mRNA_P-canaliculata_contig104729.652.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: UPI001671ECC7 (transcriptional regulator n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI001671ECC7) HSP 1 Score: 191 bits (486), Expect = 1.810e-61 Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = 1
Query: 10 DNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLGHSISNG 321
D P+ID+ A+DDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAG+VRQEKGY GKRPQTLVHLT GRKAWI YL+AMK LLGHSIS+G
Sbjct: 3 DTPNIDLDAVDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGYVRQEKGYKGKRPQTLVHLTSDGRKAWIAYLEAMKTLLGHSISDG 106
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: UPI0003FF3943 (transcriptional regulator n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003FF3943) HSP 1 Score: 169 bits (428), Expect = 1.090e-52 Identity = 79/101 (78.22%), Postives = 89/101 (88.12%), Query Frame = 1
Query: 1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 303
M+ P +++ AIDDVIHGRLRLG+MAYLSAVNPASFPEL++KTG +NGNLSTHLTKLE AG+VRQEKGY GKRPQTLVHLT +GR AWI YLDAMK LLG
Sbjct: 1 MADTEPHLNLDAIDDVIHGRLRLGIMAYLSAVNPASFPELLEKTGTSNGNLSTHLTKLEGAGYVRQEKGYKGKRPQTLVHLTASGRTAWIAYLDAMKTLLG 101
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: UPI000362296E (transcriptional regulator n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI000362296E) HSP 1 Score: 168 bits (426), Expect = 2.330e-52 Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 1
Query: 1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 303
M N +I AIDD+IHGRLRLG+MAYLSA+ PASFPEL+D+TGATNGNLSTHLTKLETAG+VRQEKGYNGKRPQTLV+LT GR AWI YLDAM+ALLG
Sbjct: 1 MPDKNEAPEIDAIDDIIHGRLRLGIMAYLSAIEPASFPELLDRTGATNGNLSTHLTKLETAGYVRQEKGYNGKRPQTLVYLTKDGRAAWIVYLDAMRALLG 101
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A520MC24_9GAMM (Transcriptional regulator n=1 Tax=SAR92 clade bacterium TaxID=2315479 RepID=A0A520MC24_9GAMM) HSP 1 Score: 163 bits (413), Expect = 2.170e-50 Identity = 75/100 (75.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query: 1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 300
MS NP +DI AID+VIHGRLRLG+MAYLSAVNPASFPEL+DKTGA+NGNLSTHL+KLE G++ QEKGY GK+PQTLVHLT +GR AWI YL AM++L+
Sbjct: 1 MSPKNPSVDIEAIDEVIHGRLRLGIMAYLSAVNPASFPELLDKTGASNGNLSTHLSKLEAVGYIAQEKGYAGKKPQTLVHLTDSGRDAWINYLTAMQSLI 100
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A2G2G7A4_9PROT (Transcriptional regulator n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2G7A4_9PROT) HSP 1 Score: 160 bits (404), Expect = 4.520e-49 Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 1
Query: 25 DIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 303
DI IDD+IHGRLRLG+MAYLS +PASFP+L+++TGATNGNLSTHLTKLETAG++RQEKGYNGKRPQTLVHLT GR AWI YLD M+ +LG
Sbjct: 5 DIHRIDDIIHGRLRLGIMAYLSTASPASFPDLLNRTGATNGNLSTHLTKLETAGYIRQEKGYNGKRPQTLVHLTEDGRTAWITYLDTMRVMLG 97
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A520XMN2_9ACTN (Transcriptional regulator n=2 Tax=Bacteria TaxID=2 RepID=A0A520XMN2_9ACTN) HSP 1 Score: 159 bits (403), Expect = 6.220e-49 Identity = 75/88 (85.23%), Postives = 82/88 (93.18%), Query Frame = 1
Query: 37 IDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 300
I+ +IHGRLRLGVMAYLS+VNPASFPEL KTGATNGNLSTHLTKLETAGF+RQEKGY+GKRPQTLVHLTPAGR AWIEYL AM+ +L
Sbjct: 8 INGIIHGRLRLGVMAYLSSVNPASFPELQQKTGATNGNLSTHLTKLETAGFIRQEKGYSGKRPQTLVHLTPAGRDAWIEYLGAMRDML 95
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A0R2U6U5_9GAMM (Transcriptional regulator n=1 Tax=SAR92 bacterium BACL26 MAG-121220-bin70 TaxID=1655626 RepID=A0A0R2U6U5_9GAMM) HSP 1 Score: 157 bits (396), Expect = 8.740e-48 Identity = 73/100 (73.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query: 1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 300
MS + +I+I ID+VIHGRLRLG+MAYLSAV+PASFPEL+ KTG TNGNLSTHLTKLE++G+V QEKGY+GK+PQTLV+LT AGR+AWI YL+AM+ LL
Sbjct: 1 MSTNKQEINIDGIDEVIHGRLRLGIMAYLSAVDPASFPELLGKTGTTNGNLSTHLTKLESSGYVTQEKGYSGKKPQTLVYLTKAGREAWIAYLNAMRTLL 100
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A420WFQ1_9PROT (Transcriptional regulator n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WFQ1_9PROT) HSP 1 Score: 157 bits (396), Expect = 1.310e-47 Identity = 69/96 (71.88%), Postives = 86/96 (89.58%), Query Frame = 1
Query: 19 DIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLGH 306
++D+ A+DD IHGRLR+G+MAYLSAVNPASFPEL++KTG +NGNLSTHLTKLETAGFV+ EKG+ GKRPQTLV++T GR+AWI+YLD M+ +L H
Sbjct: 21 ELDLDAVDDTIHGRLRMGIMAYLSAVNPASFPELLEKTGTSNGNLSTHLTKLETAGFVKIEKGFKGKRPQTLVYVTDKGRQAWIDYLDIMRRILEH 116
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A8J3G0Q6_9PROT (Transcriptional regulator n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3G0Q6_9PROT) HSP 1 Score: 153 bits (387), Expect = 1.930e-46 Identity = 69/96 (71.88%), Postives = 82/96 (85.42%), Query Frame = 1
Query: 16 PDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 303
P+ DI +D+VIHGR+RL VMAYLSAV+PASFPEL +KTG TNGNLSTHLTKLE+A +V EKGY GKRPQTLVHLT GRKAW++YL AM+ ++G
Sbjct: 5 PEFDISQVDEVIHGRIRLAVMAYLSAVSPASFPELTEKTGTTNGNLSTHLTKLESANYVELEKGYKGKRPQTLVHLTATGRKAWLKYLSAMRDIIG 100
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A2G2IYZ2_9PROT (Transcriptional regulator n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2IYZ2_9PROT) HSP 1 Score: 146 bits (368), Expect = 1.350e-43 Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 1
Query: 37 IDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 300
I+D+IHGRLRLGVMAYLS +P SFPEL+ T ATNGNLSTHLTKLETAGF+ QEKGY GKRPQTLVHLT GR AWIEYL AM+ +L
Sbjct: 8 INDIIHGRLRLGVMAYLSTASPVSFPELLKVTEATNGNLSTHLTKLETAGFIHQEKGYKGKRPQTLVHLTDEGRSAWIEYLKAMRLML 95 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig104729.652.1 >prot_P-canaliculata_contig104729.652.1 ID=prot_P-canaliculata_contig104729.652.1|Name=mRNA_P-canaliculata_contig104729.652.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=108bp MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNback to top mRNA from alignment at P-canaliculata_contig104729:226..549+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig104729.652.1 ID=mRNA_P-canaliculata_contig104729.652.1|Name=mRNA_P-canaliculata_contig104729.652.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at P-canaliculata_contig104729:226..549+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig104729:226..549+ >mRNA_P-canaliculata_contig104729.652.1 ID=mRNA_P-canaliculata_contig104729.652.1|Name=mRNA_P-canaliculata_contig104729.652.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at P-canaliculata_contig104729:226..549+ (Pelvetia canaliculata dioecious)back to top |