mRNA_P-canaliculata_contig10059.123.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10059.123.1
Unique NamemRNA_P-canaliculata_contig10059.123.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10059.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10059contigP-canaliculata_contig10059:3618..6187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2272
Cds size1779
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10059.123.1prot_P-canaliculata_contig10059.123.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10059 3691..5469 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.3535728-UTR-P-canaliculata_contig10059:3617..36901622815579.3535728-UTR-P-canaliculata_contig10059:3617..3690Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10059 3618..3690 +
1693494148.2512634-UTR-P-canaliculata_contig10059:3617..36901693494148.2512634-UTR-P-canaliculata_contig10059:3617..3690Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10059 3618..3690 +
1622815579.3754616-UTR-P-canaliculata_contig10059:5469..54731622815579.3754616-UTR-P-canaliculata_contig10059:5469..5473Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10059 5470..5473 +
1693494148.2788222-UTR-P-canaliculata_contig10059:5469..54731693494148.2788222-UTR-P-canaliculata_contig10059:5469..5473Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10059 5470..5473 +
1622815579.3856487-UTR-P-canaliculata_contig10059:5771..61871622815579.3856487-UTR-P-canaliculata_contig10059:5771..6187Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10059 5772..6187 +
1693494148.2869852-UTR-P-canaliculata_contig10059:5771..61871693494148.2869852-UTR-P-canaliculata_contig10059:5771..6187Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10059 5772..6187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.3652625-CDS-P-canaliculata_contig10059:3690..54691622815579.3652625-CDS-P-canaliculata_contig10059:3690..5469Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10059 3691..5469 +
1693494148.2703354-CDS-P-canaliculata_contig10059:3690..54691693494148.2703354-CDS-P-canaliculata_contig10059:3690..5469Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10059 3691..5469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10059.123.1

>prot_P-canaliculata_contig10059.123.1 ID=prot_P-canaliculata_contig10059.123.1|Name=mRNA_P-canaliculata_contig10059.123.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=593bp
MFGVIGTKTTEYCAQHAKDGMVDVKYRRTCRTEGCGKQPSFGVACTKTRE
YCAQHAPEGMVSTNNKICKIEGCGKRPSFGVAGTNTREYCAQHANEGMVD
VCSRRCRTKGCGKVSSFGVAGKKTREYCSQHAKEGMVDVRSRKCSTQGCG
KVSSFGGVGTKTREYCAQHAPDGMVNVFKIYCKIEGCRKRPSFGVAGTTK
RDYCAQHAMDGMINVNMRPCRTEGCRKQPSFGVAGTKTREYCAQHAPDGM
VIINKVMCKIEGCGKMPSFGVAGTKAREYCAQHAKEGMVNVGSSRCKTKG
CGKVSSFGLAGTKMREYCAQHAKNGMVTFENRTCRTEGCNKQPSFGVAGT
KTRAYCAQHAKEGMVRAKTRMCKTEACGKKSSFGVAGATTREYCTQHAKE
GMVEVCSKKCRTQGCGKVPFFGAAVTKMREYCALHAPDGMVNVCSRMFGN
KGGGKRSLGAENSQRHVENVVVKANSDEIVSGVYTRPICGVEGYRRREID
PHHYEEEAIGGANTQVVKRKTDGASPVQPSPPSGCRIGAYKRLRQGDIAS
TASRRGSAVESAAGAGTLPGIDEPKLPAKRYSSVKMEVQLSG*
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mRNA from alignment at P-canaliculata_contig10059:3618..6187+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10059.123.1 ID=mRNA_P-canaliculata_contig10059.123.1|Name=mRNA_P-canaliculata_contig10059.123.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2570bp|location=Sequence derived from alignment at P-canaliculata_contig10059:3618..6187+ (Pelvetia canaliculata dioecious)
GAAGCACGCGAACCACGGAATTGTTGACGCTTGCAACAGAAAATGCAGAA
CTGAAGGCTGCAGAAAAAAGCCAATGTTCGGGGTGATCGGCACAAAAACG
ACAGAATATTGCGCACAGCACGCGAAGGATGGAATGGTCGACGTGAAATA
TAGAAGAACCTGCAGAACCGAAGGCTGCGGCAAGCAACCGTCGTTCGGAG
TGGCTTGTACGAAAACGCGGGAGTACTGCGCACAGCACGCCCCGGAGGGA
ATGGTCAGCACCAACAACAAAATATGTAAAATCGAGGGCTGTGGAAAAAG
GCCATCGTTTGGAGTGGCCGGTACAAATACGCGGGAGTACTGCGCGCAGC
ACGCGAACGAGGGGATGGTCGACGTCTGCAGCAGAAGGTGCAGAACCAAG
GGCTGCGGAAAGGTGTCATCGTTCGGAGTGGCCGGTAAGAAAACACGAGA
GTACTGCTCACAGCACGCGAAGGAGGGGATGGTCGACGTCCGCAGCAGAA
AGTGCAGCACCCAGGGCTGCGGAAAGGTGTCATCGTTTGGAGGGGTCGGT
ACGAAAACGCGGGAGTACTGCGCACAGCACGCCCCGGACGGGATGGTGAA
CGTCTTCAAAATATATTGCAAAATTGAAGGCTGCAGGAAGAGGCCGTCGT
TCGGAGTGGCCGGGACGACAAAGCGGGACTATTGCGCACAGCACGCGATG
GATGGGATGATCAACGTGAACATGAGACCCTGCAGAACAGAAGGCTGCCG
CAAGCAGCCGTCGTTCGGTGTGGCCGGTACGAAAACGCGGGAGTACTGCG
CACAGCACGCCCCGGACGGGATGGTCATCATCAACAAAGTAATGTGTAAA
ATCGAGGGCTGCGGCAAAATGCCATCGTTCGGAGTGGCCGGTACGAAAGC
GCGGGAGTACTGCGCACAGCACGCGAAGGAGGGAATGGTCAACGTCGGCA
GCAGTAGGTGCAAAACCAAGGGCTGCGGCAAGGTGTCATCGTTCGGATTG
GCTGGTACGAAAATGCGAGAGTACTGCGCACAGCACGCGAAGAATGGGAT
GGTCACCTTCGAGAACAGAACCTGCAGAACCGAAGGCTGCAACAAGCAGC
CGTCGTTCGGAGTGGCCGGTACGAAAACGCGGGCGTACTGTGCACAGCAC
GCGAAGGAGGGGATGGTCCGCGCAAAAACCAGAATGTGTAAAACCGAAGC
CTGTGGCAAGAAGTCATCGTTCGGAGTGGCCGGTGCGACAACTCGGGAGT
ACTGCACACAGCACGCGAAGGAGGGGATGGTCGAAGTCTGCAGCAAAAAA
TGCAGAACCCAGGGCTGCGGCAAGGTGCCATTTTTCGGAGCAGCCGTTAC
GAAAATGCGAGAGTACTGCGCACTGCACGCCCCAGACGGAATGGTCAATG
TTTGCAGCAGAATGTTTGGGAACAAAGGCGGCGGGAAGAGGTCGCTCGGG
GCGGAGAATAGCCAACGGCACGTGGAGAACGTGGTAGTCAAAGCCAACAG
CGATGAAATCGTAAGTGGAGTCTATACCAGGCCAATATGTGGAGTCGAAG
GATACAGGAGGCGAGAGATCGACCCACACCACTACGAGGAGGAAGCCATT
GGTGGCGCAAATACGCAAGTCGTAAAACGTAAAACCGATGGTGCTTCTCC
CGTCCAGCCAAGCCCTCCTTCGGGCTGTAGGATAGGCGCTTACAAACGAT
TACGACAGGGAGACATTGCGTCTACAGCTTCGAGGCGAGGGAGCGCCGTA
GAATCGGCAGCGGGAGCGGGGACTTTGCCGGGTATCGACGAGCCAAAGTT
GCCCGCCAAGCGTTATTCTTCTGTGAAGATGGAGGTGCAGCTCTCCGGGT
AGTCAGGTACATCCCTCTGAGTCGCAAAAGGACACCCCTCTGGAGCGCAA
AACTCAATGCCTGGTATCACTGTTACTACTATTCTGGTCACCAGGGCTCC
TTCGAAGACTGCTACGTTTGGTCAGATGAAGTCGAATTTCATCTCGTTTT
CGTTTCCCGCATTGCGTTTCGTAGCGAGGCGACGAATCCAGCCCCGCCGT
TCCTCTTAGACCCCGACTATCTTGGAGTGCAACTATTACTGTATACGCTA
CTCGCCCTTACCGCCACGACCGTTTTCTGTCGTTCATCCGTCTTTCGAAC
TCAGGTGGTCAGTCAAGAGCATGATATCGATACTGTAGTCGCCGAGACGT
CGTTAGGTCTGGTGAGGGTCCTACCGTGCTTGCATCCGGAATAACTTACG
TTAGCTGCCCCTGTATAATTTCGCGTACAGACAGGAGAGCCTTTCTCTTC
GTATGTTTTGGAAGTGTTCCTTCTCTTGCCAGACGCACGTATACCGTTCC
ATCCTTGAATTGCCGGTACGGTGACACGGGACCTGAGGACGACGCCACGA
AGGGCTGTTGTGGGTAAAGGTCTGAACAGCCGTCATCACGATTCTCATCG
GGTGTCGGAGGGGGTATTTTAGGGGAAGCAAGTAGGGCGGTATCCGTTGG
ACACGTACTTCATGTCGGCCCCGCTGTATTGAGCGTTAGGTAACGCCTCG
GGGGGAAATATTTAACTGGC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10059:3618..6187+

>mRNA_P-canaliculata_contig10059.123.1 ID=mRNA_P-canaliculata_contig10059.123.1|Name=mRNA_P-canaliculata_contig10059.123.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=3558bp|location=Sequence derived from alignment at P-canaliculata_contig10059:3618..6187+ (Pelvetia canaliculata dioecious)
ATGTTCGGGGTGATCGGCACAAAAACGACAGAATATTGCGCACAGCACGC
GAAGGATGGAATGGTCGACGTGAAATATAGAAGAACCTGCAGAACCGAAG
GCTGCGGCAAGCAACCGTCGTTCGGAGTGGCTTGTACGAAAACGCGGGAG
TACTGCGCACAGCACGCCCCGGAGGGAATGGTCAGCACCAACAACAAAAT
ATGTAAAATCGAGGGCTGTGGAAAAAGGCCATCGTTTGGAGTGGCCGGTA
CAAATACGCGGGAGTACTGCGCGCAGCACGCGAACGAGGGGATGGTCGAC
GTCTGCAGCAGAAGGTGCAGAACCAAGGGCTGCGGAAAGGTGTCATCGTT
CGGAGTGGCCGGTAAGAAAACACGAGAGTACTGCTCACAGCACGCGAAGG
AGGGGATGGTCGACGTCCGCAGCAGAAAGTGCAGCACCCAGGGCTGCGGA
AAGGTGTCATCGTTTGGAGGGGTCGGTACGAAAACGCGGGAGTACTGCGC
ACAGCACGCCCCGGACGGGATGGTGAACGTCTTCAAAATATATTGCAAAA
TTGAAGGCTGCAGGAAGAGGCCGTCGTTCGGAGTGGCCGGGACGACAAAG
CGGGACTATTGCGCACAGCACGCGATGGATGGGATGATCAACGTGAACAT
GAGACCCTGCAGAACAGAAGGCTGCCGCAAGCAGCCGTCGTTCGGTGTGG
CCGGTACGAAAACGCGGGAGTACTGCGCACAGCACGCCCCGGACGGGATG
GTCATCATCAACAAAGTAATGTGTAAAATCGAGGGCTGCGGCAAAATGCC
ATCGTTCGGAGTGGCCGGTACGAAAGCGCGGGAGTACTGCGCACAGCACG
CGAAGGAGGGAATGGTCAACGTCGGCAGCAGTAGGTGCAAAACCAAGGGC
TGCGGCAAGGTGTCATCGTTCGGATTGGCTGGTACGAAAATGCGAGAGTA
CTGCGCACAGCACGCGAAGAATGGGATGGTCACCTTCGAGAACAGAACCT
GCAGAACCGAAGGCTGCAACAAGCAGCCGTCGTTCGGAGTGGCCGGTACG
AAAACGCGGGCGTACTGTGCACAGCACGCGAAGGAGGGGATGGTCCGCGC
AAAAACCAGAATGTGTAAAACCGAAGCCTGTGGCAAGAAGTCATCGTTCG
GAGTGGCCGGTGCGACAACTCGGGAGTACTGCACACAGCACGCGAAGGAG
GGGATGGTCGAAGTCTGCAGCAAAAAATGCAGAACCCAGGGCTGCGGCAA
GGTGCCATTTTTCGGAGCAGCCGTTACGAAAATGCGAGAGTACTGCGCAC
TGCACGCCCCAGACGGAATGGTCAATGTTTGCAGCAGAATGTTTGGGAAC
AAAGGCGGCGGGAAGAGGTCGCTCGGGGCGGAGAATAGCCAACGGCACGT
GGAGAACGTGGTAGTCAAAGCCAACAGCGATGAAATCGTAAGTGGAGTCT
ATACCAGGCCAATATGTGGAGTCGAAGGATACAGGAGGCGAGAGATCGAC
CCACACCACTACGAGGAGGAAGCCATTGGTGGCGCAAATACGCAAGTCGT
AAAACGTAAAACCGATGGTGCTTCTCCCGTCCAGCCAAGCCCTCCTTCGG
GCTGTAGGATAGGCGCTTACAAACGATTACGACAGGGAGACATTGCGTCT
ACAGCTTCGAGGCGAGGGAGCGCCGTAGAATCGGCAGCGGGAGCGGGGAC
TTTGCCGGGTATCGACGAGCCAAAGTTGCCCGCCAAGCGTTATTCTTCTG
TGAAGATGGAGGTGCAGCTCTCCGGGTAGATGTTCGGGGTGATCGGCACA
AAAACGACAGAATATTGCGCACAGCACGCGAAGGATGGAATGGTCGACGT
GAAATATAGAAGAACCTGCAGAACCGAAGGCTGCGGCAAGCAACCGTCGT
TCGGAGTGGCTTGTACGAAAACGCGGGAGTACTGCGCACAGCACGCCCCG
GAGGGAATGGTCAGCACCAACAACAAAATATGTAAAATCGAGGGCTGTGG
AAAAAGGCCATCGTTTGGAGTGGCCGGTACAAATACGCGGGAGTACTGCG
CGCAGCACGCGAACGAGGGGATGGTCGACGTCTGCAGCAGAAGGTGCAGA
ACCAAGGGCTGCGGAAAGGTGTCATCGTTCGGAGTGGCCGGTAAGAAAAC
ACGAGAGTACTGCTCACAGCACGCGAAGGAGGGGATGGTCGACGTCCGCA
GCAGAAAGTGCAGCACCCAGGGCTGCGGAAAGGTGTCATCGTTTGGAGGG
GTCGGTACGAAAACGCGGGAGTACTGCGCACAGCACGCCCCGGACGGGAT
GGTGAACGTCTTCAAAATATATTGCAAAATTGAAGGCTGCAGGAAGAGGC
CGTCGTTCGGAGTGGCCGGGACGACAAAGCGGGACTATTGCGCACAGCAC
GCGATGGATGGGATGATCAACGTGAACATGAGACCCTGCAGAACAGAAGG
CTGCCGCAAGCAGCCGTCGTTCGGTGTGGCCGGTACGAAAACGCGGGAGT
ACTGCGCACAGCACGCCCCGGACGGGATGGTCATCATCAACAAAGTAATG
TGTAAAATCGAGGGCTGCGGCAAAATGCCATCGTTCGGAGTGGCCGGTAC
GAAAGCGCGGGAGTACTGCGCACAGCACGCGAAGGAGGGAATGGTCAACG
TCGGCAGCAGTAGGTGCAAAACCAAGGGCTGCGGCAAGGTGTCATCGTTC
GGATTGGCTGGTACGAAAATGCGAGAGTACTGCGCACAGCACGCGAAGAA
TGGGATGGTCACCTTCGAGAACAGAACCTGCAGAACCGAAGGCTGCAACA
AGCAGCCGTCGTTCGGAGTGGCCGGTACGAAAACGCGGGCGTACTGTGCA
CAGCACGCGAAGGAGGGGATGGTCCGCGCAAAAACCAGAATGTGTAAAAC
CGAAGCCTGTGGCAAGAAGTCATCGTTCGGAGTGGCCGGTGCGACAACTC
GGGAGTACTGCACACAGCACGCGAAGGAGGGGATGGTCGAAGTCTGCAGC
AAAAAATGCAGAACCCAGGGCTGCGGCAAGGTGCCATTTTTCGGAGCAGC
CGTTACGAAAATGCGAGAGTACTGCGCACTGCACGCCCCAGACGGAATGG
TCAATGTTTGCAGCAGAATGTTTGGGAACAAAGGCGGCGGGAAGAGGTCG
CTCGGGGCGGAGAATAGCCAACGGCACGTGGAGAACGTGGTAGTCAAAGC
CAACAGCGATGAAATCGTAAGTGGAGTCTATACCAGGCCAATATGTGGAG
TCGAAGGATACAGGAGGCGAGAGATCGACCCACACCACTACGAGGAGGAA
GCCATTGGTGGCGCAAATACGCAAGTCGTAAAACGTAAAACCGATGGTGC
TTCTCCCGTCCAGCCAAGCCCTCCTTCGGGCTGTAGGATAGGCGCTTACA
AACGATTACGACAGGGAGACATTGCGTCTACAGCTTCGAGGCGAGGGAGC
GCCGTAGAATCGGCAGCGGGAGCGGGGACTTTGCCGGGTATCGACGAGCC
AAAGTTGCCCGCCAAGCGTTATTCTTCTGTGAAGATGGAGGTGCAGCTCT
CCGGGTAG
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