prot_P-canaliculata_contig100408.104.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig100408.104.1
Unique Name	prot_P-canaliculata_contig100408.104.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	181

Homology

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BLAST of mRNA_P-canaliculata_contig100408.104.1 vs. uniprot
Match: A0A517Y623_9BACT (Uncharacterized protein n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517Y623_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 2.810e-15
Identity = 55/178 (30.90%), Postives = 98/178 (55.06%), Query Frame = 0

Query:    7 EDATLPFISGIILAVIFFLLFINSRNKIMLYLAIGITLLAGGIFACEQLVVTDREEVAMIVSDLADQVQNNNVQGVVKRLSPKYQETIRRAEAEMPNYHFSMCRLSGVPRFK-DDRTNPNKKIVSFVV----NFRASSKRIKE-KIPGQRKVTLTFERDAAGEWKVTDYSHSDPRENV 178
              A L F++  + A++ F+ +I +  K +LYL   + +L  G+   E+  ++DRE +   +  +A +++ N+   V   + PK  +   +AEAE+P Y FS CR++ +   K +   +P K  V F +    +FR+ +  + E KIP  R + L+ E+D  G+WKVTDY H+ P + +
Sbjct:    9 NPALLVFLAAFV-ALVVFVAWIKTGRKEVLYLLGMVIVLDVGLVMYERFTISDREAIQATLLRVARELETNDRAAVYAAIHPKAVDQRMQAEAELPKYTFSECRITKIHETKVEGNQSPKKATVEFNIIASGSFRSGADVLGETKIP--RFIRLSLEQDTDGQWKVTDYYHASPEQAI 183

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig100408.104.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig100408.104.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A517Y623_9BACT	2.810e-15	30.90	Uncharacterized protein n=1 Tax=Anatilimnocola agg...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 29..34
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 58..180
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..28
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 35..57
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..11
None	No IPR available	TMHMM	TMhelix		coord: 10..28
None	No IPR available	TMHMM	TMhelix		coord: 35..57

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig100408	contig	P-canaliculata_contig100408:243..785 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig100408.104.1	mRNA_P-canaliculata_contig100408.104.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig100408 243..785 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig100408.104.1 ID=prot_P-canaliculata_contig100408.104.1|Name=mRNA_P-canaliculata_contig100408.104.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=181bp
MPSWFSEDATLPFISGIILAVIFFLLFINSRNKIMLYLAIGITLLAGGIF
ACEQLVVTDREEVAMIVSDLADQVQNNNVQGVVKRLSPKYQETIRRAEAE
MPNYHFSMCRLSGVPRFKDDRTNPNKKIVSFVVNFRASSKRIKEKIPGQR
KVTLTFERDAAGEWKVTDYSHSDPRENVRL*