mRNA_P-canaliculata_contig100356.95.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100356.95.1
Unique NamemRNA_P-canaliculata_contig100356.95.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig100356.95.1 vs. uniprot
Match: UPI0016765D31 ((2Fe-2S)-binding protein n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI0016765D31)

HSP 1 Score: 109 bits (272), Expect = 3.690e-30
Identity = 52/63 (82.54%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 MIHCICNNINTAKVDAAAANGAETAACVQRACGTRFNCGQCRVDIQSRLQAWRIANPALEAAE 189
            MIHCICNNINTAKVDAAAA GAETAACVQ+ACGTRFNCGQCRVDI +RL++ R  NP L+AAE
Sbjct:    1 MIHCICNNINTAKVDAAAAQGAETAACVQKACGTRFNCGQCRVDIDARLRSLRALNPILQAAE 63
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BLAST of mRNA_P-canaliculata_contig100356.95.1 vs. uniprot
Match: UPI00167B3EB6 ((2Fe-2S)-binding protein n=1 Tax=Algimonas arctica TaxID=1479486 RepID=UPI00167B3EB6)

HSP 1 Score: 100 bits (248), Expect = 1.700e-26
Identity = 46/63 (73.02%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 MIHCICNNINTAKVDAAAANGAETAACVQRACGTRFNCGQCRVDIQSRLQAWRIANPALEAAE 189
            MIHCICNNINT  V+AAAA GAETAACVQRACG+RF CGQCR DI+  L++WR   P L+AAE
Sbjct:    1 MIHCICNNINTKAVEAAAAKGAETAACVQRACGSRFRCGQCRTDIEQHLRSWRQTRPMLDAAE 63
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BLAST of mRNA_P-canaliculata_contig100356.95.1 vs. uniprot
Match: UPI00041620B7 ((2Fe-2S)-binding protein n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI00041620B7)

HSP 1 Score: 98.6 bits (244), Expect = 1.230e-25
Identity = 46/63 (73.02%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 MIHCICNNINTAKVDAAAANGAETAACVQRACGTRFNCGQCRVDIQSRLQAWRIANPALEAAE 189
            MIHC+CNNINTAKVD AA+ GAE A  V R CGT+FNCGQCRV I +RL+ WR  NPALEAAE
Sbjct:   22 MIHCLCNNINTAKVDIAASQGAERAKDVMRVCGTKFNCGQCRVSINARLEEWRAINPALEAAE 84
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BLAST of mRNA_P-canaliculata_contig100356.95.1 vs. uniprot
Match: A0A520XME1_9ACTN ((2Fe-2S)-binding protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XME1_9ACTN)

HSP 1 Score: 60.1 bits (144), Expect = 1.200e-10
Identity = 35/63 (55.56%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 MIHCICNNINTAKVDAAAANGAETAACVQRACGTRFNCGQCRVDIQSRLQAWRIANPALEAAE 189
            MIHC+CN INT KVD AAA GA    CVQ   G +FNCG+C   I+ RL A       LEAAE
Sbjct:    1 MIHCLCNQINTKKVDEAAACGARRPKCVQAHFGHKFNCGKCAQSIRERL-AEISGVDYLEAAE 62
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BLAST of mRNA_P-canaliculata_contig100356.95.1 vs. uniprot
Match: UPI0018F02B14 (hypothetical protein n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI0018F02B14)

HSP 1 Score: 53.5 bits (127), Expect = 6.040e-8
Identity = 29/49 (59.18%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 MIHCICNNINTAKVDAAAANGAETAACVQRACGTRFNCGQCRVDIQSRL 147
            MIHC+CNNINTAKVD AA  GA     V    G  FNCGQC+  I  RL
Sbjct:    1 MIHCVCNNINTAKVDEAAHAGACRPKDVLAHHGKAFNCGQCKGSIAERL 49
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100356.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI0016765D313.690e-3082.54(2Fe-2S)-binding protein n=1 Tax=Litorimonas clado... [more]
UPI00167B3EB61.700e-2673.02(2Fe-2S)-binding protein n=1 Tax=Algimonas arctica... [more]
UPI00041620B71.230e-2573.02(2Fe-2S)-binding protein n=1 Tax=Hellea balneolens... [more]
A0A520XME1_9ACTN1.200e-1055.56(2Fe-2S)-binding protein n=1 Tax=Acidimicrobiales ... [more]
UPI0018F02B146.040e-859.18hypothetical protein n=1 Tax=Robiginitomaculum ant... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100356contigP-canaliculata_contig100356:564..755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.969576-CDS-P-canaliculata_contig100356:563..7551622815576.969576-CDS-P-canaliculata_contig100356:563..755Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100356 564..755 +
1693494146.8117127-CDS-P-canaliculata_contig100356:563..7551693494146.8117127-CDS-P-canaliculata_contig100356:563..755Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100356 564..755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100356.95.1prot_P-canaliculata_contig100356.95.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100356 564..755 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100356.95.1

>prot_P-canaliculata_contig100356.95.1 ID=prot_P-canaliculata_contig100356.95.1|Name=mRNA_P-canaliculata_contig100356.95.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=64bp
MIHCICNNINTAKVDAAAANGAETAACVQRACGTRFNCGQCRVDIQSRLQ
AWRIANPALEAAE*
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mRNA from alignment at P-canaliculata_contig100356:564..755+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100356.95.1 ID=mRNA_P-canaliculata_contig100356.95.1|Name=mRNA_P-canaliculata_contig100356.95.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at P-canaliculata_contig100356:564..755+ (Pelvetia canaliculata dioecious)
ATGATCCATTGTATCTGCAACAATATCAATACGGCCAAAGTTGACGCCGC
CGCCGCCAATGGGGCGGAAACCGCCGCCTGCGTCCAGCGGGCTTGCGGCA
CGCGGTTTAACTGCGGGCAGTGCCGCGTCGATATACAATCGCGTTTGCAG
GCTTGGCGGATCGCCAACCCGGCTCTGGAAGCGGCGGAATAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig100356:564..755+

>mRNA_P-canaliculata_contig100356.95.1 ID=mRNA_P-canaliculata_contig100356.95.1|Name=mRNA_P-canaliculata_contig100356.95.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at P-canaliculata_contig100356:564..755+ (Pelvetia canaliculata dioecious)
ATGATCCATTGTATCTGCAACAATATCAATACGGCCAAAGTTGACGCCGC
CGCCGCCAATGGGGCGGAAACCGCCGCCTGCGTCCAGCGGGCTTGCGGCA
CGCGGTTTAACTGCGGGCAGTGCCGCGTCGATATACAATCGCGTTTGCAG
GCTTGGCGGATCGCCAACCCGGCTCTGGAAGCGGCGGAATAAATGATCCA
TTGTATCTGCAACAATATCAATACGGCCAAAGTTGACGCCGCCGCCGCCA
ATGGGGCGGAAACCGCCGCCTGCGTCCAGCGGGCTTGCGGCACGCGGTTT
AACTGCGGGCAGTGCCGCGTCGATATACAATCGCGTTTGCAGGCTTGGCG
GATCGCCAACCCGGCTCTGGAAGCGGCGGAATAA
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