID=A0A2D3USZ5_9PEZI)

HSP 1 Score: 70.1 bits (170), Expect = 7.340e-11
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = 1
Query:   34 CDPEANASACCPSSAFCLSGGMCIEAGTVSRGSCTDANWDSSACASFCREESPDQNVPMILCAGN---DTFSCGL-SGQCNVNLP----SDVQVVLRQTQIQSLLDTLADSASFYTFTQ 366
            C    + ++CC +S  CL  G+C  AG +SRGSCTD +W+S  C+  C E S + ++P+I C        F CG+ S  C         S   + LR +++++ +     SA   T TQ
Sbjct:   39 CSSSGSEASCCDASQICLDNGLCFGAGIMSRGSCTDKDWNSKECSQHCGEVSRNSSIPVIACTNGGQESKFMCGMNSTNCRRTSTLFTLSTGAIXLRPSELEAXVKPAVSSALAQTTTQ 157          
BLAST of mRNA_P-canaliculata_contig1006.129.1 vs. uniprot
Match: A0A428R771_9HYPO (Uncharacterized protein n=1 Tax=Fusarium sp. AF-8 TaxID=1325734 RepID=A0A428R771_9HYPO)

HSP 1 Score: 69.7 bits (169), Expect = 7.630e-11
Identity = 44/130 (33.85%), Postives = 63/130 (48.46%), Query Frame = 1
Query:    1 PNGQTLTTDEPCDPEANASACCPSSAFCLSGGMC-----IEAGTVSRGSCTDANWDSSACASFCREESPDQN--VPMILCAG-NDTFSCGLSGQCNVNLPSDVQVVLRQTQIQSLLDTLADSASFYTFTQ 366
            PNGQ    D PC P+A ASACC     C+S GMC        G  +RGSCT+ +W SS C ++C +   ++     +  C G  D F C  S   N N+  D    L  +   S++ T+  +++    TQ
Sbjct:   24 PNGQDAPRDTPCQPDAEASACCAEGYICMSTGMCQFVQDTGTGKFARGSCTNQDWSSSLCPNYCTDADGEEKGGTDVTRCQGYTDRFFCPKSQ--NANVCKDESKALIFSSEPSVIKTILAASNTVQSTQ 151          
BLAST of mRNA_P-canaliculata_contig1006.129.1 vs. uniprot
Match: UPI001D769ABB (uncharacterized protein n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001D769ABB)

HSP 1 Score: 68.9 bits (167), Expect = 1.490e-10
Identity = 40/115 (34.78%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    1 PNGQTLTTDEPCDPEANASACCPSSAFCLSGGMCIEAGTVSRGSCTDANWDSSACASFCREESPDQNVPMILCAGNDTFSCGLSGQ-CNVN-----LPSDVQVVLRQTQIQSLLD 327
            P+G T   D PC+  A ASACC S               +SRGSCTD NWD  ACA +C+ ++P     ++ C+ N+ F+CG   + C VN     + +   ++LR +Q+ S ++
Sbjct:   30 PDG-TAAIDVPCNSSAPASACCTSYGXXXXXXXXXXXXILSRGSCTDKNWDDPACAQYCKNDNPSGGQYLMACS-NEKFTCGFFPENCGVNSSLFAISNAGSLILRSSQLTSAME 142          
BLAST of mRNA_P-canaliculata_contig1006.129.1 vs. uniprot
Match: A0A8E2F2X8_9PEZI (Uncharacterized protein n=1 Tax=Glonium stellatum TaxID=574774 RepID=A0A8E2F2X8_9PEZI)

HSP 1 Score: 65.9 bits (159), Expect = 2.030e-9
Identity = 44/127 (34.65%), Postives = 55/127 (43.31%), Query Frame = 1
Query:    1 PNGQTLTTDEPCDPEANASACCPSSAFCLSGGMCIE------AGTVSRGSCTDANWDSSACASFCREESPDQNVPMILCAGNDTFSCGLSGQCNVNLPSDVQVVLRQTQIQSLLDTLADSASFYTFT 363
            P+G     D PC+P A  SACC S   CLS G+C+            RG+CTD NW+SSAC  FC   + D         G   FSC        N  SD        +  S  +T++ S   YT T
Sbjct:   25 PDGTVSGLDVPCNPSALVSACCYSDQACLSNGLCVSDPLNDTLKAYHRGTCTDQNWESSACPLFCELPAND---------GTPVFSC--------NTTSDEYCCYDNCKCNSAYETMSFSGQPYTLT 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig1006.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6PSK7_9PEZI3.050e-2344.44Uncharacterized protein n=1 Tax=Neohortaea acidoph... [more]
M2M543_BAUPA6.670e-1936.80Uncharacterized protein n=1 Tax=Baudoinia panameri... [more]
A0A8H6RR89_9PEZI4.380e-1636.21Uncharacterized protein n=1 Tax=Pseudocercospora f... [more]
A0A6G1LJ06_9PEZI1.410e-1330.22Uncharacterized protein n=1 Tax=Teratosphaeria nub... [more]
A0A6A6CRJ9_9PEZI1.050e-1133.94Uncharacterized protein n=1 Tax=Zasmidium cellare ... [more]
A0A428S841_9HYPO3.980e-1140.00Uncharacterized protein n=6 Tax=Fusarium solani sp... [more]
A0A2D3USZ5_9PEZI7.340e-1132.77Uncharacterized protein n=1 Tax=Ramularia collo-cy... [more]
A0A428R771_9HYPO7.630e-1133.85Uncharacterized protein n=1 Tax=Fusarium sp. AF-8 ... [more]
UPI001D769ABB1.490e-1034.78uncharacterized protein n=1 Tax=Passalora fulva Ta... [more]
A0A8E2F2X8_9PEZI2.030e-934.65Uncharacterized protein n=1 Tax=Glonium stellatum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig1006contigP-canaliculata_contig1006:9696..10368 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score94.7
Seed ortholog evalue5e-17
Seed eggNOG ortholog430998.XP_007680904.1
EggNOG free text desc.btb poz domain protein
EggNOG OGs202TJ@147541,2EKHE@1,2SQDU@2759,3A565@33154,3MPM4@451867,3P7DP@4751,3QZ2I@4890
COG Functional cat.S
Best tax levelDothideomycetidae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size589
Cds size588
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig1006.129.1prot_P-canaliculata_contig1006.129.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig1006 9696..10368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.7946172-CDS-P-canaliculata_contig1006:9695..99441622815579.7946172-CDS-P-canaliculata_contig1006:9695..9944Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1006 9696..9944 -
1693494148.4461465-CDS-P-canaliculata_contig1006:9695..99441693494148.4461465-CDS-P-canaliculata_contig1006:9695..9944Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1006 9696..9944 -
1622815579.8101535-CDS-P-canaliculata_contig1006:9956..101111622815579.8101535-CDS-P-canaliculata_contig1006:9956..10111Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1006 9957..10111 -
1693494148.4572704-CDS-P-canaliculata_contig1006:9956..101111693494148.4572704-CDS-P-canaliculata_contig1006:9956..10111Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1006 9957..10111 -
1622815579.8215706-CDS-P-canaliculata_contig1006:10184..103681622815579.8215706-CDS-P-canaliculata_contig1006:10184..10368Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1006 10185..10368 -
1693494148.4655206-CDS-P-canaliculata_contig1006:10184..103681693494148.4655206-CDS-P-canaliculata_contig1006:10184..10368Pelvetia canaliculata dioeciousCDSP-canaliculata_contig1006 10185..10368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig1006.129.1

>prot_P-canaliculata_contig1006.129.1 ID=prot_P-canaliculata_contig1006.129.1|Name=mRNA_P-canaliculata_contig1006.129.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=196bp
PNGQTLTTDEPCDPEANASACCPSSAFCLSGGMCIEAGTVSRGSCTDANW
DSSACASFCREESPDQNVPMILCAGNDTFSCGLSGQCNVNLPSDVQVVLR
QTQIQSLLDTLADSASFYTFTQVVGVGVGVSLPLILALMIALVLLYRAKK
STTKSKFLYEIPDMPDDDETDNSSRSRAPVPPSKKPAPSRFQPPHP
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mRNA from alignment at P-canaliculata_contig1006:9696..10368-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig1006.129.1 ID=mRNA_P-canaliculata_contig1006.129.1|Name=mRNA_P-canaliculata_contig1006.129.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=673bp|location=Sequence derived from alignment at P-canaliculata_contig1006:9696..10368- (Pelvetia canaliculata dioecious)
CCCAACGGCCAGACCCTCACAACCGATGAGCCGTGCGATCCCGAGGCCAA CGCCTCGGCATGCTGTCCCAGCAGTGCTTTTTGCCTGTCAGGCGGCATGT GCATCGAAGCCGGCACGGTCAGTCGAGGTAGCTGCACCGACGCCAATTGG GACAGCTCTGCCTGCGCTTCCTTCTGTCGAGAAGGTAAGACGAGCCGACA GAGACCTTCTCCGTCGGTGCGGTGCGTTGCAGAGAGGCTGACTTGTTCCG CGGAAAGAATCTCCCGATCAAAACGTCCCGATGATTCTCTGCGCCGGCAA TGACACCTTCTCGTGCGGGCTCTCCGGCCAATGTAATGTCAACCTTCCGA GTGATGTCCAGGTCGTCCTACGCCAGACCCAAATCCAGAGCCTCTTGGAT ACTCTGGCGGATCCCGACTCTTCGTCCGCCTCTTTCTACACCTTCACCCA GGTCGTCGGCGTCGGCGTCGGCGTCAGTCTCCCGCTCATCCTCGCCTTGA TGATCGCCTTGGTCCTGCTCTACCGGGCAAAGAAGTCCACCACCAAGTCC AAGTTCCTGTATGAAATCCCCGACATGCCCGACGACGACGAAACCGACAA TAGCTCCCGCTCGCGCGCCCCCGTGCCGCCCTCCAAAAAGCCCGCCCCTT CCCGCTTCCAGCCTCCTCACCCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig1006:9696..10368-

>mRNA_P-canaliculata_contig1006.129.1 ID=mRNA_P-canaliculata_contig1006.129.1|Name=mRNA_P-canaliculata_contig1006.129.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at P-canaliculata_contig1006:9696..10368- (Pelvetia canaliculata dioecious)
CCCAACGGCCAGACCCTCACAACCGATGAGCCGTGCGATCCCGAGGCCAA
CGCCTCGGCATGCTGTCCCAGCAGTGCTTTTTGCCTGTCAGGCGGCATGT
GCATCGAAGCCGGCACGGTCAGTCGAGGTAGCTGCACCGACGCCAATTGG
GACAGCTCTGCCTGCGCTTCCTTCTGTCGAGAAGCCCAACGGCCAGACCC
TCACAACCGATGAGCCGTGCGATCCCGAGGCCAACGCCTCGGCATGCTGT
CCCAGCAGTGCTTTTTGCCTGTCAGGCGGCATGTGCATCGAAGCCGGCAC
GGTCAGTCGAGGTAGCTGCACCGACGCCAATTGGGACAGCTCTGCCTGCG
CTTCCTTCTGTCGAGAAGAATCTCCCGATCAAAACGTCCCGATGATTCTC
TGCGCCGGCAATGACACCTTCTCGTGCGGGCTCTCCGGCCAATGTAATGT
CAACCTTCCGAGTGATGTCCAGGTCGTCCTACGCCAGACCCAAATCCAGA
GCCTCTTGGATACTCTGGCGGATAATCTCCCGATCAAAACGTCCCGATGA
TTCTCTGCGCCGGCAATGACACCTTCTCGTGCGGGCTCTCCGGCCAATGT
AATGTCAACCTTCCGAGTGATGTCCAGGTCGTCCTACGCCAGACCCAAAT
CCAGAGCCTCTTGGATACTCTGGCGGATTCCGCCTCTTTCTACACCTTCA
CCCAGGTCGTCGGCGTCGGCGTCGGCGTCAGTCTCCCGCTCATCCTCGCC
TTGATGATCGCCTTGGTCCTGCTCTACCGGGCAAAGAAGTCCACCACCAA
GTCCAAGTTCCTGTATGAAATCCCCGACATGCCCGACGACGACGAAACCG
ACAATAGCTCCCGCTCGCGCGCCCCCGTGCCGCCCTCCAAAAAGCCCGCC
CCTTCCCGCTTCCAGCCTCCTCACCCCTCCGCCTCTTTCTACACCTTCAC
CCAGGTCGTCGGCGTCGGCGTCGGCGTCAGTCTCCCGCTCATCCTCGCCT
TGATGATCGCCTTGGTCCTGCTCTACCGGGCAAAGAAGTCCACCACCAAG
TCCAAGTTCCTGTATGAAATCCCCGACATGCCCGACGACGACGAAACCGA
CAATAGCTCCCGCTCGCGCGCCCCCGTGCCGCCCTCCAAAAAGCCCGCCC
CTTCCCGCTTCCAGCCTCCTCACCCC
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