mRNA_P-canaliculata_contig100260.78.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100260.78.1
Unique NamemRNA_P-canaliculata_contig100260.78.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A2D6PXP4_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6PXP4_9BACT)

HSP 1 Score: 121 bits (304), Expect = 4.700e-29
Identity = 73/173 (42.20%), Postives = 99/173 (57.23%), Query Frame = 1
Query:    1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSADGSG----KVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHN-GVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLF 504
            V+ ++ G W     LVA  P     FG  V+IDG+ +AV +  AD +G     V+++ ++   W   A + A D  AGD+FG +I+LQGDRL VGA +HD   G W TGAAY+FE +   W QT +LV           D+FG  V LDG  VAIGA + D +  D+GAVY+F
Sbjct:  133 VYCRTGGTWDLEAKLVAVDPSPWALFGS-VAIDGDTIAVGAIGADAAGVDTGAVYVFSRNSAGWAQQAKLLAGDGAAGDRFGGTIALQGDRLVVGAPRHDDGAGTW-TGAAYVFERNGGAWTQTTELVA----SDATPDDRFGHGVALDGATVAIGAPYRDGNGADAGAVYVF 299          
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A2G6ESM3_9GAMM (Uncharacterized protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2G6ESM3_9GAMM)

HSP 1 Score: 108 bits (271), Expect = 2.240e-24
Identity = 68/178 (38.20%), Postives = 106/178 (59.55%), Query Frame = 1
Query:    1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSS-PSADG-------SGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGA-AFEDASSEDSGAVYLFD 507
            +F+ + G WV +  L A      + FG+ VS+D   +A+ +    +G        G V+++  + ++W  +A +TA+D    D+FG S SL G+R+A+GA   + NG  + GAAY+F+L N+ W+Q+ KL+  A  GS  A D FG S+ L+GNRVAIG+   +D ++   GAVYLFD
Sbjct:  228 IFDFNDGSWVQSAKLTASDGTNHSSFGNFVSLDNNRVAIRAYGQREGLFSHTIRPGAVYIFDFNGSSWVQSAKLTASDGDKWDKFGASFSLDGNRIAIGAHGVNVNGNDSQGAAYIFDLGNDGWRQSAKLI--AADGS--ADDHFGGSISLNGNRVAIGSNETDDNNNAPQGAVYLFD 401          
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A6H9KVA8_9BACT (T9SS C-terminal target domain-containing protein n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A6H9KVA8_9BACT)

HSP 1 Score: 108 bits (270), Expect = 2.780e-24
Identity = 59/172 (34.30%), Postives = 86/172 (50.00%), Query Frame = 1
Query:    1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAV----SSPSADGSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLF 504
            +F +S   W   E + A   D G RFG  VSI+G+ + V    +S +   SG  +++ +    W     +TA D    D FG S+S+ GD + VGA   D +G  N+G+AY+F  S   W Q  K     N     A  +FG +V +DGN   IGA  +D    +SG+ Y+F
Sbjct:  187 IFHRSGTSWTEQEKITASDADAGDRFGGQVSINGDYVIVGARHNSDAGSSSGSAYIFSRSGTTWTEQQKITANDAATDDYFGQSVSINGDYVIVGAWGDD-DGASNSGSAYIFNRSGATWTQQAKF----NANDAEANHRFGYAVSIDGNNAIIGAFLDDDGVSNSGSAYIF 353          
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A7C7GN53_9FLAO (Uncharacterized protein (Fragment) n=2 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7GN53_9FLAO)

HSP 1 Score: 108 bits (269), Expect = 4.200e-24
Identity = 59/172 (34.30%), Postives = 99/172 (57.56%), Query Frame = 1
Query:    1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGE-LLAVSSPSADGSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSE--DSGAVYLFD 507
            ++E + G W+  + L+A     G  FG+ VSI G+ ++A S    +GSG  ++Y+   + W   + +T +D  AGD+FG ++S+ G+R  VG+ + D NG   +G+AY+FEL    W Q+QK+            D FG++V +DGN   IG+ F+D ++    SG+ Y+F+
Sbjct:  212 IYELNNGSWMQTQILIASDAAAGDEFGYAVSISGDRVIAGSYKDDNGSGSAYIYELIGSTW-VESKITPSDGAAGDEFGYTVSISGNRAIVGSLRDDDNGN-ESGSAYIFELIGSFWVQSQKITPSDG----APDDYFGNAVSIDGNAAVIGSKFDDKNNNVLSSGSAYVFE 377          
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: W4LTA5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Entotheonella factor TaxID=1429438 RepID=W4LTA5_9BACT)

HSP 1 Score: 103 bits (256), Expect = 5.970e-24
Identity = 64/163 (39.26%), Postives = 96/163 (58.90%), Query Frame = 1
Query:    1 VFEK-SLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSADG----SGKVFLYQ-QDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFEL-SNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFED 468
            VFE+ S+G W     LVA      ++FG  V+IDG+ + + +   +     +G  ++++ Q +  WQ  A +TA+DT  GD FG+S+SL GDRL +GA     NG +++GAAY+FE  SN  WQ+  KL+  A+ G     D FG SV +DG+R+ +GA   D
Sbjct:   75 VFERLSVGNWQEVAKLVASDGLSVSQFGSSVAIDGDRVVIGAAGDNNGSRNAGSAYVFERQGKGNWQEVAKLTASDTEPGDLFGESVSLSGDRLVIGAIGEADNG-FSSGAAYVFERQSNGNWQEVAKLL--ASDGDFT--DSFGKSVSIDGDRLVVGAFLAD 232          
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A3M1PD12_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3M1PD12_9BACT)

HSP 1 Score: 106 bits (264), Expect = 8.080e-24
Identity = 66/172 (38.37%), Postives = 91/172 (52.91%), Query Frame = 1
Query:    1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSADGS----GKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLF 504
            VFE+  G W     L A   +    FG  VSI G+   V +   DGS    G  ++Y  D + W  AA +TA+D    DQFG S+SL GDR  VGA   D  G+ +TG AY+FE     W Q  KL+  A+ G++   D FG SV LDG+R  +G+  +    ++ GA Y++
Sbjct:  180 VFERGAGGWSQVAKLTASDGENNDNFGMAVSISGDRALVGAYLEDGSSTDVGAAYMYAWDGSTWSEAAKLTASDGVNNDQFGYSVSLDGDRALVGAWVGDGLGM-DTGTAYVFEWDGSSWSQAAKLM--ASDGALD--DGFGVSVSLDGDRALVGSYLDGDFDQNYGAAYVY 346          
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: UPI00082E65DD (FG-GAP repeat protein n=1 Tax=Methanoculleus horonobensis TaxID=528314 RepID=UPI00082E65DD)

HSP 1 Score: 105 bits (263), Expect = 8.390e-24
Identity = 60/171 (35.09%), Postives = 89/171 (52.05%), Query Frame = 1
Query:    1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSAD--GSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASS-EDSGAVYLF 504
            VF    G+W     + A  P  G  FG  V++ G L+ V + +AD  G+G ++L+++    W+  A V   D  A D FG ++++ GD +AVGA + D  G  + GAAY+F L         KL      G   A DQFG ++ L G+ +A+GA   D     D+GA+YLF
Sbjct:  185 VFTCRGGEWTNTAKITAGDPTPGAYFGQSVAVRGGLIVVGARNADPDGAGAIYLFRESSEGWEEIAKVAPPDGKADDNFGFTVAMAGDTIAVGARRADLPGAKDAGAAYVFSLHGNSVDLVTKLTA----GDARAGDQFGQAIALAGDLIAVGANRADTEEGADTGAIYLF 351          
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: X1UR08_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1UR08_9ZZZZ)

HSP 1 Score: 102 bits (255), Expect = 1.170e-23
Identity = 58/154 (37.66%), Postives = 84/154 (54.55%), Query Frame = 1
Query:   43 LVADTPDVGTRFGHDVSIDGELLAVSSPSADGSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLF 504
            L A        FG  VSIDG+   + +P  D  G  +++Q +  AW   A +TA+D  AGDQFG S+S+ GDR  +GA   D  G   +G+AY+F+     W +  KL   A+ G+  A D FG  V + G+R  IGA F+D +   SG+ Y++
Sbjct:   80 LTASDGATNDEFGSSVSIDGDRAIIGAPGDDPCGSAYVFQWNGTAWVEEAKLTASDGAAGDQFGCSVSINGDRAVIGAYYDDDKGD-RSGSAYVFKWDGTAWVEEAKLT--ASDGA--ATDCFGGFVSISGDRAVIGARFDDDNGLSSGSAYVY 228          
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A7V7T2N6_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7V7T2N6_9PROT)

HSP 1 Score: 105 bits (263), Expect = 1.170e-23
Identity = 67/177 (37.85%), Postives = 94/177 (53.11%), Query Frame = 1
Query:    1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSS----PSADGSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLFDTESG 519
            V++   G W  AET+     DV   FG  VS+ G+   + +     +   SG  +++     +W     + A+D  AGD FG S+SL GDR  +GA   D  G ++ G+AY+F+LS   W +T KL   A  GS  A D FG +V L G R  IGA F+DA   DSG+ YLF+ + G
Sbjct:  198 VYDLQGGSW--AETIKLIANDVTYYFGFSVSLSGDRALIGTYGNEDNGSNSGAAYVFDLQGGSWSQTDKLLASDGAAGDYFGWSVSLYGDRALIGAYGDDDKGSYS-GSAYVFDLSGGTWAETAKLT--AADGS--ANDYFGHTVSLFGARALIGAYFDDAIGNDSGSAYLFELQGG 367          
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Match: A0A3M0C4T8_9PROT (FG-GAP repeat protein n=1 Tax=Eilatimonas milleporae TaxID=911205 RepID=A0A3M0C4T8_9PROT)

HSP 1 Score: 105 bits (261), Expect = 1.710e-23
Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 1
Query:    1 VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSAD----GSGKVFLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGVWNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAIGAAFEDASSEDSGAVYLF 504
            +FE   G+W     L+A     G  FG  +S+  + + V +   D     +G  ++++Q    WQF   +TA+D+ AGD FG  + L GDR  +GA++ D     N GAAY+FE +N  WQQ  K+V           D+FG+ V + G  V +G+   +    D GA Y+F
Sbjct:  182 IFEDKGGEWQQTAVLLAPDRAPGDVFGISLSLSKDHILVGADLTDEGGENAGSAYIFEQIDGTWQFETKLTASDSDAGDLFGIRVKLNGDRALIGAARDDE-AAENAGAAYIFERTNNGWQQDTKIVAP----DATKDDRFGTRVAISGKTVIVGSILSNIEGTDVGAAYVF 348          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100260.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D6PXP4_9BACT4.700e-2942.20Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A2G6ESM3_9GAMM2.240e-2438.20Uncharacterized protein n=1 Tax=Gammaproteobacteri... [more]
A0A6H9KVA8_9BACT2.780e-2434.30T9SS C-terminal target domain-containing protein n... [more]
A0A7C7GN53_9FLAO4.200e-2434.30Uncharacterized protein (Fragment) n=2 Tax=Flavoba... [more]
W4LTA5_9BACT5.970e-2439.26Uncharacterized protein n=1 Tax=Candidatus Entothe... [more]
A0A3M1PD12_9BACT8.080e-2438.37Uncharacterized protein (Fragment) n=1 Tax=Bactero... [more]
UPI00082E65DD8.390e-2435.09FG-GAP repeat protein n=1 Tax=Methanoculleus horon... [more]
X1UR08_9ZZZZ1.170e-2337.66Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7V7T2N6_9PROT1.170e-2337.85Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A3M0C4T8_9PROT1.710e-2333.14FG-GAP repeat protein n=1 Tax=Eilatimonas millepor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100260contigP-canaliculata_contig100260:506..1027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score112.8
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog383372.Rcas_0423
KEGG koko:K12132
EggNOG free text desc.SMART Integrin alpha beta-propellor repeat protein
EggNOG OGs2G8YE@200795,37830@32061,COG3266@1,COG3266@2
EC2.7.11.1
COG Functional cat.S
Best tax levelChloroflexia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons1
Model size522
Cds size522
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.1976624-CDS-P-canaliculata_contig100260:505..10271622815575.1976624-CDS-P-canaliculata_contig100260:505..1027Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100260 506..1027 -
1693494145.6586404-CDS-P-canaliculata_contig100260:505..10271693494145.6586404-CDS-P-canaliculata_contig100260:505..1027Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100260 506..1027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100260.78.1prot_P-canaliculata_contig100260.78.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100260 506..1027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100260.78.1

>prot_P-canaliculata_contig100260.78.1 ID=prot_P-canaliculata_contig100260.78.1|Name=mRNA_P-canaliculata_contig100260.78.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=174bp
VFEKSLGQWVAAETLVADTPDVGTRFGHDVSIDGELLAVSSPSADGSGKV
FLYQQDQNAWQFAASVTATDTTAGDQFGDSISLQGDRLAVGASKHDHNGV
WNTGAAYLFELSNEQWQQTQKLVGQANYGSVIARDQFGSSVDLDGNRVAI
GAAFEDASSEDSGAVYLFDTESGE
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mRNA from alignment at P-canaliculata_contig100260:506..1027-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100260.78.1 ID=mRNA_P-canaliculata_contig100260.78.1|Name=mRNA_P-canaliculata_contig100260.78.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at P-canaliculata_contig100260:506..1027- (Pelvetia canaliculata dioecious)
GTTTTTGAGAAGTCGCTCGGTCAATGGGTGGCTGCCGAGACATTGGTCGC CGACACGCCAGACGTCGGGACTCGATTTGGCCACGACGTTTCGATTGATG GGGAATTGTTGGCGGTTTCATCTCCAAGCGCTGACGGCAGCGGAAAAGTG TTTCTTTACCAGCAAGATCAAAATGCGTGGCAGTTTGCGGCTTCGGTAAC GGCGACGGACACCACTGCCGGCGATCAGTTCGGCGACTCGATCAGTTTGC AGGGAGACCGATTGGCTGTCGGTGCGTCGAAGCATGATCACAATGGCGTT TGGAATACGGGTGCGGCGTATCTGTTTGAGCTTTCAAACGAACAGTGGCA GCAAACGCAAAAGCTTGTCGGTCAAGCCAACTACGGATCCGTGATCGCCC GCGACCAATTTGGTAGCTCTGTGGATCTCGATGGAAACCGGGTCGCCATC GGTGCCGCGTTTGAGGATGCCAGTAGCGAAGATTCGGGAGCTGTTTATCT GTTTGATACTGAAAGCGGCGAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100260:506..1027-

>mRNA_P-canaliculata_contig100260.78.1 ID=mRNA_P-canaliculata_contig100260.78.1|Name=mRNA_P-canaliculata_contig100260.78.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1044bp|location=Sequence derived from alignment at P-canaliculata_contig100260:506..1027- (Pelvetia canaliculata dioecious)
GTTTTTGAGAAGTCGCTCGGTCAATGGGTGGCTGCCGAGACATTGGTCGC
CGACACGCCAGACGTCGGGACTCGATTTGGCCACGACGTTTCGATTGATG
GGGAATTGTTGGCGGTTTCATCTCCAAGCGCTGACGGCAGCGGAAAAGTG
TTTCTTTACCAGCAAGATCAAAATGCGTGGCAGTTTGCGGCTTCGGTAAC
GGCGACGGACACCACTGCCGGCGATCAGTTCGGCGACTCGATCAGTTTGC
AGGGAGACCGATTGGCTGTCGGTGCGTCGAAGCATGATCACAATGGCGTT
TGGAATACGGGTGCGGCGTATCTGTTTGAGCTTTCAAACGAACAGTGGCA
GCAAACGCAAAAGCTTGTCGGTCAAGCCAACTACGGATCCGTGATCGCCC
GCGACCAATTTGGTAGCTCTGTGGATCTCGATGGAAACCGGGTCGCCATC
GGTGCCGCGTTTGAGGATGCCAGTAGCGAAGATTCGGGAGCTGTTTATCT
GTTTGATACTGAAAGCGGCGAGGTTTTTGAGAAGTCGCTCGGTCAATGGG
TGGCTGCCGAGACATTGGTCGCCGACACGCCAGACGTCGGGACTCGATTT
GGCCACGACGTTTCGATTGATGGGGAATTGTTGGCGGTTTCATCTCCAAG
CGCTGACGGCAGCGGAAAAGTGTTTCTTTACCAGCAAGATCAAAATGCGT
GGCAGTTTGCGGCTTCGGTAACGGCGACGGACACCACTGCCGGCGATCAG
TTCGGCGACTCGATCAGTTTGCAGGGAGACCGATTGGCTGTCGGTGCGTC
GAAGCATGATCACAATGGCGTTTGGAATACGGGTGCGGCGTATCTGTTTG
AGCTTTCAAACGAACAGTGGCAGCAAACGCAAAAGCTTGTCGGTCAAGCC
AACTACGGATCCGTGATCGCCCGCGACCAATTTGGTAGCTCTGTGGATCT
CGATGGAAACCGGGTCGCCATCGGTGCCGCGTTTGAGGATGCCAGTAGCG
AAGATTCGGGAGCTGTTTATCTGTTTGATACTGAAAGCGGCGAG
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