mRNA_P-canaliculata_contig10046.108.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10046.108.1
Unique NamemRNA_P-canaliculata_contig10046.108.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10046.108.1 vs. uniprot
Match: D7FNR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNR2_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 4.380e-62
Identity = 99/129 (76.74%), Postives = 113/129 (87.60%), Query Frame = 3 
Query:  606 KYIVPKYAKSAISGEWVLMWQNTGAVFRLRLSEDGQFESFGGLGTGHLGGRWNTWDADRMFMTVVRSKSHGVQVNGDTMFWGTKIIGPPDSEIPLKISGYVMYGFLEPTCVGRFIMRRSQEAQDGENDT 992
            KY+ PKY+K+AI+G+WVLMWQ+TGAVFRL L ED QFES  GLG+G LGGRWN W  +RMFMTVVRSKSHGVQ++GD MFWGTK+ GPPDS+IPLKISGYVMYGFLEPTCVGRFIMRRSQE +  + DT
Sbjct:  163 KYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERMFMTVVRSKSHGVQMHGDHMFWGTKLEGPPDSKIPLKISGYVMYGFLEPTCVGRFIMRRSQEGRTSDEDT 291
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BLAST of mRNA_P-canaliculata_contig10046.108.1 vs. uniprot
Match: A0A835YV66_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV66_9STRA)

HSP 1 Score: 114 bits (286), Expect = 6.160e-25
Identity = 63/158 (39.87%), Postives = 85/158 (53.80%), Query Frame = 3 
Query:  510 PLQAGERENVSRFESVDS*LLCFRSHAPTYQGKYIVPKYAKSAISGEWVLMWQNT----GAVFRLRLSEDGQFESFGGLGTGH-LGGRWNTWDADRMFMTVVRSKSHGVQVNGDTMFWGTKIIGPPDSEIPLKISGYVMYGFLEPTCVGRFIMRRSQE 968
            P   G+ +      S+ + L+         Q   I P Y+K  +SG W+L+        G VF L L+EDG F S  G+G G  L GRWNTWD ++  +TVVR KS G Q+  D  +WG KI G  D   P +I+G +MYG+LEPT +G F M R  +
Sbjct:  104 PFVVGDFQMTPVVASMSTDLMALARRRDEQQS--ITPLYSKKVLSGPWLLVHSGVSGLRGGVFELMLTEDGGFASVRGVGAGGMLAGRWNTWDREKFILTVVRLKSRGAQMTADHQYWGFKIHG--DGVTPTRITGEIMYGYLEPTSIGCFTMMRPSQ 257
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BLAST of mRNA_P-canaliculata_contig10046.108.1 vs. uniprot
Match: A0A6H5LDX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.090e-17
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 3 
Query:  606 KYIVPKYAKSAISGEWVLMWQNTGAVFRLRLSEDGQFESFGGLGTGHLGGRWNTWDADRM 785
            KY+ PKY+K+AI+G+WVLMWQ+TGAVFRL L ED QFES  GLG+G LGGRWN W  +R+
Sbjct:  282 KYVAPKYSKAAIAGDWVLMWQDTGAVFRLHLGEDLQFESLKGLGSGQLGGRWNLWGTERL 341
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10046.108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FNR2_ECTSI4.380e-6276.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YV66_9STRA6.160e-2539.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5LDX9_9PHAE1.090e-1768.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10046contigP-canaliculata_contig10046:7016..11507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_004560.1
Exons5
Model size1862
Cds size375
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.0185034-UTR-P-canaliculata_contig10046:7015..78431622815578.0185034-UTR-P-canaliculata_contig10046:7015..7843Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10046 7016..7843 -
1693494147.4566026-UTR-P-canaliculata_contig10046:7015..78431693494147.4566026-UTR-P-canaliculata_contig10046:7015..7843Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10046 7016..7843 -
1622815578.0993907-UTR-P-canaliculata_contig10046:10598..111261622815578.0993907-UTR-P-canaliculata_contig10046:10598..11126Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10046 10599..11126 -
1693494147.5136766-UTR-P-canaliculata_contig10046:10598..111261693494147.5136766-UTR-P-canaliculata_contig10046:10598..11126Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10046 10599..11126 -
1622815578.1137903-UTR-P-canaliculata_contig10046:11376..115071622815578.1137903-UTR-P-canaliculata_contig10046:11376..11507Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10046 11377..11507 -
1693494147.5530522-UTR-P-canaliculata_contig10046:11376..115071693494147.5530522-UTR-P-canaliculata_contig10046:11376..11507Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10046 11377..11507 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.0360267-CDS-P-canaliculata_contig10046:7843..79511622815578.0360267-CDS-P-canaliculata_contig10046:7843..7951Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10046 7844..7951 -
1693494147.4678752-CDS-P-canaliculata_contig10046:7843..79511693494147.4678752-CDS-P-canaliculata_contig10046:7843..7951Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10046 7844..7951 -
1622815578.055449-CDS-P-canaliculata_contig10046:8371..84161622815578.055449-CDS-P-canaliculata_contig10046:8371..8416Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10046 8372..8416 -
1693494147.4805684-CDS-P-canaliculata_contig10046:8371..84161693494147.4805684-CDS-P-canaliculata_contig10046:8371..8416Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10046 8372..8416 -
1622815578.069679-CDS-P-canaliculata_contig10046:8702..88021622815578.069679-CDS-P-canaliculata_contig10046:8702..8802Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10046 8703..8802 -
1693494147.4947755-CDS-P-canaliculata_contig10046:8702..88021693494147.4947755-CDS-P-canaliculata_contig10046:8702..8802Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10046 8703..8802 -
1622815578.0851862-CDS-P-canaliculata_contig10046:10476..105981622815578.0851862-CDS-P-canaliculata_contig10046:10476..10598Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10046 10477..10598 -
1693494147.50448-CDS-P-canaliculata_contig10046:10476..105981693494147.50448-CDS-P-canaliculata_contig10046:10476..10598Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10046 10477..10598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10046.108.1prot_P-canaliculata_contig10046.108.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10046 7844..10598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10046.108.1

>prot_P-canaliculata_contig10046.108.1 ID=prot_P-canaliculata_contig10046.108.1|Name=mRNA_P-canaliculata_contig10046.108.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=125bp
MWQNTGAVFRLRLSEDGQFESFGGLGTGHLGGRWNTWDADRMFMTVVRSK
SHGVQVNGDTMFWGTKIIGPPDSEIPLKISGYVMYGFLEPTCVGRFIMRR
SQEAQDGENDTDADDDDDRDEDLV*
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mRNA from alignment at P-canaliculata_contig10046:7016..11507-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10046.108.1 ID=mRNA_P-canaliculata_contig10046.108.1|Name=mRNA_P-canaliculata_contig10046.108.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4492bp|location=Sequence derived from alignment at P-canaliculata_contig10046:7016..11507- (Pelvetia canaliculata dioecious)
GTACACACTGCGGTGAGCGGGGTGGGCGAGTCGGGCGGGCAAGACCAGCA
TGGGCGCTGGCGTGTGCGGGGCAACGAGTTCTCGCTAACGGTCGACCGAC
GCTCGAAGTCCAGGATGCTTGAAGACTTGAGGTACATCACTGCATATAGC
TACAACAGCACTCACCTCAGCGCCTACCGCACGTGTACGAATGACGTGAT
AATCCTGCAACTAACAGCGGTGTCTCTTTATGTGTACCTATTTTTTACAC
CGTTGGCTGCCCAAGCAACAACATCGGCAACGCTACCACGCTTTCCAACT
TTTCGCAAGTGTGAAAAGGTTTGCTCAGCGCTGCGACTGCCTTACGTTGA
CCTCCGCGACTGATATTCACCTCGAGAACAGATACGTTGGGGTGCTGAAG
AAGTTCAGCAAGTACATTGAGGGAAGCGTGATCGAGGGAGCGATGGACCC
CGCCGTCGTCGGAAAGTTCAAGATGACGCCACTCGTTTCGAGCATGGCTT
CTGACCTCAAGAAGGCGGCTGAGGCCAACGATTCGGTCAGCGGCTTGTGT
GGAGGACGGCAGCCGAACGTCGTCCGCTATCACCCGTTCGTTTCGTATTC
TTACTCTGCCAATGGACTACTGCTGTAGTCCGATCTTGATCCCGTTCTAT
TCTTGATTATAGCAAGTTCTTACGCTCGAAACGCCCGACTTTTGCCCCTT
GAAGATCAGATGCGTCGAACGTTCCTTTTCCTAGGAGCACTCCTCAATGA
CAACATTAACCATTACAGGCGGGTGAACGTGAAAACGTTTCCCGTTTCGA
GAGTGTTGACTCTTAACTGCTCTGCTTCCGCTCACATGCTCCTACATATC
AGGGCAAGTACATCGTTCCAAAGTATGCAAAGTCCGCCATCTCAGGGGAA
TGGGTTCTGATGTGGCAGAACACTGGGGCCGTCTTCCGACTCCGCCTGAG
CGAAGATGGGCAATTCGAGAGCTTCGGAGGATTAGGAACGGGGCATCTAG
GAGGGAGATGGAATACTTGGGATGCTGACAGGTGCGAGCAAAGGATACGA
TCGGAGACTACAGTGATCCTAGCCCGGTCTACGGGATAGAGGACACGTTT
AAAGTGAAGTGAAAAGAGCGCTGATTATGGGGATGCTGCGATCCGACACG
AGTGGAAAGCATCTAACGTAAGGCCCAAACGTGCTAGCTGTACACCAACT
CCTCGAGTTAGTCAAATGTTGCACAGCTGGGCCAGGGAAATATTAACTTT
CCCTGTTCAGCTGACCACGAGCAGGATTGGCAACTTTACCCGGTTGATCA
ATACTCTGCTGCAAGTGGTGGTCATACATAAATACATACATGGGTAATAG
ATGGACCACATAATGCGGAGTCCACATGCTCTGTACTTGCTGAGTTCCTT
TTGTTGTTGAGAAACCGATGAGTGTTGCGAAGGCACTGCCGCTTTTGTGG
AGTATGTAACGACCTCTTCTACAGCACATACTGCCTGTTAGCTCGTTGAC
CACTAGACGTGGTCATCGATTACATCGTACTGTACTGTATTTATCGTTGT
TTGTATATATGTATGTATGGTCACACATATAGCAAGAGTATGGATCGACC
GGGTAAGGTTTCCAATCCTGCTCATGGTCAGCTGAACAGGGAAAATAAAC
ACTTTCCTGTCCGCGTTCGCGCCTGGGAATTTGGTCTCGCGAGACGTGAT
CGGCAGTCCCATCCCGCGTCAGCCTGCCCATCTCCATACTCAGGCTGAAT
CTGGTGCNNNNNNNNNNTATCAGGACAGTCCCGAGTTTATCGGGTCGCGC
AATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACGGGGCCA
GTAAACCTCGATGTAGTTCCAAGCGAGTGCTGCTTCGGCAGGCCATCATG
GGCCAATTAATATGTGCCTCTCTTTTCCACACCCACTATTGGTATGAAGT
GGGTATGTTGAAAGTACCGGCGTATTTAATCGGAGACTTGATCCCCCGTG
TCCTCATGTAGTTTCCCCCCCCTAATATTATATAAACATTTATTTTATTT
TATAAAAACAGTAGAGAAATCGTTTACCTAAGGCATATGAGCTCATTGTT
TAAAATATTTTTATATTGTCATTTATGGAACGTGGGACAAGATATCCCGA
ACAACCTGAAGAGAAAAAAAAAATGTTCGGTTTTCAGCATTTTGTTTTTC
CTTGCTTACAGACTACTACGTCAGAACACCTGCCCCCCCCTTTCTAGAGA
AGATATCTGATCTTGATACATGTATACGCATGTAAGTCTGATGGGGGATG
AGAATGCAAAGAACCTGATTTCTATCATATTAAAAGTGTAACACAGCGAT
ATGAAGCCCAATGCAGTTACTGTTCACACGATAGAAAAATCTAAACGCGT
TCAAACCTTCCAGCTGATGTGGCTTCCTCATTTCAATGAAATAAGGAAAG
GGTTCGATCCCCATCGTCGTTAAGCGATCGTTTCATGTGATAGTTAAAAG
ATTAGAGAGGATTTTTTTTTTGTGGGTGTAGGTATTTTTTTGAGGTCCTT
CGCCAGCGCTTGGTGCATGTTGCCGCTTGCAAAGATTTCAAACCTTCCCA
TTAATAGCTCAACACGACTCTGAGCATAACAACTATAATAGTCTCAGCGA
ACTCTATGGGGGGGGTATCGTGTGTAACTCGCTTCGACGTTTCTTGATGT
GTCAGGATGTTCATGACCGTGGTGCGTTCAAAGAGCCATGGGGTCCAGGT
GAACGGAGACACGATGTTCTGGGGAACGAAGATCATTGGCCCGCCCGATT
CGGAGGTGAAATAATGCCAAGTGACAGTCCAGTTAGGTGCATGACCAGAT
ACTTGTTTTCCAAGGCTACGGGAAGCACGATATGGTCCAGTGGTCCCCAC
ACACGCTGCACTGTTTTTCGCTCTGAAGGCACAGACGCTTTGTGAGAGCT
GCGATAAGTGACGCGCTCCTATTTATTCACTTCACGAGAGTGGATATCAA
CGCGCAACTGTCGCATGTATTGCAGATCCTCGAGCGTCACCTGCGTTGAG
TCGTGACTTGCGCAACCCTCCTGATTTTTGCTCCCGAACAGATTCCGTTG
AAGATATCTGGGTACGTCATGTACGGTTTCCTTGAGGTGGGCGCCGAGGT
TCCCGTCCACGAACGACAGGGTTGCTCTAATAAAACCACAAACCGCAGTG
TGGAAAACAGTGGCGTAGCAGGAGGCGACATGTGTGAACCGAGAAGTCCT
CCGTACAATCAAATGACGATAAAAATCTACAAGTTGTGTTGAGCAACATT
CCGGTGATCATAGGTTCGCTGGAAGGGTCCCGAATCCATTTCAACCTTTT
TTTCATACCTGTGTGTTTGATATCGAGATCCGTTGTCTCGGTAGAGTCCG
CCATTTCTTACCCGCCAAGCCGTGCCATCTTCGGCTGGGGGCAACAGCTT
CCCGACACGCACACCCAACGCTCATCGTTCGCTCGAGCATTCAGAAGCAG
TGTGAGGTGACTGATCACTCCCTCTCAACCTTGTCCCTCGCGTTTTGACC
AAGCAGCCGACTTGCGTCGGGCGCTTCATCATGCGCCGCAGTCAAGAGGC
TCAAGACGGCGAAAACGATACGGATGCCGACGACGACGATGATCGCGACG
AAGACCTCGTGTAAGCCTAAAGCATGCGCTAGGCCCGAGCGATTTTGAAG
TCTCCGCAGTGCTAGACTCCTTTCGAGACAACACCCCAAGCAAGGTTTGT
ATAGAAGTTGGTGTGAGGGTTGGAGCTTGCGCGAGATCAGTGGGATGCGG
GCTGCGCTCAGATATTTTGCAACCCTCGTCAACTTAACCGGAATGGCCTT
ACGGTGACAAATCAGTATATATCGTGTAAACATAGTACGGGCCATGTACA
GGAGAGAGGCGATTTTTGCGAACAAAAGTTGTTGATGTAACAGACGGGGG
GGAAACCTCGCGATTGCCGTGGCTCAGCACGGCTGTACGGTAATATGTGT
TAATGGTTTGTCGGGTTTCACGCGACTTATTCGGCTGCACCGTGAACTTA
GAGGTAATCCGTGTCGCGATCCGAGGTTTTATGTAGAGTTGGAATGTCTT
CCAGAGCGGAAATGGTGTTCTGTAACGCTATCGAAAGATGAGAAGGCAAA
CAACATGACTCGTCTGTGCGCTGTACATACGACGTAAATATCTTTACGCA
GATTTGACGGATGGGGAAGGGCAAGTTGAGTGTCTCCCTGGCACAGTCTA
TGTAACCGGTTGGATTTCAGTCAGTTGTCGAAATCCACAGCTAGAAAAAA
TATTTGTCATTTGCACCTTAATTGATACAGAAATACTCCAATCAGCATCT
AATTAGCAAAGGGGATAGGACGTAAGTGTATCTGCCTATAAACTTGAGCA
ATGTAGAAAAAAAATGTTCGAGAGCTTTGATGCTCATAATATTAAATGAT
CGCACGTTCACGGCCTAAATACACCTGCATTAACGAGCTCCA
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Coding sequence (CDS) from alignment at P-canaliculata_contig10046:7016..11507-

>mRNA_P-canaliculata_contig10046.108.1 ID=mRNA_P-canaliculata_contig10046.108.1|Name=mRNA_P-canaliculata_contig10046.108.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at P-canaliculata_contig10046:7016..11507- (Pelvetia canaliculata dioecious)
ATGTGGCAGAACACTGGGGCCGTCTTCCGACTCCGCCTGAGCGAAGATGG
GCAATTCGAGAGCTTCGGAGGATTAGGAACGGGGCATCTAGGAGGGAGAT
GGAATACTTGGGATGCTGACAGATGTGGCAGAACACTGGGGCCGTCTTCC
GACTCCGCCTGAGCGAAGATGGGCAATTCGAGAGCTTCGGAGGATTAGGA
ACGGGGCATCTAGGAGGGAGATGGAATACTTGGGATGCTGACAGGATGTT
CATGACCGTGGTGCGTTCAAAGAGCCATGGGGTCCAGGTGAACGGAGACA
CGATGTTCTGGGGAACGAAGATCATTGGCCCGCCCGATTCGGAGGATGTT
CATGACCGTGGTGCGTTCAAAGAGCCATGGGGTCCAGGTGAACGGAGACA
CGATGTTCTGGGGAACGAAGATCATTGGCCCGCCCGATTCGGAGATTCCG
TTGAAGATATCTGGGTACGTCATGTACGGTTTCCTTGAGATTCCGTTGAA
GATATCTGGGTACGTCATGTACGGTTTCCTTGAGCCGACTTGCGTCGGGC
GCTTCATCATGCGCCGCAGTCAAGAGGCTCAAGACGGCGAAAACGATACG
GATGCCGACGACGACGATGATCGCGACGAAGACCTCGTGTAACCGACTTG
CGTCGGGCGCTTCATCATGCGCCGCAGTCAAGAGGCTCAAGACGGCGAAA
ACGATACGGATGCCGACGACGACGATGATCGCGACGAAGACCTCGTGTAA
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