mRNA_P-canaliculata_contig10030.90.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10030.90.1
Unique NamemRNA_P-canaliculata_contig10030.90.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10030.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10030contigP-canaliculata_contig10030:4488..6882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size2377
Cds size1446
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10030.90.1prot_P-canaliculata_contig10030.90.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10030 4488..5951 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.3809948-CDS-P-canaliculata_contig10030:4487..52101622815576.3809948-CDS-P-canaliculata_contig10030:4487..5210Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10030 4488..5210 -
1693494146.4102027-CDS-P-canaliculata_contig10030:4487..52101693494146.4102027-CDS-P-canaliculata_contig10030:4487..5210Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10030 4488..5210 -
1622815576.3942673-CDS-P-canaliculata_contig10030:5228..59511622815576.3942673-CDS-P-canaliculata_contig10030:5228..5951Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10030 5229..5951 -
1693494146.4193902-CDS-P-canaliculata_contig10030:5228..59511693494146.4193902-CDS-P-canaliculata_contig10030:5228..5951Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10030 5229..5951 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.4090738-UTR-P-canaliculata_contig10030:5951..68821622815576.4090738-UTR-P-canaliculata_contig10030:5951..6882Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10030 5952..6882 -
1693494146.4287877-UTR-P-canaliculata_contig10030:5951..68821693494146.4287877-UTR-P-canaliculata_contig10030:5951..6882Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10030 5952..6882 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10030.90.1

>prot_P-canaliculata_contig10030.90.1 ID=prot_P-canaliculata_contig10030.90.1|Name=mRNA_P-canaliculata_contig10030.90.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=482bp
MQGQYVPGGDTRRPQAPHSQQESSWGTLSSGALRGSGGSGDSTDPRPNGQ
SYAVQYLPLTYATGGGISRGGVTPPYSSRQTDNRDRAAYTSGGSITPSSP
ESATAAGAADNHGSNGSVNAGESGHHHRLSGEDPPTRGGARGGVISRVAA
GSGAAASRRSFLAGSGFGSLSGQSTSSSSGVAGRALNGRGGRGRGGSSRG
RSNLPRRSQNFGSSGRGRGRQNFGDTRRSTAPRGRGVSGMWPQPARVSNT
GALTSPAASGGEVGDQLRYSGWWGDDLRSGRETDQNESVAVGGYMGGGWN
RVRSAVGTLDRDGMEAGDEDDVEGEEEEEEGEEEEEGEEENDGAEESDSS
GSSSSGDDDDESLEDGEAVEENMNMRDARRNNRNNAQKASESVGAKRRRD
DASPPPSRNGTQKYMATDSGRGAGGGGGELSSRARDPRAFRAAATTAARE
RRPERAASEDSDRERSRSPSVGRVHESPPRPA
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mRNA from alignment at P-canaliculata_contig10030:4488..6882-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10030.90.1 ID=mRNA_P-canaliculata_contig10030.90.1|Name=mRNA_P-canaliculata_contig10030.90.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=2395bp|location=Sequence derived from alignment at P-canaliculata_contig10030:4488..6882- (Pelvetia canaliculata dioecious)
ATTTCCCCACTGCCAGAACCACGGTCACCCAGTTTGGCGCGTAGCCCTCA
TCGCTCGAAGCTTTCCCGTGGCCTAGATCTCAGCGTTCGTCTCTGCGCTC
AGGTTTTGTGATCATTCTGAATCAAGTGGGGTTGTTCATCTTGACGAGGG
TAAACTCTTTGGGAACTTGTGTGACGCGTGGCGAGTAAGACAACGAAGAC
GGGGGTGGGGAAAACTGTTGGGGCGAGTCGAGTCGCTAGGGCCCCCGAAC
AGCAGCTGGGCGGAGCAACGGGTAGGCATAGAGAGACGAATACCACTCGC
ACTGACTTGAGGCAGCGAATCAGCAAGTTTTTTCGCAGCTGCCTCGATCA
CCCCTCACTCGGCTTGTCTCGTGTCTCGTGAAAACGCACGTTTTCGGTGG
TACTGACTTGATCCCTGACACCATCAGTAGAAGGGTCTCGGTGGTAATCT
CGAGGGCTTGTGAGCGACCAAATGTCGATCGCGACCCTCTAGAAGAAGCG
CTGGCCACATTTCCTCCACGCGGGATCATTCTGTGTTGCTACTTCGCGAC
CAGAGCACGGGCGCCCAAAACGAGTCGTCCCGCTTATTTTTCCCCCCAGA
CGGCGTAAACTACTTGTCTTTTCTGGAGCACATTAACTTCTACTGGACGA
AACGACATACAGTATTGTCTGTTAGATTGATCCAAGTTTGTCTCCGTTTT
TTTGAGGGGGGGGCTCTGGTCTTGCGGAGAAAACGAGCAGAGGGAAACAG
AGGGAAACGATCAAAGCAAAGCAACTGCCCCGCCCTCTTCAGTGATTTAG
GCTGCTTCATCAGCGCTACTTCGGTCTGTAGTAGGTCATCCTAGAAGCGG
CAGCTCGAGTGATCGTATCGAACTGACCCCTCACAAGGTTTTGCGGGGTT
GCTGCGTGAAACCGCGCCTCGCCCGGCGGTCATGCAGGGGCAGTACGTCC
CGGGTGGCGATACCCGTCGCCCACAAGCGCCGCATTCCCAGCAGGAGAGT
TCGTGGGGAACCCTTTCTTCTGGGGCCTTACGCGGCAGCGGCGGCAGTGG
CGATAGTACGGACCCCAGGCCAAATGGCCAGTCATACGCCGTGCAGTACC
TCCCGCTAACATACGCCACGGGTGGCGGGATTTCGAGAGGCGGGGTAACG
CCGCCCTATAGCTCTCGGCAGACGGACAACAGGGATCGCGCGGCGTACAC
GAGCGGGGGATCAATAACCCCATCCTCCCCCGAGTCAGCCACTGCCGCCG
GCGCAGCAGATAATCATGGTAGCAATGGTAGCGTCAATGCCGGTGAGTCG
GGCCATCATCACCGATTGTCTGGCGAGGATCCCCCGACGAGAGGCGGCGC
TCGGGGAGGCGTTATCTCTCGGGTGGCGGCGGGATCGGGGGCGGCGGCAT
CTCGAAGAAGCTTCTTGGCTGGTTCGGGTTTCGGAAGTCTATCAGGCCAA
TCAACGTCGTCTTCATCGGGGGTGGCGGGGCGTGCGTTGAATGGCCGTGG
AGGCCGCGGCCGCGGCGGTAGTTCCCGCGGCCGAAGCAATTTGCCGCGCC
GCTCTCAAAATTTCGGGTCTTCTGGCCGGGGGCGGGGCCGTCAAAATTTC
GGGGATACACGGCGATCCACAGCACCACGAGGTAGGGGGGTTTCGGGGAT
GTGGGTGTCGGGTGGCAGAAAGCCGCAGCCTGCAAGGGTTTCCAACACCG
GCGCGTTGACGAGCCCCGCGGCGTCAGGCGGGGAGGTCGGGGACCAGCTC
CGCTACAGTGGTTGGTGGGGAGACGATCTCAGGTCGGGCAGGGAAACGGA
TCAGAATGAATCGGTGGCCGTTGGTGGGTACATGGGGGGAGGGTGGAATC
GGGTGAGGAGCGCTGTAGGAACACTTGACCGCGATGGAATGGAAGCGGGA
GATGAAGATGATGTGGAAGGCGAGGAAGAGGAGGAGGAGGGAGAGGAAGA
AGAAGAGGGGGAGGAAGAAAACGACGGAGCTGAGGAGTCTGACAGCAGCG
GAAGTAGTTCCAGTGGGGATGACGATGACGAGAGCCTGGAGGACGGGGAG
GCCGTGGAGGAGAACATGAACATGCGCGACGCGCGTCGCAACAATCGCAA
TAATGCCCAAAAGGCCAGCGAGAGTGTCGGCGCGAAGAGGCGCCGAGACG
ACGCCTCGCCCCCTCCTTCCCGAAACGGCACGCAGAAGTACATGGCCACG
GATAGCGGTAGAGGCGCCGGTGGCGGCGGCGGGGAATTATCTTCTAGGGC
GCGGGACCCTCGGGCGTTTCGCGCCGCCGCCACAACCGCAGCGCGCGAAA
GACGTCCAGAGCGCGCGGCGTCGGAGGATAGCGATCGAGAACGCTCGCGG
AGTCCCTCTGTGGGGCGCGTCCACGAGTCACCACCTCGCCCTGCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10030:4488..6882-

>mRNA_P-canaliculata_contig10030.90.1 ID=mRNA_P-canaliculata_contig10030.90.1|Name=mRNA_P-canaliculata_contig10030.90.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=2892bp|location=Sequence derived from alignment at P-canaliculata_contig10030:4488..6882- (Pelvetia canaliculata dioecious)
ATGCAGGGGCAGTACGTCCCGGGTGGCGATACCCGTCGCCCACAAGCGCC
GCATTCCCAGCAGGAGAGTTCGTGGGGAACCCTTTCTTCTGGGGCCTTAC
GCGGCAGCGGCGGCAGTGGCGATAGTACGGACCCCAGGCCAAATGGCCAG
TCATACGCCGTGCAGTACCTCCCGCTAACATACGCCACGGGTGGCGGGAT
TTCGAGAGGCGGGGTAACGCCGCCCTATAGCTCTCGGCAGACGGACAACA
GGGATCGCGCGGCGTACACGAGCGGGGGATCAATAACCCCATCCTCCCCC
GAGTCAGCCACTGCCGCCGGCGCAGCAGATAATCATGGTAGCAATGGTAG
CGTCAATGCCGGTGAGTCGGGCCATCATCACCGATTGTCTGGCGAGGATC
CCCCGACGAGAGGCGGCGCTCGGGGAGGCGTTATCTCTCGGGTGGCGGCG
GGATCGGGGGCGGCGGCATCTCGAAGAAGCTTCTTGGCTGGTTCGGGTTT
CGGAAGTCTATCAGGCCAATCAACGTCGTCTTCATCGGGGGTGGCGGGGC
GTGCGTTGAATGGCCGTGGAGGCCGCGGCCGCGGCGGTAGTTCCCGCGGC
CGAAGCAATTTGCCGCGCCGCTCTCAAAATTTCGGGTCTTCTGGCCGGGG
GCGGGGCCGTCAAAATTTCGGGGATACACGGCGATCCACAGCACCACGAG
GTAGGGGGGTTTCGGGGATGTGGATGCAGGGGCAGTACGTCCCGGGTGGC
GATACCCGTCGCCCACAAGCGCCGCATTCCCAGCAGGAGAGTTCGTGGGG
AACCCTTTCTTCTGGGGCCTTACGCGGCAGCGGCGGCAGTGGCGATAGTA
CGGACCCCAGGCCAAATGGCCAGTCATACGCCGTGCAGTACCTCCCGCTA
ACATACGCCACGGGTGGCGGGATTTCGAGAGGCGGGGTAACGCCGCCCTA
TAGCTCTCGGCAGACGGACAACAGGGATCGCGCGGCGTACACGAGCGGGG
GATCAATAACCCCATCCTCCCCCGAGTCAGCCACTGCCGCCGGCGCAGCA
GATAATCATGGTAGCAATGGTAGCGTCAATGCCGGTGAGTCGGGCCATCA
TCACCGATTGTCTGGCGAGGATCCCCCGACGAGAGGCGGCGCTCGGGGAG
GCGTTATCTCTCGGGTGGCGGCGGGATCGGGGGCGGCGGCATCTCGAAGA
AGCTTCTTGGCTGGTTCGGGTTTCGGAAGTCTATCAGGCCAATCAACGTC
GTCTTCATCGGGGGTGGCGGGGCGTGCGTTGAATGGCCGTGGAGGCCGCG
GCCGCGGCGGTAGTTCCCGCGGCCGAAGCAATTTGCCGCGCCGCTCTCAA
AATTTCGGGTCTTCTGGCCGGGGGCGGGGCCGTCAAAATTTCGGGGATAC
ACGGCGATCCACAGCACCACGAGGTAGGGGGGTTTCGGGGATGTGGCCGC
AGCCTGCAAGGGTTTCCAACACCGGCGCGTTGACGAGCCCCGCGGCGTCA
GGCGGGGAGGTCGGGGACCAGCTCCGCTACAGTGGTTGGTGGGGAGACGA
TCTCAGGTCGGGCAGGGAAACGGATCAGAATGAATCGGTGGCCGTTGGTG
GGTACATGGGGGGAGGGTGGAATCGGGTGAGGAGCGCTGTAGGAACACTT
GACCGCGATGGAATGGAAGCGGGAGATGAAGATGATGTGGAAGGCGAGGA
AGAGGAGGAGGAGGGAGAGGAAGAAGAAGAGGGGGAGGAAGAAAACGACG
GAGCTGAGGAGTCTGACAGCAGCGGAAGTAGTTCCAGTGGGGATGACGAT
GACGAGAGCCTGGAGGACGGGGAGGCCGTGGAGGAGAACATGAACATGCG
CGACGCGCGTCGCAACAATCGCAATAATGCCCAAAAGGCCAGCGAGAGTG
TCGGCGCGAAGAGGCGCCGAGACGACGCCTCGCCCCCTCCTTCCCGAAAC
GGCACGCAGAAGTACATGGCCACGGATAGCGGTAGAGGCGCCGGTGGCGG
CGGCGGGGAATTATCTTCTAGGGCGCGGGACCCTCGGGCGTTTCGCGCCG
CCGCCACAACCGCAGCGCGCGAAAGACGTCCAGAGCGCGCGGCGTCGGAG
GATAGCGATCGAGAACGCTCGCGGAGTCCCTCTGTGGGGCGCGTCCACGA
GTCACCACCTCGCCCTGCCCCGCAGCCTGCAAGGGTTTCCAACACCGGCG
CGTTGACGAGCCCCGCGGCGTCAGGCGGGGAGGTCGGGGACCAGCTCCGC
TACAGTGGTTGGTGGGGAGACGATCTCAGGTCGGGCAGGGAAACGGATCA
GAATGAATCGGTGGCCGTTGGTGGGTACATGGGGGGAGGGTGGAATCGGG
TGAGGAGCGCTGTAGGAACACTTGACCGCGATGGAATGGAAGCGGGAGAT
GAAGATGATGTGGAAGGCGAGGAAGAGGAGGAGGAGGGAGAGGAAGAAGA
AGAGGGGGAGGAAGAAAACGACGGAGCTGAGGAGTCTGACAGCAGCGGAA
GTAGTTCCAGTGGGGATGACGATGACGAGAGCCTGGAGGACGGGGAGGCC
GTGGAGGAGAACATGAACATGCGCGACGCGCGTCGCAACAATCGCAATAA
TGCCCAAAAGGCCAGCGAGAGTGTCGGCGCGAAGAGGCGCCGAGACGACG
CCTCGCCCCCTCCTTCCCGAAACGGCACGCAGAAGTACATGGCCACGGAT
AGCGGTAGAGGCGCCGGTGGCGGCGGCGGGGAATTATCTTCTAGGGCGCG
GGACCCTCGGGCGTTTCGCGCCGCCGCCACAACCGCAGCGCGCGAAAGAC
GTCCAGAGCGCGCGGCGTCGGAGGATAGCGATCGAGAACGCTCGCGGAGT
CCCTCTGTGGGGCGCGTCCACGAGTCACCACCTCGCCCTGCC
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