mRNA_P-canaliculata_contig100112.62.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100112.62.1
Unique NamemRNA_P-canaliculata_contig100112.62.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100112.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100112contigP-canaliculata_contig100112:180..1034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size855
Cds size855
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815574.0432608-CDS-P-canaliculata_contig100112:179..10341622815574.0432608-CDS-P-canaliculata_contig100112:179..1034Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100112 180..1034 +
1693494144.9659982-CDS-P-canaliculata_contig100112:179..10341693494144.9659982-CDS-P-canaliculata_contig100112:179..1034Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100112 180..1034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100112.62.1prot_P-canaliculata_contig100112.62.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100112 180..1034 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100112.62.1

>prot_P-canaliculata_contig100112.62.1 ID=prot_P-canaliculata_contig100112.62.1|Name=mRNA_P-canaliculata_contig100112.62.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=285bp
GTVLFLETLSEGTAEVKVIDGNISNTQGGLDVVLVTISNDKKLDGKTRRS
RTDNQGIARFVKLVPGRTYVAKVVKKSKLTDGTQGTQGSGEELLLTNSES
FSLPKGVGASVLLSISEKGPAPKPSRNAGSDAAASPNANRPAATRPPRQD
GVPPMLQDPRKVSGIARGEEKDPAGQLTVRAVQGTFRASEAGLTADFPRD
TPIYLIGYLSDGSVHVETQPIKDDGRATFSGLERGTASYYVASVFPRGDR
YDRLLSKPFQMPPQIGMRVMLAGEAIASKADGVDD
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mRNA from alignment at P-canaliculata_contig100112:180..1034+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100112.62.1 ID=mRNA_P-canaliculata_contig100112.62.1|Name=mRNA_P-canaliculata_contig100112.62.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=855bp|location=Sequence derived from alignment at P-canaliculata_contig100112:180..1034+ (Pelvetia canaliculata dioecious)
GGGACCGTGCTGTTTCTAGAAACACTTAGCGAGGGCACTGCTGAAGTCAA
AGTTATCGACGGAAATATCAGCAATACCCAGGGTGGTCTTGACGTTGTTC
TGGTCACAATTTCAAACGATAAAAAGCTCGACGGGAAAACGCGCCGGTCG
CGAACAGATAACCAGGGTATCGCCCGCTTCGTAAAACTTGTTCCGGGTCG
AACCTACGTGGCCAAGGTCGTAAAGAAATCTAAACTCACAGACGGCACCC
AAGGCACCCAGGGCAGCGGGGAAGAACTGCTCCTGACCAATAGCGAATCG
TTTAGTTTGCCAAAAGGCGTCGGAGCAAGCGTTCTGCTTTCGATTTCGGA
GAAAGGCCCCGCTCCTAAACCTTCCAGAAATGCCGGCTCAGATGCCGCGG
CATCACCAAACGCAAACCGCCCCGCTGCAACAAGGCCGCCTCGGCAAGAC
GGGGTTCCACCGATGTTACAGGACCCGCGCAAGGTCAGCGGTATCGCCAG
GGGAGAGGAAAAAGATCCAGCCGGCCAGCTCACCGTTCGAGCGGTACAGG
GAACGTTTCGCGCGAGCGAAGCGGGGTTGACTGCCGACTTTCCCAGAGAC
ACACCCATCTATTTGATTGGATACCTTTCCGACGGATCGGTGCACGTTGA
AACCCAGCCCATTAAAGATGATGGTCGTGCGACCTTTTCAGGTCTCGAGC
GCGGCACGGCTTCCTACTACGTAGCTAGCGTATTTCCTCGTGGCGATAGA
TACGACCGTCTTCTCAGTAAGCCATTTCAGATGCCTCCTCAAATCGGTAT
GCGCGTTATGCTTGCAGGAGAAGCTATCGCCTCAAAAGCAGATGGGGTTG
ATGAT
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Coding sequence (CDS) from alignment at P-canaliculata_contig100112:180..1034+

>mRNA_P-canaliculata_contig100112.62.1 ID=mRNA_P-canaliculata_contig100112.62.1|Name=mRNA_P-canaliculata_contig100112.62.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1710bp|location=Sequence derived from alignment at P-canaliculata_contig100112:180..1034+ (Pelvetia canaliculata dioecious)
GGGACCGTGCTGTTTCTAGAAACACTTAGCGAGGGCACTGCTGAAGTCAA
AGTTATCGACGGAAATATCAGCAATACCCAGGGTGGTCTTGACGTTGTTC
TGGTCACAATTTCAAACGATAAAAAGCTCGACGGGAAAACGCGCCGGTCG
CGAACAGATAACCAGGGTATCGCCCGCTTCGTAAAACTTGTTCCGGGTCG
AACCTACGTGGCCAAGGTCGTAAAGAAATCTAAACTCACAGACGGCACCC
AAGGCACCCAGGGCAGCGGGGAAGAACTGCTCCTGACCAATAGCGAATCG
TTTAGTTTGCCAAAAGGCGTCGGAGCAAGCGTTCTGCTTTCGATTTCGGA
GAAAGGCCCCGCTCCTAAACCTTCCAGAAATGCCGGCTCAGATGCCGCGG
CATCACCAAACGCAAACCGCCCCGCTGCAACAAGGCCGCCTCGGCAAGAC
GGGGTTCCACCGATGTTACAGGACCCGCGCAAGGTCAGCGGTATCGCCAG
GGGAGAGGAAAAAGATCCAGCCGGCCAGCTCACCGTTCGAGCGGTACAGG
GAACGTTTCGCGCGAGCGAAGCGGGGTTGACTGCCGACTTTCCCAGAGAC
ACACCCATCTATTTGATTGGATACCTTTCCGACGGATCGGTGCACGTTGA
AACCCAGCCCATTAAAGATGATGGTCGTGCGACCTTTTCAGGTCTCGAGC
GCGGCACGGCTTCCTACTACGTAGCTAGCGTATTTCCTCGTGGCGATAGA
TACGACCGTCTTCTCAGTAAGCCATTTCAGATGCCTCCTCAAATCGGTAT
GCGCGTTATGCTTGCAGGAGAAGCTATCGCCTCAAAAGCAGATGGGGTTG
ATGATGGGACCGTGCTGTTTCTAGAAACACTTAGCGAGGGCACTGCTGAA
GTCAAAGTTATCGACGGAAATATCAGCAATACCCAGGGTGGTCTTGACGT
TGTTCTGGTCACAATTTCAAACGATAAAAAGCTCGACGGGAAAACGCGCC
GGTCGCGAACAGATAACCAGGGTATCGCCCGCTTCGTAAAACTTGTTCCG
GGTCGAACCTACGTGGCCAAGGTCGTAAAGAAATCTAAACTCACAGACGG
CACCCAAGGCACCCAGGGCAGCGGGGAAGAACTGCTCCTGACCAATAGCG
AATCGTTTAGTTTGCCAAAAGGCGTCGGAGCAAGCGTTCTGCTTTCGATT
TCGGAGAAAGGCCCCGCTCCTAAACCTTCCAGAAATGCCGGCTCAGATGC
CGCGGCATCACCAAACGCAAACCGCCCCGCTGCAACAAGGCCGCCTCGGC
AAGACGGGGTTCCACCGATGTTACAGGACCCGCGCAAGGTCAGCGGTATC
GCCAGGGGAGAGGAAAAAGATCCAGCCGGCCAGCTCACCGTTCGAGCGGT
ACAGGGAACGTTTCGCGCGAGCGAAGCGGGGTTGACTGCCGACTTTCCCA
GAGACACACCCATCTATTTGATTGGATACCTTTCCGACGGATCGGTGCAC
GTTGAAACCCAGCCCATTAAAGATGATGGTCGTGCGACCTTTTCAGGTCT
CGAGCGCGGCACGGCTTCCTACTACGTAGCTAGCGTATTTCCTCGTGGCG
ATAGATACGACCGTCTTCTCAGTAAGCCATTTCAGATGCCTCCTCAAATC
GGTATGCGCGTTATGCTTGCAGGAGAAGCTATCGCCTCAAAAGCAGATGG
GGTTGATGAT
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