mRNA_P-canaliculata_contig104729.652.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig104729.652.1
Unique NamemRNA_P-canaliculata_contig104729.652.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: UPI001671ECC7 (transcriptional regulator n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI001671ECC7)

HSP 1 Score: 191 bits (486), Expect = 1.810e-61
Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = 1
Query:   10 DNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLGHSISNG 321
            D P+ID+ A+DDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAG+VRQEKGY GKRPQTLVHLT  GRKAWI YL+AMK LLGHSIS+G
Sbjct:    3 DTPNIDLDAVDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGYVRQEKGYKGKRPQTLVHLTSDGRKAWIAYLEAMKTLLGHSISDG 106          
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: UPI0003FF3943 (transcriptional regulator n=1 Tax=Hellea balneolensis TaxID=287478 RepID=UPI0003FF3943)

HSP 1 Score: 169 bits (428), Expect = 1.090e-52
Identity = 79/101 (78.22%), Postives = 89/101 (88.12%), Query Frame = 1
Query:    1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 303
            M+   P +++ AIDDVIHGRLRLG+MAYLSAVNPASFPEL++KTG +NGNLSTHLTKLE AG+VRQEKGY GKRPQTLVHLT +GR AWI YLDAMK LLG
Sbjct:    1 MADTEPHLNLDAIDDVIHGRLRLGIMAYLSAVNPASFPELLEKTGTSNGNLSTHLTKLEGAGYVRQEKGYKGKRPQTLVHLTASGRTAWIAYLDAMKTLLG 101          
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: UPI000362296E (transcriptional regulator n=1 Tax=Robiginitomaculum antarcticum TaxID=437507 RepID=UPI000362296E)

HSP 1 Score: 168 bits (426), Expect = 2.330e-52
Identity = 80/101 (79.21%), Postives = 89/101 (88.12%), Query Frame = 1
Query:    1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 303
            M   N   +I AIDD+IHGRLRLG+MAYLSA+ PASFPEL+D+TGATNGNLSTHLTKLETAG+VRQEKGYNGKRPQTLV+LT  GR AWI YLDAM+ALLG
Sbjct:    1 MPDKNEAPEIDAIDDIIHGRLRLGIMAYLSAIEPASFPELLDRTGATNGNLSTHLTKLETAGYVRQEKGYNGKRPQTLVYLTKDGRAAWIVYLDAMRALLG 101          
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A520MC24_9GAMM (Transcriptional regulator n=1 Tax=SAR92 clade bacterium TaxID=2315479 RepID=A0A520MC24_9GAMM)

HSP 1 Score: 163 bits (413), Expect = 2.170e-50
Identity = 75/100 (75.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:    1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 300
            MS  NP +DI AID+VIHGRLRLG+MAYLSAVNPASFPEL+DKTGA+NGNLSTHL+KLE  G++ QEKGY GK+PQTLVHLT +GR AWI YL AM++L+
Sbjct:    1 MSPKNPSVDIEAIDEVIHGRLRLGIMAYLSAVNPASFPELLDKTGASNGNLSTHLSKLEAVGYIAQEKGYAGKKPQTLVHLTDSGRDAWINYLTAMQSLI 100          
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A2G2G7A4_9PROT (Transcriptional regulator n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2G7A4_9PROT)

HSP 1 Score: 160 bits (404), Expect = 4.520e-49
Identity = 72/93 (77.42%), Postives = 83/93 (89.25%), Query Frame = 1
Query:   25 DIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 303
            DI  IDD+IHGRLRLG+MAYLS  +PASFP+L+++TGATNGNLSTHLTKLETAG++RQEKGYNGKRPQTLVHLT  GR AWI YLD M+ +LG
Sbjct:    5 DIHRIDDIIHGRLRLGIMAYLSTASPASFPDLLNRTGATNGNLSTHLTKLETAGYIRQEKGYNGKRPQTLVHLTEDGRTAWITYLDTMRVMLG 97          
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A520XMN2_9ACTN (Transcriptional regulator n=2 Tax=Bacteria TaxID=2 RepID=A0A520XMN2_9ACTN)

HSP 1 Score: 159 bits (403), Expect = 6.220e-49
Identity = 75/88 (85.23%), Postives = 82/88 (93.18%), Query Frame = 1
Query:   37 IDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 300
            I+ +IHGRLRLGVMAYLS+VNPASFPEL  KTGATNGNLSTHLTKLETAGF+RQEKGY+GKRPQTLVHLTPAGR AWIEYL AM+ +L
Sbjct:    8 INGIIHGRLRLGVMAYLSSVNPASFPELQQKTGATNGNLSTHLTKLETAGFIRQEKGYSGKRPQTLVHLTPAGRDAWIEYLGAMRDML 95          
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A0R2U6U5_9GAMM (Transcriptional regulator n=1 Tax=SAR92 bacterium BACL26 MAG-121220-bin70 TaxID=1655626 RepID=A0A0R2U6U5_9GAMM)

HSP 1 Score: 157 bits (396), Expect = 8.740e-48
Identity = 73/100 (73.00%), Postives = 89/100 (89.00%), Query Frame = 1
Query:    1 MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 300
            MS +  +I+I  ID+VIHGRLRLG+MAYLSAV+PASFPEL+ KTG TNGNLSTHLTKLE++G+V QEKGY+GK+PQTLV+LT AGR+AWI YL+AM+ LL
Sbjct:    1 MSTNKQEINIDGIDEVIHGRLRLGIMAYLSAVDPASFPELLGKTGTTNGNLSTHLTKLESSGYVTQEKGYSGKKPQTLVYLTKAGREAWIAYLNAMRTLL 100          
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A420WFQ1_9PROT (Transcriptional regulator n=1 Tax=Litorimonas taeanensis TaxID=568099 RepID=A0A420WFQ1_9PROT)

HSP 1 Score: 157 bits (396), Expect = 1.310e-47
Identity = 69/96 (71.88%), Postives = 86/96 (89.58%), Query Frame = 1
Query:   19 DIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLGH 306
            ++D+ A+DD IHGRLR+G+MAYLSAVNPASFPEL++KTG +NGNLSTHLTKLETAGFV+ EKG+ GKRPQTLV++T  GR+AWI+YLD M+ +L H
Sbjct:   21 ELDLDAVDDTIHGRLRMGIMAYLSAVNPASFPELLEKTGTSNGNLSTHLTKLETAGFVKIEKGFKGKRPQTLVYVTDKGRQAWIDYLDIMRRILEH 116          
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A8J3G0Q6_9PROT (Transcriptional regulator n=1 Tax=Algimonas arctica TaxID=1479486 RepID=A0A8J3G0Q6_9PROT)

HSP 1 Score: 153 bits (387), Expect = 1.930e-46
Identity = 69/96 (71.88%), Postives = 82/96 (85.42%), Query Frame = 1
Query:   16 PDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALLG 303
            P+ DI  +D+VIHGR+RL VMAYLSAV+PASFPEL +KTG TNGNLSTHLTKLE+A +V  EKGY GKRPQTLVHLT  GRKAW++YL AM+ ++G
Sbjct:    5 PEFDISQVDEVIHGRIRLAVMAYLSAVSPASFPELTEKTGTTNGNLSTHLTKLESANYVELEKGYKGKRPQTLVHLTATGRKAWLKYLSAMRDIIG 100          
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Match: A0A2G2IYZ2_9PROT (Transcriptional regulator n=1 Tax=Robiginitomaculum sp. TaxID=2030823 RepID=A0A2G2IYZ2_9PROT)

HSP 1 Score: 146 bits (368), Expect = 1.350e-43
Identity = 68/88 (77.27%), Postives = 75/88 (85.23%), Query Frame = 1
Query:   37 IDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGNLSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL 300
            I+D+IHGRLRLGVMAYLS  +P SFPEL+  T ATNGNLSTHLTKLETAGF+ QEKGY GKRPQTLVHLT  GR AWIEYL AM+ +L
Sbjct:    8 INDIIHGRLRLGVMAYLSTASPVSFPELLKVTEATNGNLSTHLTKLETAGFIHQEKGYKGKRPQTLVHLTDEGRSAWIEYLKAMRLML 95          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig104729.652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001671ECC71.810e-6187.50transcriptional regulator n=1 Tax=Litorimonas clad... [more]
UPI0003FF39431.090e-5278.22transcriptional regulator n=1 Tax=Hellea balneolen... [more]
UPI000362296E2.330e-5279.21transcriptional regulator n=1 Tax=Robiginitomaculu... [more]
A0A520MC24_9GAMM2.170e-5075.00Transcriptional regulator n=1 Tax=SAR92 clade bact... [more]
A0A2G2G7A4_9PROT4.520e-4977.42Transcriptional regulator n=1 Tax=Robiginitomaculu... [more]
A0A520XMN2_9ACTN6.220e-4985.23Transcriptional regulator n=2 Tax=Bacteria TaxID=2... [more]
A0A0R2U6U5_9GAMM8.740e-4873.00Transcriptional regulator n=1 Tax=SAR92 bacterium ... [more]
A0A420WFQ1_9PROT1.310e-4771.88Transcriptional regulator n=1 Tax=Litorimonas taea... [more]
A0A8J3G0Q6_9PROT1.930e-4671.88Transcriptional regulator n=1 Tax=Algimonas arctic... [more]
A0A2G2IYZ2_9PROT1.350e-4377.27Transcriptional regulator n=1 Tax=Robiginitomaculu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig104729contigP-canaliculata_contig104729:226..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score168.3
Seed ortholog evalue1.9e-39
Seed eggNOG ortholog1121948.AUAC01000004_gene210
Preferred nameMA20_05735
EggNOG free text desc.Winged helix DNA-binding domain
EggNOG OGs1RJ4D@1224,2U9KA@28211,43Y57@69657,COG1846@1,COG1846@2
COG Functional cat.K
Best tax levelHyphomonadaceae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815618.2943618-CDS-P-canaliculata_contig104729:225..5491622815618.2943618-CDS-P-canaliculata_contig104729:225..549Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104729 226..549 +
1693494169.0299237-CDS-P-canaliculata_contig104729:225..5491693494169.0299237-CDS-P-canaliculata_contig104729:225..549Pelvetia canaliculata dioeciousCDSP-canaliculata_contig104729 226..549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig104729.652.1prot_P-canaliculata_contig104729.652.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig104729 226..549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig104729.652.1

>prot_P-canaliculata_contig104729.652.1 ID=prot_P-canaliculata_contig104729.652.1|Name=mRNA_P-canaliculata_contig104729.652.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=108bp
MSGDNPDIDIGAIDDVIHGRLRLGVMAYLSAVNPASFPELIDKTGATNGN
LSTHLTKLETAGFVRQEKGYNGKRPQTLVHLTPAGRKAWIEYLDAMKALL
GHSISNG*
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mRNA from alignment at P-canaliculata_contig104729:226..549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig104729.652.1 ID=mRNA_P-canaliculata_contig104729.652.1|Name=mRNA_P-canaliculata_contig104729.652.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at P-canaliculata_contig104729:226..549+ (Pelvetia canaliculata dioecious)
ATGTCAGGCGATAATCCCGACATAGACATTGGCGCGATTGATGATGTCAT TCACGGACGACTTCGACTTGGCGTGATGGCCTATCTGTCCGCCGTCAATC CGGCCAGCTTTCCGGAGTTGATTGACAAGACCGGCGCGACGAATGGTAAT CTGTCGACCCATTTGACCAAGCTAGAGACAGCCGGATTTGTGCGGCAGGA AAAAGGGTATAACGGAAAACGTCCGCAAACCCTCGTTCACCTCACGCCCG CCGGCCGCAAGGCTTGGATTGAATATCTCGACGCCATGAAAGCGCTGCTC GGCCATTCAATTTCAAACGGTTGA
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Coding sequence (CDS) from alignment at P-canaliculata_contig104729:226..549+

>mRNA_P-canaliculata_contig104729.652.1 ID=mRNA_P-canaliculata_contig104729.652.1|Name=mRNA_P-canaliculata_contig104729.652.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at P-canaliculata_contig104729:226..549+ (Pelvetia canaliculata dioecious)
ATGTCAGGCGATAATCCCGACATAGACATTGGCGCGATTGATGATGTCAT
TCACGGACGACTTCGACTTGGCGTGATGGCCTATCTGTCCGCCGTCAATC
CGGCCAGCTTTCCGGAGTTGATTGACAAGACCGGCGCGACGAATGGTAAT
CTGTCGACCCATTTGACCAAGCTAGAGACAGCCGGATTTGTGCGGCAGGA
AAAAGGGTATAACGGAAAACGTCCGCAAACCCTCGTTCACCTCACGCCCG
CCGGCCGCAAGGCTTGGATTGAATATCTCGACGCCATGAAAGCGCTGCTC
GGCCATTCAATTTCAAACGGTTGAATGTCAGGCGATAATCCCGACATAGA
CATTGGCGCGATTGATGATGTCATTCACGGACGACTTCGACTTGGCGTGA
TGGCCTATCTGTCCGCCGTCAATCCGGCCAGCTTTCCGGAGTTGATTGAC
AAGACCGGCGCGACGAATGGTAATCTGTCGACCCATTTGACCAAGCTAGA
GACAGCCGGATTTGTGCGGCAGGAAAAAGGGTATAACGGAAAACGTCCGC
AAACCCTCGTTCACCTCACGCCCGCCGGCCGCAAGGCTTGGATTGAATAT
CTCGACGCCATGAAAGCGCTGCTCGGCCATTCAATTTCAAACGGTTGA
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