mRNA_P-canaliculata_contig100344.93.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100344.93.1
Unique NamemRNA_P-canaliculata_contig100344.93.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.430e-11
Identity = 41/86 (47.67%), Postives = 50/86 (58.14%), Query Frame = 2 
Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIECI-RTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        +ADY T       CI RTD  GEF+G+F     R  I  E TPP TP+YNGVAERALGL+ + A+
Sbjct:   52 RWTRVFFLKHKSDAAVGFEKFLADYRTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLITDAAL 137
[Close]
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KKB4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB4_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.740e-11
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 2 
Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIEC----IRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD  A     +ADY   +  ++ C     RTD  GEF+G+F     R  I  E TPP+TP+YNGVAERALGLL + A+
Sbjct:   21 RWTRVFFLKHKSDAAAAFEPYLADY---RAETVPCEVFVARTDGGGEFQGQFAEVCRRYGIKQEFTPPNTPKYNGVAERALGLLADSAL 106
[Close]
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 3.890e-11
Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 2 
Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIEC----IRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD  A     +ADY   +  ++ C     RTD  GEF+G+F     R  I  E TPP+TP+YNGVAERALGLL + A+
Sbjct:  225 RWTRVFFLKHKSDAAAAFEQYLADY---RAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLLADSAL 310
[Close]
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 6.440e-11
Identity = 38/86 (44.19%), Postives = 49/86 (56.98%), Query Frame = 2 
Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQ-KLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        + DY T +    +   RTDD GEF+G+F     R  I  E TPP TP+YN VAERALGL+ + A+
Sbjct:  246 RWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGLITDAAL 331
[Close]
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.980e-10
Identity = 38/86 (44.19%), Postives = 48/86 (55.81%), Query Frame = 2 
Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITP-QKLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        +ADY T      +   RTD  GEF+G+F     R  I  E TPP T +YNGVAERALGL+ + A+
Sbjct:  225 RWTRDFFLKHKSDAAVGFEKFLADYRTKGAPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTQKYNGVAERALGLITDAAL 310
[Close]
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.940e-10
Identity = 39/81 (48.15%), Postives = 46/81 (56.79%), Query Frame = 2 
Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQ-KLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLL 502
            RW +  F+K KSD    L   +ADY T      +   RTD  GEF+G+F     R  I  E TPP TP+YNGVAERALG L
Sbjct:  676 RWTRVFFLKHKSDAAVGLEKFLADYRTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGAL 756
[Close]
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5K2T3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T3_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 9.070e-10
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 2 
Query:  269 RWWK--FVKKKSDTTAPLLSLVADYIT---PQKLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +   +K KSD        +ADY T   P K+ I  +RTD  GEF+G+F        I  E TPP TP+YNGVAERALGL+ + A+
Sbjct:   52 RWTRAFLLKHKSDAAVGFEKFLADYRTKGVPCKVYI--VRTDGGGEFQGQFAEVCRTHGIKQEFTPPHTPKYNGVAERALGLITDAAL 137
[Close]
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.350e-9
Identity = 40/89 (44.94%), Postives = 49/89 (55.06%), Query Frame = 2 
Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIEC----IRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        +ADY T     I C     RTD  GEF+G+F     R  I  E TPP TP+YN VAERALGL+ + A+
Sbjct:  222 RWTRGFFLKHKSDAAIGFEKFLADYRTK---GIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTPKYNSVAERALGLITDAAL 307
[Close]
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.500e-9
Identity = 39/86 (45.35%), Postives = 49/86 (56.98%), Query Frame = 2 
Query:  269 RWWK--FVKKKSDTTAPLLSLVADYITPQKLSIECI-RTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        +ADY T      + I R D  GEF+G+F     R  I  E TPP TP+YNGVAERALGL+ + A+
Sbjct:  731 RWTRVFFLKHKSDAAVGFEKFLADYRTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLITDAAL 816
[Close]
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.910e-8
Identity = 40/88 (45.45%), Postives = 49/88 (55.68%), Query Frame = 2 
Query:  269 RWWK--FVKKKSDTTAPLLSLVADYIT---PQKLSIECIRTDDRGEFEGEFQRELDRRSITHEHTPPDTPQYNGVAERALGLLREKAI 517
            RW +  F+K KSD        +ADY T   P K+ I   RTD  GEF+G+F     R  I  E TPP TP Y  VAERALGL+ + A+
Sbjct:  512 RWTRVFFLKHKSDAAVGFEKFLADYRTEGVPCKVYIA--RTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERALGLITDAAL 597
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100344.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAM7_9PHAE3.430e-1147.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKB4_9PHAE3.740e-1146.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LL52_9PHAE3.890e-1146.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGJ8_9PHAE6.440e-1144.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZ88_9PHAE4.980e-1044.19Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5JM30_9PHAE5.940e-1048.15Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K2T3_9PHAE9.070e-1045.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L1A7_9PHAE1.350e-944.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAQ2_9PHAE1.500e-945.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPZ8_9PHAE2.910e-845.45Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100344contigP-canaliculata_contig100344:451..992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue1.5e-11
Seed eggNOG ortholog159749.K0QZP2
EggNOG free text desc.PIF1-like helicase
EggNOG OGs2XG4E@2836,COG0507@1,COG2801@1,KOG0017@2759,KOG0987@2759
COG Functional cat.L
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size542
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100344.93.1prot_P-canaliculata_contig100344.93.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100344 463..750 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.8649297-UTR-P-canaliculata_contig100344:450..4621622815576.8649297-UTR-P-canaliculata_contig100344:450..462Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100344 451..462 +
1693494146.7173104-UTR-P-canaliculata_contig100344:450..4621693494146.7173104-UTR-P-canaliculata_contig100344:450..462Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100344 451..462 +
1622815576.8888586-UTR-P-canaliculata_contig100344:750..9921622815576.8888586-UTR-P-canaliculata_contig100344:750..992Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100344 751..992 +
1693494146.7564473-UTR-P-canaliculata_contig100344:750..9921693494146.7564473-UTR-P-canaliculata_contig100344:750..992Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100344 751..992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.877901-CDS-P-canaliculata_contig100344:462..7501622815576.877901-CDS-P-canaliculata_contig100344:462..750Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100344 463..750 +
1693494146.7450235-CDS-P-canaliculata_contig100344:462..7501693494146.7450235-CDS-P-canaliculata_contig100344:462..750Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100344 463..750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100344.93.1

>prot_P-canaliculata_contig100344.93.1 ID=prot_P-canaliculata_contig100344.93.1|Name=mRNA_P-canaliculata_contig100344.93.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=96bp
MLAHPSEVITRKTAAVMGIETTGQWGACETCFQVKAKRHAVPKKTDERAS
VKGQRFFVDVGGPMKHSSLGGSNYVVIFVDDCTRFKVVEVREEEK*
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mRNA from alignment at P-canaliculata_contig100344:451..992+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100344.93.1 ID=mRNA_P-canaliculata_contig100344.93.1|Name=mRNA_P-canaliculata_contig100344.93.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=542bp|location=Sequence derived from alignment at P-canaliculata_contig100344:451..992+ (Pelvetia canaliculata dioecious)
GAAGTCCACCGCATGCTTGCGCACCCGAGCGAAGTCATCACCAGAAAGAC
GGCTGCTGTGATGGGGATCGAGACGACGGGCCAGTGGGGGGCGTGCGAGA
CGTGCTTCCAGGTCAAAGCAAAGCGACACGCCGTCCCCAAGAAGACAGAC
GAACGGGCGAGCGTGAAAGGACAGCGATTTTTCGTCGACGTGGGCGGGCC
GATGAAACACTCGAGTCTAGGCGGGAGCAATTACGTCGTCATTTTTGTGG
ACGACTGCACCCGCTTTAAGGTGGTGGAAGTTCGTGAAGAAGAAAAGTGA
CACAACGGCCCCTCTCTTGTCTCTGGTTGCAGACTATATCACACCGCAGA
AGCTGTCGATCGAGTGCATACGGACGGACGATCGTGGCGAGTTTGAGGGA
GAATTTCAACGCGAACTGGACCGGCGCAGCATCACGCACGAGCATACCCC
GCCGGACACGCCGCAGTACAATGGGGTGGCCGAACGTGCGCTTGGACTTT
TGAGAGAAAAGGCGATCATCCTGATGGAGGAGCTAGACGACG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100344:451..992+

>mRNA_P-canaliculata_contig100344.93.1 ID=mRNA_P-canaliculata_contig100344.93.1|Name=mRNA_P-canaliculata_contig100344.93.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at P-canaliculata_contig100344:451..992+ (Pelvetia canaliculata dioecious)
ATGCTTGCGCACCCGAGCGAAGTCATCACCAGAAAGACGGCTGCTGTGAT
GGGGATCGAGACGACGGGCCAGTGGGGGGCGTGCGAGACGTGCTTCCAGG
TCAAAGCAAAGCGACACGCCGTCCCCAAGAAGACAGACGAACGGGCGAGC
GTGAAAGGACAGCGATTTTTCGTCGACGTGGGCGGGCCGATGAAACACTC
GAGTCTAGGCGGGAGCAATTACGTCGTCATTTTTGTGGACGACTGCACCC
GCTTTAAGGTGGTGGAAGTTCGTGAAGAAGAAAAGTGAATGCTTGCGCAC
CCGAGCGAAGTCATCACCAGAAAGACGGCTGCTGTGATGGGGATCGAGAC
GACGGGCCAGTGGGGGGCGTGCGAGACGTGCTTCCAGGTCAAAGCAAAGC
GACACGCCGTCCCCAAGAAGACAGACGAACGGGCGAGCGTGAAAGGACAG
CGATTTTTCGTCGACGTGGGCGGGCCGATGAAACACTCGAGTCTAGGCGG
GAGCAATTACGTCGTCATTTTTGTGGACGACTGCACCCGCTTTAAGGTGG
TGGAAGTTCGTGAAGAAGAAAAGTGA
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