mRNA_P-canaliculata_contig10052.114.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10052.114.1
Unique NamemRNA_P-canaliculata_contig10052.114.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10052.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10052contigP-canaliculata_contig10052:4463..6581 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size331
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10052.114.1prot_P-canaliculata_contig10052.114.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10052 4463..6580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.8386903-CDS-P-canaliculata_contig10052:4462..45301622815578.8386903-CDS-P-canaliculata_contig10052:4462..4530Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10052 4463..4530 +
1693494148.00162-CDS-P-canaliculata_contig10052:4462..45301693494148.00162-CDS-P-canaliculata_contig10052:4462..4530Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10052 4463..4530 +
1622815578.8597796-CDS-P-canaliculata_contig10052:5440..55201622815578.8597796-CDS-P-canaliculata_contig10052:5440..5520Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10052 5441..5520 +
1693494148.0109468-CDS-P-canaliculata_contig10052:5440..55201693494148.0109468-CDS-P-canaliculata_contig10052:5440..5520Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10052 5441..5520 +
1622815578.872386-CDS-P-canaliculata_contig10052:5943..60841622815578.872386-CDS-P-canaliculata_contig10052:5943..6084Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10052 5944..6084 +
1693494148.0210683-CDS-P-canaliculata_contig10052:5943..60841693494148.0210683-CDS-P-canaliculata_contig10052:5943..6084Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10052 5944..6084 +
1622815578.885432-CDS-P-canaliculata_contig10052:6539..65801622815578.885432-CDS-P-canaliculata_contig10052:6539..6580Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10052 6540..6580 +
1693494148.0307324-CDS-P-canaliculata_contig10052:6539..65801693494148.0307324-CDS-P-canaliculata_contig10052:6539..6580Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10052 6540..6580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10052.114.1

>prot_P-canaliculata_contig10052.114.1 ID=prot_P-canaliculata_contig10052.114.1|Name=mRNA_P-canaliculata_contig10052.114.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=110bp
RHPPCCTVGACSPTMNPGEGRGSEPAKPKFRPKASSRKKPALPTPPPPSE
NDYRAAVAKYRSGGGGSGGGGGRSWARGGDERGRSGRDWGRGRGYEGRGQ
RFRWPDNRFG
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mRNA from alignment at P-canaliculata_contig10052:4463..6581+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10052.114.1 ID=mRNA_P-canaliculata_contig10052.114.1|Name=mRNA_P-canaliculata_contig10052.114.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2119bp|location=Sequence derived from alignment at P-canaliculata_contig10052:4463..6581+ (Pelvetia canaliculata dioecious)
CGCCACCCACCCTGCTGCACGGTCGGAGCTTGCTCGCCAACGATGAATCC
TGGAGAGGGGAGAGGAAGGTGGGCGGAATTTTACATAATTTACCCCCGTA
GTCTCGAGTGCGCTACGCCCTACTATGTCCATTCTTCAAAAATGAACCTC
AAGCCTCTGGGACTTGCAGTGTATGCATAAACATTTGGCAGTAACCCTCC
CTCAGGCCATCAACGAGGTGCCATAGCCTCCGTGCAAGTTGTGGTGCGGC
GTGGCATGGCGCGTCTCTCCGTAAGCCTTTAAGGATTAGACCCACGGTTT
TATGAGTTGCTGAGATGCTGTTACGTGTTAGCCTTTCTTGGGGAAATGAC
TGCGTTGGAGATGCTGTCTCCGATACATTCTGTAAAACTACAGTACAGAC
AGCGGAATACGGAACAAACACTCTCTAGTCTAGCCGCTTCATCCCAGGAC
GTGGCAGCAAGGTCTGATTAATGGACAGTTTTTTCTACAGTTTATTCTCT
ACAACAGTTTGTTCTCTACATAAATCCCTTTAGGTCGTTTTCTCATGTAT
CAAATATGACAACGTTATTCTGTACCAAAAGTCAAGTACTACCGCGGTGG
AAGCCCCACGTCAAACAAGTTGGAAGGTGCATGGGGCCTCGATAAGTTAT
TTACCCGCGCACAGAACATAAAAGACAAAAACCATGGAACCGTTTTAGCT
GAACGTTGATCACCCGCCTTTAGTCCGTATGGCCTACAAGCCTGTCAAGC
ATCCGTTAAGGGCAGGTAGCTATTTTAGCGCCCATTCTCCGCTCTATTTT
ACCTGGCCGCGGCAGACACTTGTCAGTTCCGTTGCTGTGAACCACGTCGT
GAAGAACGAAGGAAGCGGTATACAGTAGACGGTACAGTATACGAGGTCGC
CACTTCTCGCGTTGCCGTTCCTTACCTATCGCCTGGTGCCCTCTTGTTGC
CGCGCGTTTTTTCCATTCGCTGGAACAGCGAGCCAGCGAAGCCAAAGTTC
AGGCCGAAGGCGTCGTCGAGGAAGAAGCCGGCGCTTCCAACTCCGCCGCC
TCCCTCAGGTGACTGTTGTCAACTCGACCAGGATCACGGAGACGAGATGC
GCACGCGAGGTTTCCCCCCTGTATCGGTCGGTCGCGTGGCGTCGGACGCC
CAACAAAGCCCCTACCCTCTCAATTCTCACTGTCGTGGTCCGTCTGACCA
TGCCCTCTTGTGATAGCGAATATTTACCCCTGCAGACATCCCCTCTGTTC
GCTGCGATACCGTGGTCTGTGCTTCATGCTCGTAAACTGCGTCTTGAGGC
GTACTTGGTAGCTCTCCAGCATCATTGTTCTAGATTGCGTTACAGGTTGC
ACCCGACGTCTTTCGCCAGGAGCGACAGTCGTCTCCTCTGACCCGTGTGC
TTTCGAAAGAGTTTGACTTCTTTTTTAAACCCTGCGCGGTCCGATCCCGA
CTTTCACGGGGGTGTGCGCGGCCATCTTCAGAGAATGACTACCGAGCAGC
CGTAGCCAAGTACCGGTCCGGTGGTGGCGGGAGCGGTGGTGGAGGCGGGA
GAAGCTGGGCGCGAGGTGGCGATGAAAGGGGAAGAAGCGGGAGAGATTGG
GGCCGGGGACGAGGGTATGAAGGTGAACAGCCCCCCCCCCCCCACCCCTT
CCTTTTGCGTCTGTCGAGTAGCAGCGTGTGGCGCACGCGGTTGCCCGCCT
GCAGAATTGAACCAGCTACTGTATTGTAGTCTCTTGGTTCAGAGTGCCGG
TACACTGCAGATGCGGTTTCCTGCGCGAGCGGTAAGAGGTCACACGCTCG
TTCGTCCCGGATAGAACTCGTTGCCTTTCATTGCCACACGGCATGGCGCG
TTCCGCGGGGGTTGGTATCCCGGCTGCTACTATTTCCTGCGCCCTCCTTC
TGCTGGAAATTGGCTTCGAACCAAGGGCTGCTGTCTGCCAGAGGTCAAAA
GGGGGCGCGCCCATGTTTTTTCTTCTACCCGCTTTTGCTCTTACCATGGG
CGGCAGAGGACTCCGGCCACGGAGCTTTACGGGGTCGGCACGCTTGTCTT
TGCTCTACCTTTGACCGCACACCGCAGGGCGAGGGCAACGTTTTCGATGG
CCCGATAACCGATTTGGTG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10052:4463..6581+

>mRNA_P-canaliculata_contig10052.114.1 ID=mRNA_P-canaliculata_contig10052.114.1|Name=mRNA_P-canaliculata_contig10052.114.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at P-canaliculata_contig10052:4463..6581+ (Pelvetia canaliculata dioecious)
CGCCACCCACCCTGCTGCACGGTCGGAGCTTGCTCGCCAACGATGAATCC
TGGAGAGGGGAGAGGAAGCGCCACCCACCCTGCTGCACGGTCGGAGCTTG
CTCGCCAACGATGAATCCTGGAGAGGGGAGAGGAAGCGAGCCAGCGAAGC
CAAAGTTCAGGCCGAAGGCGTCGTCGAGGAAGAAGCCGGCGCTTCCAACT
CCGCCGCCTCCCTCAGCGAGCCAGCGAAGCCAAAGTTCAGGCCGAAGGCG
TCGTCGAGGAAGAAGCCGGCGCTTCCAACTCCGCCGCCTCCCTCAGAGAA
TGACTACCGAGCAGCCGTAGCCAAGTACCGGTCCGGTGGTGGCGGGAGCG
GTGGTGGAGGCGGGAGAAGCTGGGCGCGAGGTGGCGATGAAAGGGGAAGA
AGCGGGAGAGATTGGGGCCGGGGACGAGGGTATGAAGAGAATGACTACCG
AGCAGCCGTAGCCAAGTACCGGTCCGGTGGTGGCGGGAGCGGTGGTGGAG
GCGGGAGAAGCTGGGCGCGAGGTGGCGATGAAAGGGGAAGAAGCGGGAGA
GATTGGGGCCGGGGACGAGGGTATGAAGGGCGAGGGCAACGTTTTCGATG
GCCCGATAACCGATTTGGTGGCGAGGGCAACGTTTTCGATGGCCCGATAA
CCGATTTGGT
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