mRNA_P-canaliculata_contig100532.116.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100532.116.1
Unique NamemRNA_P-canaliculata_contig100532.116.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI0003F97F06 (methyl-accepting chemotaxis protein n=1 Tax=Psychromonas sp. SP041 TaxID=1365007 RepID=UPI0003F97F06)

HSP 1 Score: 381 bits (979), Expect = 5.950e-129
Identity = 216/307 (70.36%), Postives = 251/307 (81.76%), Query Frame = 1
Query:    1 MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSNLIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921
            M+QL + PIQ IIH+VGF+ M+  Y  V+++II T +    F   I  H LS EL  LLY+S+AL++I N E+  F Q++ SLNA+TFDYRELK + L+ A  LEQL SSYRELGRVNDKNKDKLSEVSYSAIQVI+TAHSV ENVQKQS+ATNA AAAITEMS S +EV  RI  VH++SE+AFNTAE+GR SIA LK  L+KVAFEA+ T  DIE LMTLA+ VA+ISESIQGIADQTNLLALNASIEAARAGE+GRGFAVVADEVR LSHRSH AAD+IVKNV+ VINQG+KI +SMSNVVEQS
Sbjct:    1 MHQLFSLPIQKIIHFVGFKAMLSFYLCVLLTIIATQMTIVNFPEKISTHALSIELAILLYLSVALVMIINTELQSFKQIICSLNADTFDYRELKISNLLPASLLEQLTSSYRELGRVNDKNKDKLSEVSYSAIQVINTAHSVTENVQKQSDATNATAAAITEMSVSLNEVNTRISGVHHSSEHAFNTAEQGRISIAELKISLEKVAFEADTTTNDIELLMTLAHSVAEISESIQGIADQTNLLALNASIEAARAGEFGRGFAVVADEVRALSHRSHKAADSIVKNVSSVINQGNKISHSMSNVVEQS 307          
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI001357BB7C (methyl-accepting chemotaxis protein n=1 Tax=Psychromonas sp. L1A2 TaxID=2686356 RepID=UPI001357BB7C)

HSP 1 Score: 370 bits (949), Expect = 2.110e-124
Identity = 208/307 (67.75%), Postives = 246/307 (80.13%), Query Frame = 1
Query:    1 MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSNLIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921
            M QL + P+Q +I +VGF+ ++  Y  ++++I+ T      F   +P H+LS EL  L Y S+AL+++ N E++ F +MLSSLNA+TFDYR+LK N L+  + LEQL SSYRELGRVNDKNKDKLSEVSYSAIQVI+TAHSV ENVQKQS+ATNA AAAITEMS S +EV  RI  VH++SE AFNTAE+GR SIA L+  L+KVAFEA  TA DIE LMTLAN VA+ISESIQGIADQTNLLALNASIEAARAGE+G GFAVVADEVR LSHRS+ AAD+IVKNV  VINQG+KI  SMSNVVEQS
Sbjct:    1 MRQLFSLPVQKVIQFVGFKVVVSFYICMLLTILATQFSVVNFPGKVPTHLLSIELAVLFYFSVALIMVINDELHSFKRMLSSLNADTFDYRDLKTNNLLPENLLEQLTSSYRELGRVNDKNKDKLSEVSYSAIQVINTAHSVTENVQKQSDATNATAAAITEMSVSLNEVNTRISGVHSSSENAFNTAEQGRLSIAELQASLEKVAFEAGTTANDIELLMTLANTVAEISESIQGIADQTNLLALNASIEAARAGEFGLGFAVVADEVRALSHRSYTAADSIVKNVRSVINQGNKISLSMSNVVEQS 307          
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: A0A4Y7ZGY2_9GAMM (Chemotaxis protein n=2 Tax=Psychromonas sp. RZ5 TaxID=2555642 RepID=A0A4Y7ZGY2_9GAMM)

HSP 1 Score: 359 bits (922), Expect = 4.880e-120
Identity = 200/307 (65.15%), Postives = 246/307 (80.13%), Query Frame = 1
Query:    1 MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSNLIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921
            M  +IA PIQ II+Y GFR M+ +Y  +I+ II T+ +  YF   +P   L  EL  LLY+S++L+++   E+ LFNQM +S+NA+TFDYR LK + L++A  L++LMSSYRELGRVNDKNKD+L+EV+YSAIQVIDTA +V  NV+KQS+ATN+ AAAI EMS S +EV  RI DVH++SE+A+ TAEKGR SIA LK+ LD VAFEA++T+ DIE LMTLAN VA+ISESIQGIA QTNLLALNASIEAARAGEYGRGFAVVADEVR L+ RSH AAD+IVKNV LVI+QG+KI  SM+ VV QS
Sbjct:   21 MNNIIAYPIQNIINYAGFRAMLSIYITLILLIIATYFVTLYFPGTLPSQALPIELFLLLYLSMSLIVVFKNELKLFNQMFTSVNADTFDYRHLKTSNLIAAAALDELMSSYRELGRVNDKNKDRLNEVAYSAIQVIDTARAVTVNVEKQSDATNSTAAAINEMSTSLTEVNSRIGDVHHSSEHAYVTAEKGRVSIAELKSSLDHVAFEAHETSSDIEQLMTLANAVAEISESIQGIAAQTNLLALNASIEAARAGEYGRGFAVVADEVRALATRSHTAADSIVKNVGLVIDQGNKISTSMAKVVTQS 327          
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: A0A7W4FHC9_9GAMM (Chemotaxis protein n=2 Tax=Psychromonas TaxID=67572 RepID=A0A7W4FHC9_9GAMM)

HSP 1 Score: 357 bits (915), Expect = 2.910e-119
Identity = 200/307 (65.15%), Postives = 243/307 (79.15%), Query Frame = 1
Query:    1 MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSNLIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921
            MYQL + P+Q IIH+ GF+ M+ +Y G++ +II T I++  F   I  HVLS EL  L Y+SIAL++  N E++ F QM   LNA++FDYR+L+ + L++AHF++QL++SYRELGRVNDK KD+L+EVSYSAIQVIDTAH+VAENVQKQSNATN+ AAAITEMS S SEV   I +VH +S++AF+TAEKGR SI  LK  L  V FEANQTA DI+ LMTLAN VA+IS+SIQGI DQTNLLALNASIEAARAGE GRGFAVVADEVR L+ RS  AAD+IVKNV+LV NQ  KI  SM+ VV QS
Sbjct:    1 MYQLFSIPVQKIIHFAGFKAMLSIYMGLLSAIIATQIVSVNFPEQISVHVLSIELAILFYLSIALVMAINNELHSFKQMFRLLNADSFDYRDLQTSHLITAHFIDQLLASYRELGRVNDKYKDRLNEVSYSAIQVIDTAHAVAENVQKQSNATNSTAAAITEMSASLSEVNGGIREVHLSSQHAFDTAEKGRASIVDLKLSLKSVVFEANQTAGDIDVLMTLANSVAEISQSIQGITDQTNLLALNASIEAARAGELGRGFAVVADEVRALALRSRIAADDIVKNVDLVKNQSHKISTSMAKVVTQS 307          
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI001C08554C (methyl-accepting chemotaxis protein n=1 Tax=Psychrosphaera sp. F3M07 TaxID=2841560 RepID=UPI001C08554C)

HSP 1 Score: 253 bits (645), Expect = 1.510e-78
Identity = 156/306 (50.98%), Postives = 209/306 (68.30%), Query Frame = 1
Query:   22 PIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSN------LIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921
            P + +I ++GF      Y   ++ ++        F+N      LIP +     LIT  Y+ ++L++I +KE++ F  +L + +AE+FDYR+L    L+    +EQ M+SYREL RVN+++ DKLSEV YSA QVID A +V+ NVQKQS+AT++ AAAI EMSHS  EV  RI DVH +S++A   A+ GR +I  LK+ LD V  EA +T +DI+ L  LA  V+  SESIQGIADQTNLLALNASIEAARAGE GRGFAVVA+EVR L+HR+  AAD+I  NVN V++Q  KI  +MSNVV+Q+
Sbjct:    8 PARQLIKFIGFNA----YISSLLLLVFAFFPISLFTNINIHQTLIPLY----ALITF-YLCLSLVLILSKELSNFKGLLINFDAESFDYRKLTIQTLLPVDAIEQFMNSYRELSRVNNQHHDKLSEVDYSASQVIDKAQAVSVNVQKQSDATSSTAAAINEMSHSLIEVNDRISDVHVSSKHANQAAQSGRNTILDLKSSLDVVLTEAKETQQDIQRLEQLATIVSSTSESIQGIADQTNLLALNASIEAARAGEMGRGFAVVAEEVRALAHRARDAADSIGNNVNTVLSQSKKIAQNMSNVVQQT 304          
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: A0A2D6RJ66_9GAMM (Chemotaxis protein n=1 Tax=Colwelliaceae bacterium TaxID=2026726 RepID=A0A2D6RJ66_9GAMM)

HSP 1 Score: 237 bits (605), Expect = 1.820e-72
Identity = 133/248 (53.63%), Postives = 181/248 (72.98%), Query Frame = 1
Query:  178 YISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921
            YI+    ++ ++++N F+Q + +++ + FD R +K   ++ +  + +L+++YRELGR+N +N+D+L EV YSA QVIDTAHSV ENV+KQS+AT + AAAI EMS S S+V  RI DVH +S+ A+ TA++G+E++ SL   LD V+ EA QT  DI+ L  LA  V   SESIQ IADQTNLLALNASIEAARAGE GRGFAVVA+EVR L+H S  +AD+IV NV  V+ Q + I  SMS VVE++
Sbjct:   59 YITTGTGVVLSQQLNKFSQTIHNIDTQHFDSRAVKFEPILPSTAISELLNTYRELGRINSENEDRLEEVKYSASQVIDTAHSVTENVKKQSDATTSTAAAIVEMSQSLSDVNARIKDVHISSQTAYQTAKQGQENLTSLNQNLDAVSKEAKQTQGDIDALKQLAIVVESTSESIQNIADQTNLLALNASIEAARAGEMGRGFAVVAEEVRALAHHSRESADSIVSNVKSVLLQSEAIALSMSKVVEKA 306          
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI00129E9252 (methyl-accepting chemotaxis protein n=2 Tax=unclassified Shewanella TaxID=196818 RepID=UPI00129E9252)

HSP 1 Score: 195 bits (495), Expect = 3.990e-56
Identity = 117/302 (38.74%), Postives = 190/302 (62.91%), Query Frame = 1
Query:   22 PIQTIIHYVGFRTMIGVYAGVIISIIITHILNGY--FSNLIPFHVLSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921
            P+  I++ +GF+           S I+T ++  +  F++ I  H++       LY+ I  + + N+++     ++S +N   FD+R++  +  + +   + L+ +YREL RVN  ++ +  EV YSA+QVI+T+  V +NVQ QS+ATNA AAAIT+MS S +EV   I + H +S +A   A +G+ ++ SL   +  V+ +A++T + + +L  L  +V  I+ESI  I+ QTNLLALNASIEAARAGE+GRGFAVVA+EVR L+ R+  + ++IV N+N V+ +  +I  +M+ VVEQ+
Sbjct:    7 PVNLIVNALGFKG----------SCILTILIYSFVVFTSTISHHIVFISHAIFLYLFIGFLYVINEQLEQIKAVVSDINTHQFDHRDIHFSNQIQSPLTDTLLKTYRELSRVNIHHQQRNQEVEYSAVQVIETSAKVKDNVQSQSDATNATAAAITQMSQSLAEVNNEISNTHKSSCHAAEIALQGQNALKSLHEAVADVSEKADKTQQRMVSLNKLVTNVESITESIAHISQQTNLLALNASIEAARAGEFGRGFAVVAEEVRALAERTQCSTEHIVTNINEVLKESGEIVITMAGVVEQA 298          
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: A0A2S7UYW8_9GAMM (Methyl-accepting transducer domain-containing protein n=2 Tax=Psychrosphaera saromensis TaxID=716813 RepID=A0A2S7UYW8_9GAMM)

HSP 1 Score: 183 bits (464), Expect = 1.060e-52
Identity = 110/200 (55.00%), Postives = 136/200 (68.00%), Query Frame = 1
Query:  322 MSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921
            M++YREL RVN+K+ +KL EV YSA QVI+ AH+V+ NVQKQS+AT + AAAI +MS SF EV  RI DVH +S+ A   A+ GR +I  L++ L+ V  E                     SESIQ IADQTNLLALNASIEAARAGE GRGFAVVA+EVR L+H S  AAD+I  N+N  + Q  KI  +M+NVVEQ+
Sbjct:    1 MNTYRELNRVNNKHHEKLHEVDYSASQVIEKAHAVSVNVQKQSDATTSTAAAINQMSQSFVEVNNRIADVHTSSKNANQDAKNGRSTITDLRSSLNIVLNEXXXXXXXXXXXXXXXXXXXTSSESIQAIADQTNLLALNASIEAARAGETGRGFAVVAEEVRALAHSSREAADSISSNINAALTQSHKIAENMANVVEQT 200          
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI001C099CD3 (methyl-accepting chemotaxis protein n=1 Tax=unclassified Psychrosphaera TaxID=2641570 RepID=UPI001C099CD3)

HSP 1 Score: 175 bits (443), Expect = 2.460e-48
Identity = 130/311 (41.80%), Postives = 190/311 (61.09%), Query Frame = 1
Query:    1 MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIIT-HILNGYFSNLIPFHVLSFELITLL--YISIALMIICNKEVNLFNQMLSSLNAETFDYRELKA----NRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVV 912
            M  +I  P+  ++  +G R    V A   +SI +T ++LN +  N++   ++   ++ LL  Y+    + +    +      L  ++ E FD R +K+    N  ++A F+E L    REL R N++N  +L EV+YSA QVI TA+SV+ENVQ+QS+AT + A+AI EM+HS  EV+ +I+ VH+A+  A +TA   ++ + +L   L  V  EA  T   +E L  +A  V + S +IQ IA QTNLLALNASIEAARAG++G GFAVVA+EVR L+ RSH AAD+IV+ V  V NQ  +I  SM+ VV
Sbjct:    1 MGNIIFYPVSLLLKSIGIRNCF-VLAITSLSIYLTLNMLNIF--NVLSIGIVQINILCLLSSYLLFGTLYVTYHYLKTSLSFLDEIDIEQFDPRNIKSLASQNHPLAAKFVEVL----RELSRSNEQNTARLREVAYSAQQVIGTANSVSENVQRQSDATTSTASAIIEMTHSLQEVSNKIELVHSAACGASSTASLAKKELINLTEKLHNVTIEAQDTQTRMEKLNVMATSVEKESHAIQKIAQQTNLLALNASIEAARAGQFGVGFAVVAEEVRELATRSHLAADSIVRAVLEVSNQTKQILDSMTTVV 304          
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Match: UPI001FFC80A9 (methyl-accepting chemotaxis protein n=2 Tax=Pseudoalteromonas sp. MMG010 TaxID=2822685 RepID=UPI001FFC80A9)

HSP 1 Score: 172 bits (437), Expect = 2.720e-48
Identity = 102/225 (45.33%), Postives = 147/225 (65.33%), Query Frame = 1
Query:  247 LNAETFDYRELKANRLVSAHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQSNATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKNILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIEAARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSMSNVVEQS 921
            +N + FD+RE+  + L+ +  L +L+ +YRELGRVN  +++   EV YSA QVID A  V  NV  QS+ATN+ A+AIT+MS S  +V   I   H++S  A N A +G+ ++  L   +++   +A  T   +  L TL   V +++++IQ I+ QTNLLALNASIEAARAGE+GRGFAVVA EVR L+ R+H A +NIV  ++ V+N+   I  +M  VV Q+
Sbjct:    3 INTDDFDHREIYFDLLLGSDVLNELLKTYRELGRVNKHHQENNKEVEYSANQVIDIATEVKNNVLLQSDATNSTASAITQMSQSLFDVNKEISLTHDSSLLASNKAHEGKAALVLLTQAINEANKQAQHTQNGMNVLNTLITDVEKMTDTIQQISQQTNLLALNASIEAARAGEHGRGFAVVAQEVRELAERTHNATENIVGTISQVLNKNTDIVTAMDIVVIQT 227          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100532.116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0003F97F065.950e-12970.36methyl-accepting chemotaxis protein n=1 Tax=Psychr... [more]
UPI001357BB7C2.110e-12467.75methyl-accepting chemotaxis protein n=1 Tax=Psychr... [more]
A0A4Y7ZGY2_9GAMM4.880e-12065.15Chemotaxis protein n=2 Tax=Psychromonas sp. RZ5 Ta... [more]
A0A7W4FHC9_9GAMM2.910e-11965.15Chemotaxis protein n=2 Tax=Psychromonas TaxID=6757... [more]
UPI001C08554C1.510e-7850.98methyl-accepting chemotaxis protein n=1 Tax=Psychr... [more]
A0A2D6RJ66_9GAMM1.820e-7253.63Chemotaxis protein n=1 Tax=Colwelliaceae bacterium... [more]
UPI00129E92523.990e-5638.74methyl-accepting chemotaxis protein n=2 Tax=unclas... [more]
A0A2S7UYW8_9GAMM1.060e-5255.00Methyl-accepting transducer domain-containing prot... [more]
UPI001C099CD32.460e-4841.80methyl-accepting chemotaxis protein n=1 Tax=unclas... [more]
UPI001FFC80A92.720e-4845.33methyl-accepting chemotaxis protein n=2 Tax=Pseudo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100532contigP-canaliculata_contig100532:1..921 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score188.7
Seed ortholog evalue4e-45
Seed eggNOG ortholog1328313.DS2_05850
KEGG koko:K03406
KEGG Pathwayko02020,ko02030,map02020,map02030
EggNOG free text desc.Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
EggNOG OGs1N544@1224,1SABI@1236,468TA@72275,COG0840@1,COG0840@2
COG Functional cat.NT
Best tax levelAlteromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02035
Hectar predicted targeting categoryother localisation
Exons1
Model size921
Cds size921
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.0336127-CDS-P-canaliculata_contig100532:0..9211622815579.0336127-CDS-P-canaliculata_contig100532:0..921Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100532 1..921 -
1693494148.1374426-CDS-P-canaliculata_contig100532:0..9211693494148.1374426-CDS-P-canaliculata_contig100532:0..921Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100532 1..921 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100532.116.1prot_P-canaliculata_contig100532.116.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100532 1..921 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100532.116.1

>prot_P-canaliculata_contig100532.116.1 ID=prot_P-canaliculata_contig100532.116.1|Name=mRNA_P-canaliculata_contig100532.116.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=307bp
MYQLIASPIQTIIHYVGFRTMIGVYAGVIISIIITHILNGYFSNLIPFHV
LSFELITLLYISIALMIICNKEVNLFNQMLSSLNAETFDYRELKANRLVS
AHFLEQLMSSYRELGRVNDKNKDKLSEVSYSAIQVIDTAHSVAENVQKQS
NATNAAAAAITEMSHSFSEVTVRIDDVHNASEYAFNTAEKGRESIASLKN
ILDKVAFEANQTAEDIETLMTLANHVAQISESIQGIADQTNLLALNASIE
AARAGEYGRGFAVVADEVRTLSHRSHAAADNIVKNVNLVINQGDKIRYSM
SNVVEQS
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mRNA from alignment at P-canaliculata_contig100532:1..921-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100532.116.1 ID=mRNA_P-canaliculata_contig100532.116.1|Name=mRNA_P-canaliculata_contig100532.116.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=921bp|location=Sequence derived from alignment at P-canaliculata_contig100532:1..921- (Pelvetia canaliculata dioecious)
ATGTATCAATTAATAGCTAGCCCAATACAAACAATTATCCATTATGTGGG CTTTAGAACCATGATTGGTGTTTATGCTGGTGTGATTATTTCAATCATCA TCACACATATTTTAAATGGTTATTTTTCCAACCTTATTCCTTTTCATGTG CTTTCTTTTGAATTAATTACCCTACTATATATTTCGATTGCATTAATGAT TATTTGTAATAAAGAGGTTAATTTATTTAATCAAATGTTGTCGTCATTAA ATGCAGAGACCTTTGATTATCGAGAGCTTAAAGCAAACCGGTTGGTTTCT GCGCATTTTCTTGAGCAACTGATGTCGTCTTATCGCGAACTTGGACGAGT TAATGATAAGAATAAAGACAAACTTAGTGAGGTGTCTTATTCTGCCATAC AGGTTATTGATACAGCCCATTCCGTCGCTGAAAATGTACAAAAACAGTCT AATGCAACTAATGCTGCTGCCGCCGCAATAACTGAAATGAGTCATTCATT TAGCGAAGTAACGGTGCGCATCGATGATGTTCATAATGCTTCTGAATATG CATTTAATACAGCAGAAAAAGGTCGAGAGTCTATTGCTTCTTTAAAAAAT ATTTTAGATAAAGTTGCTTTTGAAGCTAATCAAACGGCAGAGGATATTGA AACCTTGATGACACTTGCTAATCATGTTGCACAGATTTCTGAGTCAATAC AAGGCATTGCAGATCAAACTAATTTATTGGCACTAAATGCATCGATTGAA GCTGCAAGAGCAGGCGAATACGGTAGAGGCTTTGCCGTTGTTGCTGATGA AGTTCGCACACTTTCGCATCGTTCACATGCCGCGGCAGACAATATTGTTA AAAATGTTAATTTGGTTATTAATCAAGGTGATAAGATACGTTATAGTATG TCTAATGTGGTTGAACAATCT
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Coding sequence (CDS) from alignment at P-canaliculata_contig100532:1..921-

>mRNA_P-canaliculata_contig100532.116.1 ID=mRNA_P-canaliculata_contig100532.116.1|Name=mRNA_P-canaliculata_contig100532.116.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1842bp|location=Sequence derived from alignment at P-canaliculata_contig100532:1..921- (Pelvetia canaliculata dioecious)
ATGTATCAATTAATAGCTAGCCCAATACAAACAATTATCCATTATGTGGG
CTTTAGAACCATGATTGGTGTTTATGCTGGTGTGATTATTTCAATCATCA
TCACACATATTTTAAATGGTTATTTTTCCAACCTTATTCCTTTTCATGTG
CTTTCTTTTGAATTAATTACCCTACTATATATTTCGATTGCATTAATGAT
TATTTGTAATAAAGAGGTTAATTTATTTAATCAAATGTTGTCGTCATTAA
ATGCAGAGACCTTTGATTATCGAGAGCTTAAAGCAAACCGGTTGGTTTCT
GCGCATTTTCTTGAGCAACTGATGTCGTCTTATCGCGAACTTGGACGAGT
TAATGATAAGAATAAAGACAAACTTAGTGAGGTGTCTTATTCTGCCATAC
AGGTTATTGATACAGCCCATTCCGTCGCTGAAAATGTACAAAAACAGTCT
AATGCAACTAATGCTGCTGCCGCCGCAATAACTGAAATGAGTCATTCATT
TAGCGAAGTAACGGTGCGCATCGATGATGTTCATAATGCTTCTGAATATG
CATTTAATACAGCAGAAAAAGGTCGAGAGTCTATTGCTTCTTTAAAAAAT
ATTTTAGATAAAGTTGCTTTTGAAGCTAATCAAACGGCAGAGGATATTGA
AACCTTGATGACACTTGCTAATCATGTTGCACAGATTTCTGAGTCAATAC
AAGGCATTGCAGATCAAACTAATTTATTGGCACTAAATGCATCGATTGAA
GCTGCAAGAGCAGGCGAATACGGTAGAGGCTTTGCCGTTGTTGCTGATGA
AGTTCGCACACTTTCGCATCGTTCACATGCCGCGGCAGACAATATTGTTA
AAAATGTTAATTTGGTTATTAATCAAGGTGATAAGATACGTTATAGTATG
TCTAATGTGGTTGAACAATCTATGTATCAATTAATAGCTAGCCCAATACA
AACAATTATCCATTATGTGGGCTTTAGAACCATGATTGGTGTTTATGCTG
GTGTGATTATTTCAATCATCATCACACATATTTTAAATGGTTATTTTTCC
AACCTTATTCCTTTTCATGTGCTTTCTTTTGAATTAATTACCCTACTATA
TATTTCGATTGCATTAATGATTATTTGTAATAAAGAGGTTAATTTATTTA
ATCAAATGTTGTCGTCATTAAATGCAGAGACCTTTGATTATCGAGAGCTT
AAAGCAAACCGGTTGGTTTCTGCGCATTTTCTTGAGCAACTGATGTCGTC
TTATCGCGAACTTGGACGAGTTAATGATAAGAATAAAGACAAACTTAGTG
AGGTGTCTTATTCTGCCATACAGGTTATTGATACAGCCCATTCCGTCGCT
GAAAATGTACAAAAACAGTCTAATGCAACTAATGCTGCTGCCGCCGCAAT
AACTGAAATGAGTCATTCATTTAGCGAAGTAACGGTGCGCATCGATGATG
TTCATAATGCTTCTGAATATGCATTTAATACAGCAGAAAAAGGTCGAGAG
TCTATTGCTTCTTTAAAAAATATTTTAGATAAAGTTGCTTTTGAAGCTAA
TCAAACGGCAGAGGATATTGAAACCTTGATGACACTTGCTAATCATGTTG
CACAGATTTCTGAGTCAATACAAGGCATTGCAGATCAAACTAATTTATTG
GCACTAAATGCATCGATTGAAGCTGCAAGAGCAGGCGAATACGGTAGAGG
CTTTGCCGTTGTTGCTGATGAAGTTCGCACACTTTCGCATCGTTCACATG
CCGCGGCAGACAATATTGTTAAAAATGTTAATTTGGTTATTAATCAAGGT
GATAAGATACGTTATAGTATGTCTAATGTGGTTGAACAATCT
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