mRNA_P-canaliculata_contig100139.66.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100139.66.1
Unique NamemRNA_P-canaliculata_contig100139.66.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig100139.66.1 vs. uniprot
Match: A0A518ESB1_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518ESB1_9BACT)

HSP 1 Score: 161 bits (408), Expect = 9.200e-46
Identity = 78/123 (63.41%), Postives = 93/123 (75.61%), Query Frame = 1 
Query:    7 REDVGGAIDAGIAYLIAQQKPDGSWGDDAPKMLELGFALNTYRSWRIASHGISCMALACVDETPERLDALRSAVKFLSEAELPKRDSDWDIDYVWTSLYGFTAAIELLGDPRLQEEGSLASLR 375
            RE  G AID   A+L+ + + DGSWGDD P + E+GFAL+T+RSWRIASHGI CMALA +DETPER  AL  AV +L + ELP+RDSDWDIDYVW+SLYGFTA IELL D R Q +   A L+
Sbjct:   43 REAAGPAIDQAAAFLVGEIREDGSWGDDLPTLEEVGFALSTFRSWRIASHGIVCMALASLDETPERRAALERAVGWLCDCELPRRDSDWDIDYVWSSLYGFTATIELLQDERFQVDAWRARLQ 165
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BLAST of mRNA_P-canaliculata_contig100139.66.1 vs. uniprot
Match: A0A523PU28_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PU28_9BACT)

HSP 1 Score: 107 bits (268), Expect = 3.540e-25
Identity = 53/125 (42.40%), Postives = 77/125 (61.60%), Query Frame = 1 
Query:    1 MAREDVGGAIDAGIAYLIAQQKPDGSWGDDA-PKMLELGFALNTYRSWRIASHGISCMALACVDETPERLDALRSAVKFLSEAELPKRDSDWDIDYVWTSLYGFTAAIELLGDPRLQEEGSLASL 372
            ++RE+V   +D  + YL+  Q   G WG  A   +L+LGFA  TY +++  +H ++CMALA V ET ER  AL +AV +L  + +P R  DWDID VW++LYGF A ++L+ D R   +   A L
Sbjct:   44 LSREEVYTDLDRAVQYLVDTQAETGRWGTRACESLLDLGFATETYHAYQFGAHAVACMALAAVSETSERRIALENAVHWLCGSPIPTRGDDWDIDNVWSALYGFVALVDLVQDERFARDPWKAGL 168
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BLAST of mRNA_P-canaliculata_contig100139.66.1 vs. uniprot
Match: A0A7Y5PYG1_9PLAN (Terpene cyclase/mutase family protein n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7Y5PYG1_9PLAN)

HSP 1 Score: 102 bits (255), Expect = 1.770e-23
Identity = 47/115 (40.87%), Postives = 70/115 (60.87%), Query Frame = 1 
Query:    1 MAREDVGGAIDAGIAYLIAQQKPDGSWGDDAP-KMLELGFALNTYRSWRIASHGISCMALACVDETPERLDALRSAVKFLSEAELPKRDSDWDIDYVWTSLYGFTAAIELLGDPR 342
            M +E    A++  +A++   Q PDGSW   AP  ++ELGF+  TY +W++ +  ++ MAL   +ETPER  AL   +++     LP R  DWD+DY+W SLYG   A++ L DPR
Sbjct:   34 MTQEQARVALERSLAFITGSQNPDGSWCGSAPDSVMELGFSPETYYTWQLGAVELTLMALMQCEETPERRAALDKGMQWFCTTRLPARGDDWDVDYMWPSLYGVVCAVDALDDPR 148
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BLAST of mRNA_P-canaliculata_contig100139.66.1 vs. uniprot
Match: A0A7C2L212_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C2L212_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 9.270e-11
Identity = 34/110 (30.91%), Postives = 53/110 (48.18%), Query Frame = 1 
Query:   25 AIDAGIAYLIAQQKPDGSWGDDAPKMLELGFAL----NTYRSWRIASHGISCMALACVDETPERLDALRSAVKFLSEAELPKRDSDWDIDYVWTSLYGFTAAIELLGDPR 342
            AI  G+A+L+A Q PDGSWG     +     ++     T+RSW++A+ G+ C+AL    +    L      + +L +    +R S+WD    W  +YG  A       PR
Sbjct:   43 AISRGVAFLLADQNPDGSWGGPRNAVWTFTGSVWSNPETHRSWKVATTGLCCLALLEAGDGEPALSTANRGIDYLLDHAAVRRPSEWDTMNNWAYIYGVQALAAAYAHPR 152
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BLAST of mRNA_P-canaliculata_contig100139.66.1 vs. uniprot
Match: A0A5B9W5M4_9BACT (Uncharacterized protein n=1 Tax=Aquisphaera giovannonii TaxID=406548 RepID=A0A5B9W5M4_9BACT)

HSP 1 Score: 52.0 bits (123), Expect = 3.270e-5
Identity = 41/133 (30.83%), Postives = 67/133 (50.38%), Query Frame = 1 
Query:   13 DVGGAIDAGIAYLIAQQKPDGSWGD-DAPKMLELGFALNTYRSWRIASHGISCMAL-----ACVDETPERLD---------ALRSAVKFLSEAELPK-RDSDWDIDY-VWTSLYGFTAAIELLGDPRLQEEGS 360
            ++  +I+ G+A+L+  Q+PDGSWG  +  K L +   + ++ ++R+A+  +   AL     A    TP R++         A+     FL   ELP+ R  D  + Y VW   YG TA + + G  RL  EG+
Sbjct:   63 EIAASINRGVAFLLKDQRPDGSWGSPERTKELNIIAGVGSHHAFRVATTALCVAALTEATQAAEARTPGRVELARPEDVRRAIERGEDFLFR-ELPRVRRHDAMLIYNVWAHAYGITALVRMHG--RLPGEGA 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100139.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A518ESB1_9BACT9.200e-4663.41Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A523PU28_9BACT3.540e-2542.40Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A7Y5PYG1_9PLAN1.770e-2340.87Terpene cyclase/mutase family protein n=1 Tax=Plan... [more]
A0A7C2L212_9BACT9.270e-1130.91Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A5B9W5M4_9BACT3.270e-530.83Uncharacterized protein n=1 Tax=Aquisphaera giovan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100139contigP-canaliculata_contig100139:6..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size375
Cds size375
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.2300231-CDS-P-canaliculata_contig100139:5..3801622815574.2300231-CDS-P-canaliculata_contig100139:5..380Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100139 6..380 -
1693494145.0476973-CDS-P-canaliculata_contig100139:5..3801693494145.0476973-CDS-P-canaliculata_contig100139:5..380Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100139 6..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100139.66.1prot_P-canaliculata_contig100139.66.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100139 6..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100139.66.1

>prot_P-canaliculata_contig100139.66.1 ID=prot_P-canaliculata_contig100139.66.1|Name=mRNA_P-canaliculata_contig100139.66.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=125bp
MAREDVGGAIDAGIAYLIAQQKPDGSWGDDAPKMLELGFALNTYRSWRIA
SHGISCMALACVDETPERLDALRSAVKFLSEAELPKRDSDWDIDYVWTSL
YGFTAAIELLGDPRLQEEGSLASLR
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mRNA from alignment at P-canaliculata_contig100139:6..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100139.66.1 ID=mRNA_P-canaliculata_contig100139.66.1|Name=mRNA_P-canaliculata_contig100139.66.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=375bp|location=Sequence derived from alignment at P-canaliculata_contig100139:6..380- (Pelvetia canaliculata dioecious)
ATGGCCCGGGAGGACGTGGGGGGGGCCATCGACGCCGGCATCGCCTACCT
TATCGCCCAGCAAAAGCCGGACGGATCCTGGGGCGACGATGCACCCAAAA
TGCTCGAGCTCGGCTTCGCCCTCAACACCTACCGCTCATGGCGCATCGCA
AGCCACGGGATCTCCTGCATGGCGCTCGCCTGCGTGGATGAGACGCCCGA
GCGCTTAGACGCGCTACGCAGCGCGGTGAAGTTCCTCTCTGAGGCGGAGC
TGCCGAAGCGGGATAGCGACTGGGACATCGACTACGTTTGGACGAGCCTC
TACGGGTTCACGGCCGCCATCGAGCTGCTCGGGGATCCGCGGCTTCAAGA
GGAAGGCTCCCTCGCGTCCCTGCGG
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Coding sequence (CDS) from alignment at P-canaliculata_contig100139:6..380-

>mRNA_P-canaliculata_contig100139.66.1 ID=mRNA_P-canaliculata_contig100139.66.1|Name=mRNA_P-canaliculata_contig100139.66.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at P-canaliculata_contig100139:6..380- (Pelvetia canaliculata dioecious)
ATGGCCCGGGAGGACGTGGGGGGGGCCATCGACGCCGGCATCGCCTACCT
TATCGCCCAGCAAAAGCCGGACGGATCCTGGGGCGACGATGCACCCAAAA
TGCTCGAGCTCGGCTTCGCCCTCAACACCTACCGCTCATGGCGCATCGCA
AGCCACGGGATCTCCTGCATGGCGCTCGCCTGCGTGGATGAGACGCCCGA
GCGCTTAGACGCGCTACGCAGCGCGGTGAAGTTCCTCTCTGAGGCGGAGC
TGCCGAAGCGGGATAGCGACTGGGACATCGACTACGTTTGGACGAGCCTC
TACGGGTTCACGGCCGCCATCGAGCTGCTCGGGGATCCGCGGCTTCAAGA
GGAAGGCTCCCTCGCGTCCCTGCGGATGGCCCGGGAGGACGTGGGGGGGG
CCATCGACGCCGGCATCGCCTACCTTATCGCCCAGCAAAAGCCGGACGGA
TCCTGGGGCGACGATGCACCCAAAATGCTCGAGCTCGGCTTCGCCCTCAA
CACCTACCGCTCATGGCGCATCGCAAGCCACGGGATCTCCTGCATGGCGC
TCGCCTGCGTGGATGAGACGCCCGAGCGCTTAGACGCGCTACGCAGCGCG
GTGAAGTTCCTCTCTGAGGCGGAGCTGCCGAAGCGGGATAGCGACTGGGA
CATCGACTACGTTTGGACGAGCCTCTACGGGTTCACGGCCGCCATCGAGC
TGCTCGGGGATCCGCGGCTTCAAGAGGAAGGCTCCCTCGCGTCCCTGCGG
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