mRNA_P-canaliculata_contig100396.100.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100396.100.1
Unique NamemRNA_P-canaliculata_contig100396.100.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100396.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100396contigP-canaliculata_contig100396:2..589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size588
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100396.100.1prot_P-canaliculata_contig100396.100.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100396 75..506 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.368519-UTR-P-canaliculata_contig100396:1..741622815577.368519-UTR-P-canaliculata_contig100396:1..74Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100396 2..74 +
1693494147.0602007-UTR-P-canaliculata_contig100396:1..741693494147.0602007-UTR-P-canaliculata_contig100396:1..74Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100396 2..74 +
1622815577.3917415-UTR-P-canaliculata_contig100396:506..5891622815577.3917415-UTR-P-canaliculata_contig100396:506..589Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100396 507..589 +
1693494147.0813375-UTR-P-canaliculata_contig100396:506..5891693494147.0813375-UTR-P-canaliculata_contig100396:506..589Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100396 507..589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.3808954-CDS-P-canaliculata_contig100396:74..5061622815577.3808954-CDS-P-canaliculata_contig100396:74..506Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100396 75..506 +
1693494147.0707028-CDS-P-canaliculata_contig100396:74..5061693494147.0707028-CDS-P-canaliculata_contig100396:74..506Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100396 75..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100396.100.1

>prot_P-canaliculata_contig100396.100.1 ID=prot_P-canaliculata_contig100396.100.1|Name=mRNA_P-canaliculata_contig100396.100.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=144bp
MLYITPLAISRVNIALDDWDAGYQSGSCSDESSVDTEVEDTEPAPRRSSS
VVQDVEVTDVTPAPTRSAGAAGAAGAAGATGAAGATGAADAAGAAAAKAR
QPTIARFFTSKEAPTPQQPRAKEKRAEQRQRDVAAALANPTAP*
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mRNA from alignment at P-canaliculata_contig100396:2..589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100396.100.1 ID=mRNA_P-canaliculata_contig100396.100.1|Name=mRNA_P-canaliculata_contig100396.100.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=588bp|location=Sequence derived from alignment at P-canaliculata_contig100396:2..589+ (Pelvetia canaliculata dioecious)
GCCTGCTCCACCTAAGCCCAGCACATCATCACCTCTCCCGTGTGAGACCC
AGCCTAGCCAGAGACATTCCATTATGCTGTATATCACACCTTTGGCAATA
TCAAGGGTCAATATTGCTTTGGATGATTGGGATGCCGGATACCAGTCTGG
CTCGTGCTCCGATGAGTCTTCTGTTGATACTGAGGTTGAGGACACCGAGC
CAGCACCAAGACGATCATCTTCTGTTGTTCAGGACGTAGAAGTCACAGAC
GTCACCCCGGCACCAACACGCTCAGCTGGTGCTGCTGGTGCTGCTGGTGC
TGCTGGTGCTACTGGTGCTGCTGGTGCTACTGGTGCTGCTGATGCTGCTG
GGGCTGCAGCAGCGAAGGCCCGTCAACCAACTATAGCGAGATTCTTCACT
TCAAAGGAAGCTCCCACCCCTCAGCAGCCGCGGGCGAAGGAGAAGAGAGC
GGAACAGCGGCAGAGAGATGTGGCTGCTGCTCTTGCCAACCCCACCGCGC
CATAGACAAGGTCAGGGTTGTGCGAAGCCACGCGAATGTGAGAGCTGCAC
GGCACCGCGCCGCCGAAGAGGAAGAGGAGGAGGAGGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100396:2..589+

>mRNA_P-canaliculata_contig100396.100.1 ID=mRNA_P-canaliculata_contig100396.100.1|Name=mRNA_P-canaliculata_contig100396.100.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at P-canaliculata_contig100396:2..589+ (Pelvetia canaliculata dioecious)
ATGCTGTATATCACACCTTTGGCAATATCAAGGGTCAATATTGCTTTGGA
TGATTGGGATGCCGGATACCAGTCTGGCTCGTGCTCCGATGAGTCTTCTG
TTGATACTGAGGTTGAGGACACCGAGCCAGCACCAAGACGATCATCTTCT
GTTGTTCAGGACGTAGAAGTCACAGACGTCACCCCGGCACCAACACGCTC
AGCTGGTGCTGCTGGTGCTGCTGGTGCTGCTGGTGCTACTGGTGCTGCTG
GTGCTACTGGTGCTGCTGATGCTGCTGGGGCTGCAGCAGCGAAGGCCCGT
CAACCAACTATAGCGAGATTCTTCACTTCAAAGGAAGCTCCCACCCCTCA
GCAGCCGCGGGCGAAGGAGAAGAGAGCGGAACAGCGGCAGAGAGATGTGG
CTGCTGCTCTTGCCAACCCCACCGCGCCATAGATGCTGTATATCACACCT
TTGGCAATATCAAGGGTCAATATTGCTTTGGATGATTGGGATGCCGGATA
CCAGTCTGGCTCGTGCTCCGATGAGTCTTCTGTTGATACTGAGGTTGAGG
ACACCGAGCCAGCACCAAGACGATCATCTTCTGTTGTTCAGGACGTAGAA
GTCACAGACGTCACCCCGGCACCAACACGCTCAGCTGGTGCTGCTGGTGC
TGCTGGTGCTGCTGGTGCTACTGGTGCTGCTGGTGCTACTGGTGCTGCTG
ATGCTGCTGGGGCTGCAGCAGCGAAGGCCCGTCAACCAACTATAGCGAGA
TTCTTCACTTCAAAGGAAGCTCCCACCCCTCAGCAGCCGCGGGCGAAGGA
GAAGAGAGCGGAACAGCGGCAGAGAGATGTGGCTGCTGCTCTTGCCAACC
CCACCGCGCCATAG
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