mRNA_P-canaliculata_contig100598.124.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100598.124.1
Unique NamemRNA_P-canaliculata_contig100598.124.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig100598.124.1 vs. uniprot
Match: A0A7W6EIH7_9HYPH (Uncharacterized protein n=1 Tax=Pseudochelatococcus contaminans TaxID=1538103 RepID=A0A7W6EIH7_9HYPH)

HSP 1 Score: 55.5 bits (132), Expect = 4.070e-5
Identity = 59/251 (23.51%), Postives = 106/251 (42.23%), Query Frame = 1 
Query:   67 LVERVPAGREVVEKLLSSDTDPYVSAVLNQESIVGSMFGKDQFEDGSFSKATLITDSEKFELKEDGCAELMALSESVWRAGSTSSLIQKKFIDRAFFDWV--ALKPRDCKVEFVEFLDIEVEAAVQECKVLIPLHRVRSTVRFRI-------LGCLVRE---VNGGDVEQWFPSEKDAEYAVKMRRSLQGFCCVEVELSAEPSYAAEEALRIANIIASMIAMHSLTGVILGARYNGVPLGREITPTSTAIV 783
            LV ++ A R       S  +  + +A +  + +V +     Q  DG    A + TD+  + L ED  + +  L++ V      +  + + FI + F  W   A    D +  + + L       V+ C+VL P+  +     F++       LG  + E     GG+      ++ DA   ++M R   G   + +EL AEP +A E+AL IA    +++ +     ++         +G EI P+S  IV
Sbjct:  275 LVSKIRALRFAARPSPSFPSQRHAAATITPDDLVDTPVFTGQDADGMRVVAFIHTDTTPYGLAEDDFSGVATLADLVRETPWAAQSLGQSFIQQTFIIWARSAFSGSDAE-SYSDALSAAARNTVRTCRVLAPVAYLEVQSAFQLGPVAIEPLGIQLIEDFRSRGGEPSPEQAADVDA-LLLQMERDFVGHAAIAIELIAEPHFAQEKALLIAQDCVALLRVFCPESIVAALLCPMALMGAEIMPSSKLIV 523
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BLAST of mRNA_P-canaliculata_contig100598.124.1 vs. uniprot
Match: A0A119UPA4_9BURK (Uncharacterized protein n=3 Tax=Burkholderia ubonensis TaxID=101571 RepID=A0A119UPA4_9BURK)

HSP 1 Score: 55.1 bits (131), Expect = 5.370e-5
Identity = 48/193 (24.87%), Postives = 83/193 (43.01%), Query Frame = 1 
Query:  232 DSEKFELKEDGCAELMALSESVWRAGSTSSLIQKKFIDRAFFDWVALKPRDCKVEFVEFLDIEVEAAVQECKVLIPLHRVR-------STVRFRILGCLVREVNGGDVEQWFPSEKD--AEYAVKMRRSLQGFCCVEVELSAEPSYAAEEALRIANIIASMIAMHSLTGVILGARYNGVPL-GREITPTSTAI 780
            + + + L E+    L +L+++V +A    + + +KF++ AFFDW   +    ++ F E L       V   +V  P+  +          VR   +   V E          P ++    ++  K+R  +QG+    V + AEP++A E ALRIA     ++   S         ++ V L G E  PTS  I
Sbjct:  292 EGKSYGLVENDYKSLDSLTDAVLKAAWARTSLSRKFVETAFFDWARQQFPAAQLSFPEALSDAARDTVTNVEVWAPIANMEVEQGFDFGPVRIESMTAAVMENLRSRAPSPRPEQQQEVGQFFEKLRGEIQGYAAAVVSIEAEPAFAVERALRIAQDAVGLLTFFS-PAAPRSYLFSPVALAGAEYIPTSKLI 483
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100598.124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7W6EIH7_9HYPH4.070e-523.51Uncharacterized protein n=1 Tax=Pseudochelatococcu... [more]
A0A119UPA4_9BURK5.370e-524.87Uncharacterized protein n=3 Tax=Burkholderia ubone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100598contigP-canaliculata_contig100598:21..806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size786
Cds size786
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.432656-CDS-P-canaliculata_contig100598:20..8061622815579.432656-CDS-P-canaliculata_contig100598:20..806Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100598 21..806 -
1693494148.2949722-CDS-P-canaliculata_contig100598:20..8061693494148.2949722-CDS-P-canaliculata_contig100598:20..806Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100598 21..806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100598.124.1prot_P-canaliculata_contig100598.124.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100598 21..806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100598.124.1

>prot_P-canaliculata_contig100598.124.1 ID=prot_P-canaliculata_contig100598.124.1|Name=mRNA_P-canaliculata_contig100598.124.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=262bp
MSLDLHQNAVAAFNTRANHIASLVERVPAGREVVEKLLSSDTDPYVSAVL
NQESIVGSMFGKDQFEDGSFSKATLITDSEKFELKEDGCAELMALSESVW
RAGSTSSLIQKKFIDRAFFDWVALKPRDCKVEFVEFLDIEVEAAVQECKV
LIPLHRVRSTVRFRILGCLVREVNGGDVEQWFPSEKDAEYAVKMRRSLQG
FCCVEVELSAEPSYAAEEALRIANIIASMIAMHSLTGVILGARYNGVPLG
REITPTSTAIVF
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mRNA from alignment at P-canaliculata_contig100598:21..806-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100598.124.1 ID=mRNA_P-canaliculata_contig100598.124.1|Name=mRNA_P-canaliculata_contig100598.124.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=786bp|location=Sequence derived from alignment at P-canaliculata_contig100598:21..806- (Pelvetia canaliculata dioecious)
ATGAGCCTAGATCTCCATCAAAACGCGGTGGCTGCTTTCAATACAAGAGC
CAATCACATAGCGAGTCTGGTTGAGCGTGTTCCTGCAGGCAGAGAAGTCG
TAGAAAAACTGCTGTCGTCCGATACGGATCCATACGTATCCGCAGTTCTT
AATCAAGAGAGCATCGTAGGGTCGATGTTCGGGAAGGATCAATTCGAGGA
CGGTTCATTCAGCAAGGCTACGCTAATCACAGACAGCGAGAAATTTGAGT
TAAAAGAAGATGGCTGCGCCGAGCTGATGGCGTTGTCCGAATCTGTTTGG
AGGGCAGGATCAACGTCGAGTTTGATTCAAAAAAAGTTTATTGATCGCGC
GTTTTTCGATTGGGTCGCGCTGAAGCCAAGAGACTGCAAGGTTGAGTTTG
TAGAATTTTTAGACATAGAAGTAGAGGCAGCTGTTCAAGAATGTAAAGTG
CTGATCCCTCTTCACCGAGTTCGAAGCACCGTTCGTTTTAGAATACTTGG
ATGTTTAGTGCGTGAAGTTAATGGCGGTGACGTTGAGCAATGGTTTCCCT
CAGAGAAGGACGCAGAGTACGCGGTAAAGATGCGTCGGTCACTACAGGGA
TTCTGCTGCGTTGAGGTCGAACTAAGTGCCGAGCCGAGCTATGCAGCGGA
GGAGGCCCTTCGGATCGCAAACATCATAGCTTCGATGATTGCGATGCATT
CACTGACTGGAGTAATTCTTGGGGCTCGATACAACGGCGTTCCCTTAGGT
CGAGAAATAACTCCAACATCCACAGCTATCGTGTTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig100598:21..806-

>mRNA_P-canaliculata_contig100598.124.1 ID=mRNA_P-canaliculata_contig100598.124.1|Name=mRNA_P-canaliculata_contig100598.124.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at P-canaliculata_contig100598:21..806- (Pelvetia canaliculata dioecious)
ATGAGCCTAGATCTCCATCAAAACGCGGTGGCTGCTTTCAATACAAGAGC
CAATCACATAGCGAGTCTGGTTGAGCGTGTTCCTGCAGGCAGAGAAGTCG
TAGAAAAACTGCTGTCGTCCGATACGGATCCATACGTATCCGCAGTTCTT
AATCAAGAGAGCATCGTAGGGTCGATGTTCGGGAAGGATCAATTCGAGGA
CGGTTCATTCAGCAAGGCTACGCTAATCACAGACAGCGAGAAATTTGAGT
TAAAAGAAGATGGCTGCGCCGAGCTGATGGCGTTGTCCGAATCTGTTTGG
AGGGCAGGATCAACGTCGAGTTTGATTCAAAAAAAGTTTATTGATCGCGC
GTTTTTCGATTGGGTCGCGCTGAAGCCAAGAGACTGCAAGGTTGAGTTTG
TAGAATTTTTAGACATAGAAGTAGAGGCAGCTGTTCAAGAATGTAAAGTG
CTGATCCCTCTTCACCGAGTTCGAAGCACCGTTCGTTTTAGAATACTTGG
ATGTTTAGTGCGTGAAGTTAATGGCGGTGACGTTGAGCAATGGTTTCCCT
CAGAGAAGGACGCAGAGTACGCGGTAAAGATGCGTCGGTCACTACAGGGA
TTCTGCTGCGTTGAGGTCGAACTAAGTGCCGAGCCGAGCTATGCAGCGGA
GGAGGCCCTTCGGATCGCAAACATCATAGCTTCGATGATTGCGATGCATT
CACTGACTGGAGTAATTCTTGGGGCTCGATACAACGGCGTTCCCTTAGGT
CGAGAAATAACTCCAACATCCACAGCTATCGTGTTCATGAGCCTAGATCT
CCATCAAAACGCGGTGGCTGCTTTCAATACAAGAGCCAATCACATAGCGA
GTCTGGTTGAGCGTGTTCCTGCAGGCAGAGAAGTCGTAGAAAAACTGCTG
TCGTCCGATACGGATCCATACGTATCCGCAGTTCTTAATCAAGAGAGCAT
CGTAGGGTCGATGTTCGGGAAGGATCAATTCGAGGACGGTTCATTCAGCA
AGGCTACGCTAATCACAGACAGCGAGAAATTTGAGTTAAAAGAAGATGGC
TGCGCCGAGCTGATGGCGTTGTCCGAATCTGTTTGGAGGGCAGGATCAAC
GTCGAGTTTGATTCAAAAAAAGTTTATTGATCGCGCGTTTTTCGATTGGG
TCGCGCTGAAGCCAAGAGACTGCAAGGTTGAGTTTGTAGAATTTTTAGAC
ATAGAAGTAGAGGCAGCTGTTCAAGAATGTAAAGTGCTGATCCCTCTTCA
CCGAGTTCGAAGCACCGTTCGTTTTAGAATACTTGGATGTTTAGTGCGTG
AAGTTAATGGCGGTGACGTTGAGCAATGGTTTCCCTCAGAGAAGGACGCA
GAGTACGCGGTAAAGATGCGTCGGTCACTACAGGGATTCTGCTGCGTTGA
GGTCGAACTAAGTGCCGAGCCGAGCTATGCAGCGGAGGAGGCCCTTCGGA
TCGCAAACATCATAGCTTCGATGATTGCGATGCATTCACTGACTGGAGTA
ATTCTTGGGGCTCGATACAACGGCGTTCCCTTAGGTCGAGAAATAACTCC
AACATCCACAGCTATCGTGTTC
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