prot_P-canaliculata_contig104729.652.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig104729.652.1
Unique Name	prot_P-canaliculata_contig104729.652.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	108

Homology

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BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: UPI001671ECC7 (transcriptional regulator n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI001671ECC7)

HSP 1 Score: 191 bits (486), Expect = 1.810e-61
Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = 0

Query:    4 DNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLGHSISNG 107
            D P+ID+ A+DDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAG+VRQEKGY GKRPQTLVHLT  GRKAWI YL+AMK LLGHSIS+G
Sbjct:    3 DTPNIDLDAVDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGYVRQEKGYKGKRPQTLVHLTSDGRKAWIAYLEAMKTLLGHSISDG 106

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BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: UPI0003FF3943 (transcriptional regulator n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003FF3943)

HSP 1 Score: 169 bits (428), Expect = 1.090e-52
Identity = 79/101 (78.22%), Postives = 89/101 (88.12%), Query Frame = 0

Query:    1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 101
            M+   P +++ AIDDVIHGRLRLG+MAYLSAVNPASFPEL++KTG +NGNLSTHLTKLE AG+VRQEKGY GKRPQTLVHLT +GR AWI YLDAMK LLG
Sbjct:    1 MADTEPHLNLDAIDDVIHGRLRLGIMAYLSAVNPASFPELLEKTGTSNGNLSTHLTKLEGAGYVRQEKGYKGKRPQTLVHLTASGRTAWIAYLDAMKTLLG 101

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BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: UPI000362296E (transcriptional regulator n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI000362296E)

HSP 1 Score: 168 bits (426), Expect = 2.330e-52
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 0

Query:    1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 101
            M   N   +I AIDD+IHGRLRLG+MAYLSA+ PASFPEL+D+TGATNGNLSTHLTKLETAG+VRQEKGYNGKRPQTLV+LT  GR AWI YLDAM+ALLG
Sbjct:    1 MPDKNEAPEIDAIDDIIHGRLRLGIMAYLSAIEPASFPELLDRTGATNGNLSTHLTKLETAGYVRQEKGYNGKRPQTLVYLTKDGRAAWIVYLDAMRALLG 101

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BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A520MC24_9GAMM (Transcriptional regulator n=1 Tax=SAR92 clade bacterium TaxID=2315479 RepID=A0A520MC24_9GAMM)

HSP 1 Score: 163 bits (413), Expect = 2.170e-50
Identity = 75/100 (75.00%), Postives = 88/100 (88.00%), Query Frame = 0

Query:    1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 100
            MS  NP +DI AID+VIHGRLRLG+MAYLSAVNPASFPEL+DKTGA+NGNLSTHL+KLE  G++ QEKGY GK+PQTLVHLT +GR AWI YL AM++L+
Sbjct:    1 MSPKNPSVDIEAIDEVIHGRLRLGIMAYLSAVNPASFPELLDKTGASNGNLSTHLSKLEAVGYIAQEKGYAGKKPQTLVHLTDSGRDAWINYLTAMQSLI 100

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BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A2G2G7A4_9PROT (Transcriptional regulator n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2G7A4_9PROT)

HSP 1 Score: 160 bits (404), Expect = 4.520e-49
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 0

Query:    9 DIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 101
            DI  IDD+IHGRLRLG+MAYLS  +PASFP+L+++TGATNGNLSTHLTKLETAG++RQEKGYNGKRPQTLVHLT  GR AWI YLD M+ +LG
Sbjct:    5 DIHRIDDIIHGRLRLGIMAYLSTASPASFPDLLNRTGATNGNLSTHLTKLETAGYIRQEKGYNGKRPQTLVHLTEDGRTAWITYLDTMRVMLG 97

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BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A520XMN2_9ACTN (Transcriptional regulator n=2 Tax=Bacteria TaxID=2 RepID=A0A520XMN2_9ACTN)

HSP 1 Score: 159 bits (403), Expect = 6.220e-49
Identity = 75/88 (85.23%), Postives = 82/88 (93.18%), Query Frame = 0

Query:   13 IDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 100
            I+ +IHGRLRLGVMAYLS+VNPASFPEL  KTGATNGNLSTHLTKLETAGF+RQEKGY+GKRPQTLVHLTPAGR AWIEYL AM+ +L
Sbjct:    8 INGIIHGRLRLGVMAYLSSVNPASFPELQQKTGATNGNLSTHLTKLETAGFIRQEKGYSGKRPQTLVHLTPAGRDAWIEYLGAMRDML 95

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BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A0R2U6U5_9GAMM (Transcriptional regulator n=1 Tax=SAR92 bacterium BACL26 MAG-121220-bin70 TaxID=1655626 RepID=A0A0R2U6U5_9GAMM)

HSP 1 Score: 157 bits (396), Expect = 8.740e-48
Identity = 73/100 (73.00%), Postives = 89/100 (89.00%), Query Frame = 0

Query:    1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 100
            MS +  +I+I  ID+VIHGRLRLG+MAYLSAV+PASFPEL+ KTG TNGNLSTHLTKLE++G+V QEKGY+GK+PQTLV+LT AGR+AWI YL+AM+ LL
Sbjct:    1 MSTNKQEINIDGIDEVIHGRLRLGIMAYLSAVDPASFPELLGKTGTTNGNLSTHLTKLESSGYVTQEKGYSGKKPQTLVYLTKAGREAWIAYLNAMRTLL 100

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BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A420WFQ1_9PROT (Transcriptional regulator n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WFQ1_9PROT)

HSP 1 Score: 157 bits (396), Expect = 1.310e-47
Identity = 69/96 (71.88%), Postives = 86/96 (89.58%), Query Frame = 0

Query:    7 DIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLGH 102
            ++D+ A+DD IHGRLR+G+MAYLSAVNPASFPEL++KTG +NGNLSTHLTKLETAGFV+ EKG+ GKRPQTLV++T  GR+AWI+YLD M+ +L H
Sbjct:   21 ELDLDAVDDTIHGRLRMGIMAYLSAVNPASFPELLEKTGTSNGNLSTHLTKLETAGFVKIEKGFKGKRPQTLVYVTDKGRQAWIDYLDIMRRILEH 116

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BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A8J3G0Q6_9PROT (Transcriptional regulator n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3G0Q6_9PROT)

HSP 1 Score: 153 bits (387), Expect = 1.930e-46
Identity = 69/96 (71.88%), Postives = 82/96 (85.42%), Query Frame = 0

Query:    6 PDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 101
            P+ DI  +D+VIHGR+RL VMAYLSAV+PASFPEL +KTG TNGNLSTHLTKLE+A +V  EKGY GKRPQTLVHLT  GRKAW++YL AM+ ++G
Sbjct:    5 PEFDISQVDEVIHGRIRLAVMAYLSAVSPASFPELTEKTGTTNGNLSTHLTKLESANYVELEKGYKGKRPQTLVHLTATGRKAWLKYLSAMRDIIG 100

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BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A2G2IYZ2_9PROT (Transcriptional regulator n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2IYZ2_9PROT)

HSP 1 Score: 146 bits (368), Expect = 1.350e-43
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 0

Query:   13 IDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 100
            I+D+IHGRLRLGVMAYLS  +P SFPEL+  T ATNGNLSTHLTKLETAGF+ QEKGY GKRPQTLVHLT  GR AWIEYL AM+ +L
Sbjct:    8 INDIIHGRLRLGVMAYLSTASPVSFPELLKVTEATNGNLSTHLTKLETAGFIHQEKGYKGKRPQTLVHLTDEGRSAWIEYLKAMRLML 95

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
UPI001671ECC7	1.810e-61	87.50	transcriptional regulator n=1 Tax=Litorimonas clad...	[more]
UPI0003FF3943	1.090e-52	78.22	transcriptional regulator n=1 Tax=Hellea balneolen...	[more]
UPI000362296E	2.330e-52	79.21	transcriptional regulator n=1 Tax=Robiginitomaculu...	[more]
A0A520MC24_9GAMM	2.170e-50	75.00	Transcriptional regulator n=1 Tax=SAR92 clade bact...	[more]
A0A2G2G7A4_9PROT	4.520e-49	77.42	Transcriptional regulator n=1 Tax=Robiginitomaculu...	[more]
A0A520XMN2_9ACTN	6.220e-49	85.23	Transcriptional regulator n=2 Tax=Bacteria TaxID=2...	[more]
A0A0R2U6U5_9GAMM	8.740e-48	73.00	Transcriptional regulator n=1 Tax=SAR92 bacterium ...	[more]
A0A420WFQ1_9PROT	1.310e-47	71.88	Transcriptional regulator n=1 Tax=Litorimonas taea...	[more]
A0A8J3G0Q6_9PROT	1.930e-46	71.88	Transcriptional regulator n=1 Tax=Algimonas arctic...	[more]
A0A2G2IYZ2_9PROT	1.350e-43	77.27	Transcriptional regulator n=1 Tax=Robiginitomaculu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027395	Winged helix DNA-binding domain	PFAM	PF13601	HTH_34	coord: 21..100 e-value: 6.0E-26 score: 90.4
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 11..102 e-value: 3.6E-24 score: 86.4
None	No IPR available	PANTHER	PTHR37318	FAMILY NOT NAMED	coord: 13..100
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 15..101

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig104729	contig	P-canaliculata_contig104729:226..549 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig104729.652.1	mRNA_P-canaliculata_contig104729.652.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig104729 226..549 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig104729.652.1 ID=prot_P-canaliculata_contig104729.652.1|Name=mRNA_P-canaliculata_contig104729.652.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=108bp
MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGN
LSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL
GHSISNG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR027395	WH_DNA-bd_dom
IPR036388	WH-like_DNA-bd_sf
IPR036390	WH_DNA-bd_sf