mRNA_P-canaliculata_contig100216.77.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100216.77.1
Unique NamemRNA_P-canaliculata_contig100216.77.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100216.77.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100216contigP-canaliculata_contig100216:346..696 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.2
Seed ortholog evalue3.6e-07
Seed eggNOG ortholog583355.Caka_2799
EggNOG free text desc.PFAM peptidase S8 and S53 subtilisin kexin sedolisin
EggNOG OGs3K8IM@414999,46VP5@74201,COG1404@1,COG1404@2,COG3391@1,COG3391@2
COG Functional cat.O
Best tax levelOpitutae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size351
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.149295-CDS-P-canaliculata_contig100216:345..6961622815575.149295-CDS-P-canaliculata_contig100216:345..696Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100216 346..696 -
1693494145.6417868-CDS-P-canaliculata_contig100216:345..6961693494145.6417868-CDS-P-canaliculata_contig100216:345..696Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100216 346..696 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100216.77.1prot_P-canaliculata_contig100216.77.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100216 346..696 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100216.77.1

>prot_P-canaliculata_contig100216.77.1 ID=prot_P-canaliculata_contig100216.77.1|Name=mRNA_P-canaliculata_contig100216.77.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=117bp
TSVTRPVSVTNPGAETVTISSVQTSPPFSFTGALPITIPGRSSRSFPLVF
SPITTGSSTVNLKLSTEELGDPPTIVTLSGTGTPAPSISISQSGFNETVA
LGTGEFTRTITLTNTGA
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mRNA from alignment at P-canaliculata_contig100216:346..696-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100216.77.1 ID=mRNA_P-canaliculata_contig100216.77.1|Name=mRNA_P-canaliculata_contig100216.77.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=351bp|location=Sequence derived from alignment at P-canaliculata_contig100216:346..696- (Pelvetia canaliculata dioecious)
ACGAGCGTTACGCGCCCAGTCAGTGTAACAAACCCGGGGGCCGAAACGGT
TACTATTTCTTCAGTTCAGACATCTCCACCTTTCTCTTTTACTGGTGCGC
TACCAATTACAATTCCGGGGCGGAGTAGCCGCTCATTTCCATTGGTGTTC
TCGCCCATAACAACTGGCTCATCCACAGTAAACCTGAAACTGTCCACTGA
GGAACTCGGAGACCCACCGACCATAGTTACACTTTCTGGCACCGGCACTC
CAGCGCCCTCGATCTCGATCAGCCAATCAGGTTTCAATGAAACCGTGGCA
CTTGGCACCGGGGAGTTCACCAGGACGATCACACTTACCAATACTGGAGC
C
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Coding sequence (CDS) from alignment at P-canaliculata_contig100216:346..696-

>mRNA_P-canaliculata_contig100216.77.1 ID=mRNA_P-canaliculata_contig100216.77.1|Name=mRNA_P-canaliculata_contig100216.77.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=702bp|location=Sequence derived from alignment at P-canaliculata_contig100216:346..696- (Pelvetia canaliculata dioecious)
ACGAGCGTTACGCGCCCAGTCAGTGTAACAAACCCGGGGGCCGAAACGGT
TACTATTTCTTCAGTTCAGACATCTCCACCTTTCTCTTTTACTGGTGCGC
TACCAATTACAATTCCGGGGCGGAGTAGCCGCTCATTTCCATTGGTGTTC
TCGCCCATAACAACTGGCTCATCCACAGTAAACCTGAAACTGTCCACTGA
GGAACTCGGAGACCCACCGACCATAGTTACACTTTCTGGCACCGGCACTC
CAGCGCCCTCGATCTCGATCAGCCAATCAGGTTTCAATGAAACCGTGGCA
CTTGGCACCGGGGAGTTCACCAGGACGATCACACTTACCAATACTGGAGC
CACGAGCGTTACGCGCCCAGTCAGTGTAACAAACCCGGGGGCCGAAACGG
TTACTATTTCTTCAGTTCAGACATCTCCACCTTTCTCTTTTACTGGTGCG
CTACCAATTACAATTCCGGGGCGGAGTAGCCGCTCATTTCCATTGGTGTT
CTCGCCCATAACAACTGGCTCATCCACAGTAAACCTGAAACTGTCCACTG
AGGAACTCGGAGACCCACCGACCATAGTTACACTTTCTGGCACCGGCACT
CCAGCGCCCTCGATCTCGATCAGCCAATCAGGTTTCAATGAAACCGTGGC
ACTTGGCACCGGGGAGTTCACCAGGACGATCACACTTACCAATACTGGAG
CC
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