mRNA_P-canaliculata_contig100486.110.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100486.110.1
Unique NamemRNA_P-canaliculata_contig100486.110.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: A0A6H5KHY2_9PHAE (Bulb-type lectin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHY2_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 6.110e-26
Identity = 49/72 (68.06%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGSQPGDFRRNVLPSGSV 216
            KE A YDY KPGLS+NT +FT NVW+LTTHVGFGV +A+YKG+ T +V   FSP+G+Q GDF RNVLP GSV
Sbjct:   14 KEEARYDYGKPGLSSNTSHFTANVWRLTTHVGFGVFRAKYKGESTMWVVGYFSPRGNQAGDFARNVLPRGSV 85          
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: D8LBB2_ECTSI (Novel protein (Wu:fd05a10) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB2_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 3.220e-24
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGSQPGDFRRNVLPSGSV 216
            KE A YDY KPGLS+NT +FT NVW+LTTHVGFGV +A YKGK T +V A FSP+G+Q GDF RNVL  GSV
Sbjct:  126 KEEAGYDYGKPGLSSNTSHFTANVWRLTTHVGFGVFRATYKGKSTMWVVAYFSPRGNQAGDFARNVLRRGSV 197          
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: UPI0003495F59 (CAP family protein n=1 Tax=Nocardiopsis lucentensis TaxID=53441 RepID=UPI0003495F59)

HSP 1 Score: 64.7 bits (156), Expect = 3.910e-11
Identity = 33/68 (48.53%), Postives = 38/68 (55.88%), Query Frame = 1
Query:   13 HYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYK-GKITCFVAAAFSPKGSQPGDFRRNVLPSGS 213
            HYDY+ PG S+ TGNFT  VWK T  VG G+   R + G   C V   F P G+  G F  NVLP  S
Sbjct:  116 HYDYNTPGFSSKTGNFTQLVWKSTERVGVGIAATREENGWHGCMVVGRFDPPGNYVGRFEENVLPPNS 183          
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: D7FLA1_ECTSI (Contains SCP domain which is found in plant PR1 and cysteine-rich proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA1_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.800e-10
Identity = 35/75 (46.67%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKA--RYKGKITCFVAAAFSPKGSQPGDFRRNVLPSGSVS 219
            +EG  YDY+ P  S  T +FT NVW+ TTHVGFG G A  +Y      +V A F   G+    F  NVLP  SVS
Sbjct:   76 QEGTLYDYENPAFSPATRHFTQNVWRRTTHVGFGFGSAVDQYGKYWVSYVVAKFFTPGNVVDQFEGNVLPPVSVS 150          
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: A0A1B8XYW5_XENTR (Uncharacterized protein (Fragment) n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A1B8XYW5_XENTR)

HSP 1 Score: 58.2 bits (139), Expect = 3.930e-8
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGS--QPGDFRRNVLPSGS 213
            KE  +Y++ KPG  A+TG+FT  VWK +  VG G+  +   GK    V A ++P G+   PG + RN+LP GS
Sbjct:  485 KEEKNYNFSKPGYQADTGHFTQMVWKASKEVGVGLASS---GKGMLIVVAQYNPSGNITNPGFYGRNILPRGS 554          
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: Q5U4W9_XENLA (GLI pathogenesis-related 2 S homeolog n=6 Tax=Xenopus TaxID=8353 RepID=Q5U4W9_XENLA)

HSP 1 Score: 58.2 bits (139), Expect = 3.950e-8
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGS--QPGDFRRNVLPSGS 213
            KE  +Y++ KPG  A+TG+FT  VWK +  VG G+  +   GK    V A ++P G+   PG + RNV P GS
Sbjct:  673 KEEKNYNFSKPGYQADTGHFTQMVWKASNEVGVGLASS---GKGMIIVVAQYNPSGNITNPGFYARNVFPQGS 742          
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: A0A0K0E6I9_STRER (SCP domain-containing protein n=1 Tax=Strongyloides stercoralis TaxID=6248 RepID=A0A0K0E6I9_STRER)

HSP 1 Score: 57.0 bits (136), Expect = 6.980e-8
Identity = 29/62 (46.77%), Postives = 36/62 (58.06%), Query Frame = 1
Query:   16 YDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGSQPGDFRRNVL 201
            YD+ K G SA TG+FT  VWK TTH GFGV     +     +V   +SP G+ PG+F  NV 
Sbjct:  194 YDFSKQGHSAETGHFTQLVWKDTTHAGFGV----VEKDDVVYVVCKYSPPGNYPGEFEANVF 251          
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: A0A0N4UTA7_ENTVE (SCP domain-containing protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4UTA7_ENTVE)

HSP 1 Score: 53.9 bits (128), Expect = 7.710e-8
Identity = 28/64 (43.75%), Postives = 36/64 (56.25%), Query Frame = 1
Query:   13 HYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGSQPGDFRRNVLP 204
            +Y+Y  PG  ANTG+FT  VWK +  VG G+ K+   G     V A + P G+  G F  NVLP
Sbjct:   20 YYNYSCPGFCANTGHFTQLVWKSSQRVGVGIAKSSRTGMTV--VVANYYPAGNMMGQFPSNVLP 81          
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: Q6DCW5_XENLA (GLI pathogenesis-related 2 L homeolog n=5 Tax=Xenopus laevis TaxID=8355 RepID=Q6DCW5_XENLA)

HSP 1 Score: 56.6 bits (135), Expect = 1.370e-7
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGS--QPGDFRRNVLPSGS 213
            KE  +Y++ K G  A+TG+FT  VWK +  VG G+    + GK    V A ++P G+   PG + RNVLP GS
Sbjct:  469 KEEKNYNFSKSGYQADTGHFTQMVWKASKEVGVGLA---FSGKGMIIVVARYNPSGNITNPGFYSRNVLPRGS 538          
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Match: UPI001129AB8A (uncharacterized protein LOC115097266 isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI001129AB8A)

HSP 1 Score: 55.1 bits (131), Expect = 4.830e-7
Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAAAFSPKGS--QPGDFRRNVLPSGS 213
            KE  +YD+  P   ANTG+FT  VW+ +  VG  VGKA   GK    V A ++P G+   PG +  NVLP+GS
Sbjct:  664 KEETNYDFSNPDYQANTGHFTQMVWRSSKEVG--VGKAT-NGKGMFIVVALYNPTGNITNPGYYSSNVLPAGS 733          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100486.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KHY2_9PHAE6.110e-2668.06Bulb-type lectin domain-containing protein n=1 Tax... [more]
D8LBB2_ECTSI3.220e-2469.44Novel protein (Wu:fd05a10) n=1 Tax=Ectocarpus sili... [more]
UPI0003495F593.910e-1148.53CAP family protein n=1 Tax=Nocardiopsis lucentensi... [more]
D7FLA1_ECTSI1.800e-1046.67Contains SCP domain which is found in plant PR1 an... [more]
A0A1B8XYW5_XENTR3.930e-842.47Uncharacterized protein (Fragment) n=1 Tax=Xenopus... [more]
Q5U4W9_XENLA3.950e-842.47GLI pathogenesis-related 2 S homeolog n=6 Tax=Xeno... [more]
A0A0K0E6I9_STRER6.980e-846.77SCP domain-containing protein n=1 Tax=Strongyloide... [more]
A0A0N4UTA7_ENTVE7.710e-843.75SCP domain-containing protein n=1 Tax=Enterobius v... [more]
Q6DCW5_XENLA1.370e-742.47GLI pathogenesis-related 2 L homeolog n=5 Tax=Xeno... [more]
UPI001129AB8A4.830e-745.21uncharacterized protein LOC115097266 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100486contigP-canaliculata_contig100486:527..748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue3.1e-20
Seed eggNOG ortholog2880.D8LBB2
EggNOG free text desc.peptidase inhibitor activity
EggNOG OGsCOG2340@1,KOG3017@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncontains SCP domain which is found in plant PR1 and cysteine-rich proteins
Ec32 orthologEc-15_004870.1
Exons1
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.2014115-CDS-P-canaliculata_contig100486:526..7481622815578.2014115-CDS-P-canaliculata_contig100486:526..748Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100486 527..748 +
1693494147.5917022-CDS-P-canaliculata_contig100486:526..7481693494147.5917022-CDS-P-canaliculata_contig100486:526..748Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100486 527..748 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100486.110.1prot_P-canaliculata_contig100486.110.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100486 527..748 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100486.110.1

>prot_P-canaliculata_contig100486.110.1 ID=prot_P-canaliculata_contig100486.110.1|Name=mRNA_P-canaliculata_contig100486.110.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=74bp
KEGAHYDYDKPGLSANTGNFTNNVWKLTTHVGFGVGKARYKGKITCFVAA
AFSPKGSQPGDFRRNVLPSGSVS*
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mRNA from alignment at P-canaliculata_contig100486:527..748+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100486.110.1 ID=mRNA_P-canaliculata_contig100486.110.1|Name=mRNA_P-canaliculata_contig100486.110.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at P-canaliculata_contig100486:527..748+ (Pelvetia canaliculata dioecious)
AAAGAGGGCGCTCACTACGACTACGACAAGCCGGGCCTGAGCGCAAACAC GGGTAACTTCACCAACAACGTCTGGAAGCTGACCACGCACGTCGGGTTCG GCGTGGGCAAAGCTCGCTACAAAGGAAAAATCACCTGCTTCGTCGCGGCC GCTTTTTCCCCCAAGGGCAGCCAGCCAGGCGACTTCAGGCGCAATGTTCT CCCAAGCGGATCGGTGAGCTAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100486:527..748+

>mRNA_P-canaliculata_contig100486.110.1 ID=mRNA_P-canaliculata_contig100486.110.1|Name=mRNA_P-canaliculata_contig100486.110.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at P-canaliculata_contig100486:527..748+ (Pelvetia canaliculata dioecious)
AAAGAGGGCGCTCACTACGACTACGACAAGCCGGGCCTGAGCGCAAACAC
GGGTAACTTCACCAACAACGTCTGGAAGCTGACCACGCACGTCGGGTTCG
GCGTGGGCAAAGCTCGCTACAAAGGAAAAATCACCTGCTTCGTCGCGGCC
GCTTTTTCCCCCAAGGGCAGCCAGCCAGGCGACTTCAGGCGCAATGTTCT
CCCAAGCGGATCGGTGAGCTAGAAAGAGGGCGCTCACTACGACTACGACA
AGCCGGGCCTGAGCGCAAACACGGGTAACTTCACCAACAACGTCTGGAAG
CTGACCACGCACGTCGGGTTCGGCGTGGGCAAAGCTCGCTACAAAGGAAA
AATCACCTGCTTCGTCGCGGCCGCTTTTTCCCCCAAGGGCAGCCAGCCAG
GCGACTTCAGGCGCAATGTTCTCCCAAGCGGATCGGTGAGCTAG
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