mRNA_P-canaliculata_contig10034.92.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10034.92.1
Unique NamemRNA_P-canaliculata_contig10034.92.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10034.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10034contigP-canaliculata_contig10034:7910..11335 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-07_000160.1
Exons3
Model size387
Cds size387
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10034.92.1prot_P-canaliculata_contig10034.92.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10034 7910..11335 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.7842727-CDS-P-canaliculata_contig10034:7909..80801622815576.7842727-CDS-P-canaliculata_contig10034:7909..8080Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10034 7910..8080 -
1693494146.6724982-CDS-P-canaliculata_contig10034:7909..80801693494146.6724982-CDS-P-canaliculata_contig10034:7909..8080Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10034 7910..8080 -
1622815576.8050337-CDS-P-canaliculata_contig10034:10100..102081622815576.8050337-CDS-P-canaliculata_contig10034:10100..10208Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10034 10101..10208 -
1693494146.6899395-CDS-P-canaliculata_contig10034:10100..102081693494146.6899395-CDS-P-canaliculata_contig10034:10100..10208Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10034 10101..10208 -
1622815576.8178182-CDS-P-canaliculata_contig10034:11227..113351622815576.8178182-CDS-P-canaliculata_contig10034:11227..11335Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10034 11228..11335 -
1693494146.7025642-CDS-P-canaliculata_contig10034:11227..113351693494146.7025642-CDS-P-canaliculata_contig10034:11227..11335Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10034 11228..11335 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10034.92.1

>prot_P-canaliculata_contig10034.92.1 ID=prot_P-canaliculata_contig10034.92.1|Name=mRNA_P-canaliculata_contig10034.92.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=129bp
VSRKCQVEGGGCNRQPVYGWPGERATRCGTHKLQRTLTELATGNAEVEKM
HDVRGKRCQAEGCIRQPGFGDPLKDRGSVRCNEHKLPGMTNVRKRRAMER
LTKVTNLNAPYPQQHRNHSQAEILHSQRQ
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mRNA from alignment at P-canaliculata_contig10034:7910..11335-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10034.92.1 ID=mRNA_P-canaliculata_contig10034.92.1|Name=mRNA_P-canaliculata_contig10034.92.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3426bp|location=Sequence derived from alignment at P-canaliculata_contig10034:7910..11335- (Pelvetia canaliculata dioecious)
GTCAGTCGGAAGTGCCAGGTCGAAGGGGGCGGGTGTAATCGTCAACCTGT
CTACGGCTGGCCAGGGGAGCGTGCCACGCGATGCGGCACCCACAAGCTAC
AACGTACGGTGAGAGCTTTTTTTTTCTTTTTCTGTAGTACTAGTATATAC
ACCTTGTACACTTATGCCCGGTCGCTTTTGTCATCGAAAAAAACATACCG
GTACATACAGCAGAGGATATACTCTACTATGTCGGTGCAGTTCTTGTCGG
GGGAGGCGGGGACTTTGAGGCATGTGGTACTGTATACAGTACTCTAGTAT
CAACTCTTGACATGTGGTAGTGTATACAGTACTGTAGTAACAACTCTTGA
CATGTGGTAGTGTATACAGTATTTATGTCTGCATGGTCAGCACATTGAAC
AGAGTATGTATCAACCGGGTGTGGTTGCCAATCCTGCTTGCGGTCAGCTT
AACAGGAAAAATATATTTCCCCTCTCCCCGTTCGCGCCTGAGAATTTGGT
CAGTTAAGTAAACAGTAGAGTAGGCCGTATAGTTATACAGTAGTATAGCT
ATAATGCACAGTATAGCAACGATAATGCCTTCAGGGGCATCGCTTTCTGG
AGGGGACGATAAAGGCGTGGAGAGATTCTTCCTAAATTCCTCGTCTCTCT
ACCGATCGAAATAAGGGGCAAGCTCCATTGGTAGCTCCAAAGATTCTTCT
CATGTCCCCGCTACGAATCGAGTGCCACATCCTTTCTCCTCTTTTCTCCT
TACAGAATTGATGCAAGGACGAATACTAATTTAATTTTAACGTGTTAAAA
TAGCGTCGCAGGCAGCGCTAGATAAATGCGTTGAAAGCGGCGTCCACACA
TTTACCTGATAATGGCCATGTTTTGCAGTTTCGTAAGATGTCTCTTCCAT
TTCTTGTGTTGTTAGGACTTGCTTGGCGCTGTCTTGAACCCTACTTAAAG
CCTGACCGAATCCCAACAGCCGACCCGAGTCAAAACTACTAACCGGATGC
AAAATACCGAACGGAATATCAAGTACCCGACCAAGTTATTGAAACCGGTT
CAAACAACAGGAAACCTTACCAAACCTGAAAGCCGAACCGAAAACCAACT
CGATCGCAAACGGAATTGGTCCCATAGTTGACAGAGCTGGCTACAGGGAA
CGCCGAAGTGGAGAAAATGCACGATGTCCGAGGAAAGCGTTGCCAAGCGG
AAGGTTGCATTCGACAGCCTGGCTTTGGGGATCCGGTAAGCCCCATTGCA
GCTATGGCGTGCAAGTAATCGTTTGTGCACTCGTCTTTCGTCTTGGCACT
TTGAACCTGCTGTGCTATTTAATACTGCTGAGAGCTGAAGGTCCTTCTCG
GTCCTTTGTCGTTTTTGTGGCGTTTGAAGGTGCAGGTGCGCTGGGCTTGT
TGTAAGCTGCCTTCCTTGTGACGTCTGACGTAGAAAACATCTTATCTCAA
ACGAGAATGGGAGGATGGCGTGGGTCTTTTAGTCGTTGTATTGTTTTGCT
TTGTTCGCTTGTTTGTTACTGGTAGTCATCGAGTACAGCGCCCCGTAGTG
TGTCCTTCATGTTTTCCCCGTTTTTTTTTCAAGTTTTTTTGTCTCTCTCC
TTCTGCCCCCATAGGTTAGTCTAGTATTAATACTACTACTATTAATATAC
CAACACCCGTACCAACACCGACGCCAATAGTGTACTTCACGTCCAGTCAC
AGCCCGGAAATATAACGTAGCCAATAGTGTACTTCACATTACACCAATAC
CACCTGGGGATGTGTTGGTCGTGCCCACCCCCAATTTACCTGAAATTGTT
ACTGCACCGACATTCACAGATAGCCACCCGTAGCTCTATAGTATTCGGTA
AAGTTGTATTTGTACCTAGTATCTTTGATATCCAGTCCCGCGTACGTGAG
ACCGTCGCCTCTAGATACGCCACGCTTGGAGAAAGTTTTTCAATCTCGTT
GTTAGGGATGTAGGATTAAGCGAGTTTGCATCTTGACAGAGGTAGCTGGA
GCGTTACCTCTTTGTCTTCGTCATACTAATAATATACAGGGTACGTAGCT
CTAGTGCTCTAGTGCTCTAGTGCTCTATGCTGTATGCCGATATTTTAAAC
ATGCTCACTTCATACCGAAGTGGGTGTGGGAAAGTAGAGTCGCACATTAA
TTGGTGCATGGCGATGCAAAGACAGCACCCTGAGGACTACCGGCCCTCTG
CCGGCGGACTCTCGGCAGTGAACACCATCGGTACACAGTTGCGCGACCCG
ATGAACTCGGGATTGAGCCGATGGGATATGGCGGTTTAAATAAAGAAATG
GCCGCCGCCGCGGAAATCGGGAGGAACCCCGTGAGTAAGCACCAGATTGA
GCCTGAGTATGGAGAACGGGCAGGCTGACGCGGGACGGTACGGCCGAAGT
TGTCTCGCGAGACTAAATTCTTAGACTCGAACGGGGACAGAAAGATTCAT
TTTCCCTATTCAGCTGACCATGAGCTGGATTGGCAGCCTTACCAGGTCGA
TCCGTACTCTGCTACATATGATGACCATATATGCTGTTTAATGTATAGAT
TGGGGAGGATTTCTCCCACAAGGCATTTAATACTCTATAGTTTACTGTAT
TCGCGGGCCATTAGGGTACTTTTTGATATGGTGCTCTAAAATACAAGGGT
CAAGTGAAATAGCCTAGAGAAACCCGCCCAGCAAGAGAGAAAATATTATA
TTGCCTTTCCTTTTATCCCTTTCGCGTCTTGCTTTTCGTTTGTACAGACT
GCAACAAGTCACTAATTTTGGAAATGTGTGGGTTAGTATACGTATTGATG
TGTTACAATCGTCCCACCAACTATCCGCAACCGTTTTATAAAGTTTCATG
GTGTGAACGTTGAGGTCATAAAATAGTCTACCAAAGGATACTGGCACGGT
ACAGTATCATCGTTACATAGCCATCAGATTCTTGCCTCTATCTGTAGGAA
TCAGCGTTGATAAGGAGTACGTACGGTATTTGTATATGACTACCCTTTTT
TGAGAAAAAATATTTTTGTTATAGCTGATCACAGTAGAACGTCTGGCTAT
TTTAAGCTTGGGTTTGACGACGAAGACTATGTTACCGCTTACCGCTTTCA
GCGTTGGACATGGTGCCTTTTTTTCTACTGGCAATGTTTTAGACCACCCC
TCCCCTCCATTTCACCCTCTCTTTTCACTGCCTCGCTGTGCTCTTGTGTA
CTGTTCTATATTGCCCTGTACTTCACTGACTGTCGTACTTGATACAATTA
TGCAGCTGAAGGACAGGGGGTCGGTGAGGTGTAACGAGCACAAGCTACCG
GGGATGACCAACGTTCGAAAGCGCCGCGCCATGGAACGCCTCACCAAGGT
TACTAACCTCAACGCTCCCTACCCTCAGCAGCATCGCAACCACTCCCAGG
CGGAGATCCTCCATAGCCAGCGCCAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10034:7910..11335-

>mRNA_P-canaliculata_contig10034.92.1 ID=mRNA_P-canaliculata_contig10034.92.1|Name=mRNA_P-canaliculata_contig10034.92.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at P-canaliculata_contig10034:7910..11335- (Pelvetia canaliculata dioecious)
GTCAGTCGGAAGTGCCAGGTCGAAGGGGGCGGGTGTAATCGTCAACCTGT
CTACGGCTGGCCAGGGGAGCGTGCCACGCGATGCGGCACCCACAAGCTAC
AACGTACGGTCAGTCGGAAGTGCCAGGTCGAAGGGGGCGGGTGTAATCGT
CAACCTGTCTACGGCTGGCCAGGGGAGCGTGCCACGCGATGCGGCACCCA
CAAGCTACAACGTACGTTGACAGAGCTGGCTACAGGGAACGCCGAAGTGG
AGAAAATGCACGATGTCCGAGGAAAGCGTTGCCAAGCGGAAGGTTGCATT
CGACAGCCTGGCTTTGGGGATCCGTTGACAGAGCTGGCTACAGGGAACGC
CGAAGTGGAGAAAATGCACGATGTCCGAGGAAAGCGTTGCCAAGCGGAAG
GTTGCATTCGACAGCCTGGCTTTGGGGATCCGCTGAAGGACAGGGGGTCG
GTGAGGTGTAACGAGCACAAGCTACCGGGGATGACCAACGTTCGAAAGCG
CCGCGCCATGGAACGCCTCACCAAGGTTACTAACCTCAACGCTCCCTACC
CTCAGCAGCATCGCAACCACTCCCAGGCGGAGATCCTCCATAGCCAGCGC
CAGCTGAAGGACAGGGGGTCGGTGAGGTGTAACGAGCACAAGCTACCGGG
GATGACCAACGTTCGAAAGCGCCGCGCCATGGAACGCCTCACCAAGGTTA
CTAACCTCAACGCTCCCTACCCTCAGCAGCATCGCAACCACTCCCAGGCG
GAGATCCTCCATAGCCAGCGCCAG
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