mRNA_P-canaliculata_contig10011.60.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10011.60.1
Unique NamemRNA_P-canaliculata_contig10011.60.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: UPI0013EBC1F3 (hypothetical protein n=1 Tax=unclassified Paludisphaera TaxID=2624067 RepID=UPI0013EBC1F3)

HSP 1 Score: 54.3 bits (129), Expect = 5.760e-6
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = 1 
Query:    4 ADLDLHVFEPGGEEVYFGERLGDVGIMSD-DSTEGFGSET-YTLL-----NGLAIDEDEILGTYRAWVT--NGQPGTP----WVMTARLAGEL 243
            ADLDLHV EPGG+E+Y+ ER GD G   D D+T GFG E  Y L+     +G  I  D   G YR +V+   G  G P    W +  + AG +
Sbjct:  199 ADLDLHVIEPGGKEIYWEERRGDQGGELDVDNTRGFGPENIYWLVETGKDDGSQIKGDGPPGVYRWFVSYYGGFGGIPKPTQWQVRIKHAGHV 291
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BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: UPI001BE1B650 (hypothetical protein n=1 Tax=Dyadobacter sp. CECT 9275 TaxID=2822344 RepID=UPI001BE1B650)

HSP 1 Score: 52.4 bits (124), Expect = 2.480e-5
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 1 
Query:    1 NADLDLHVFEPGGEEVYFGERLGDV--GIMSDDSTEGFGSETYTLLNGLAIDEDEILGTYRAWVT--NGQPGTPWVMTARLA 234
            N D+DLHV EPGGEE+YFG++  +V  G +  D T+G+G E     N  A D     G Y+ +V    G P T + +T   A
Sbjct:  182 NTDIDLHVIEPGGEEIYFGDKRSNVTGGQLDRDDTDGYGPENIFWEN--APD-----GEYKVFVHYYGGTPRTRYFITINTA 256
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BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A2N7ND05_9VIBR (Uncharacterized protein n=5 Tax=Vibrio TaxID=662 RepID=A0A2N7ND05_9VIBR)

HSP 1 Score: 52.0 bits (123), Expect = 4.000e-5
Identity = 31/86 (36.05%), Postives = 44/86 (51.16%), Query Frame = 1 
Query:    4 ADLDLHVFEPGGEEVYFGERLGDVGIMSDDSTEGFGSETYTLLNGLAIDEDEI-LGTYRAWVTN-----GQPGTPWVMTARLAGEL 243
             D+DLH FEP G +VY+  R+G+VG +  D+T G+G E Y        D D + LG Y   V N     G+  T  + T  ++  L
Sbjct:  315 GDVDLHTFEPNGMQVYYQNRVGNVGELDVDNTSGYGPEHYFA----TCDRDSLELGVYSIGVNNYARAEGRIATVQISTGSISDVL 396
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BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A6U3UJW2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3UJW2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 4.140e-5
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    1 NADLDLHVFEPGGEEVYFGERLGDVG-IMSDDSTEGFGSETYTL 129
            N D+DLHV EP G E+Y+G R  D+G  +S D T+G+G E Y L
Sbjct:   41 NTDIDLHVKEPSGNEIYYGNRESDIGGNLSRDFTKGYGPEVYIL 84
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BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A1M5TDE1_9FLAO (TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region n=1 Tax=Winogradskyella jejuensis TaxID=1089305 RepID=A0A1M5TDE1_9FLAO)

HSP 1 Score: 52.0 bits (123), Expect = 4.490e-5
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    1 NADLDLHVFEPGGEEVYFGERLGDVG-IMSDDSTEGFGSETYTLLN 135
            N DLDLH+  P GE++Y+G+     G I+SDD TEG+G ET+ + N
Sbjct: 1035 NTDLDLHIKNPAGEDLYYGKTTSRFGGIISDDMTEGYGPETFKIKN 1080
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BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A1U7GDE0_9BACT (Uncharacterized protein n=1 Tax=Planctomycetales bacterium 71-10 TaxID=1895807 RepID=A0A1U7GDE0_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 4.800e-5
Identity = 42/119 (35.29%), Postives = 59/119 (49.58%), Query Frame = 1 
Query:    1 NADLDLHVFEPGGEEVYFGERLGDVGIMSD-DSTEGFGSETYTLL------NGLAIDEDEILGTYRAWVT--NGQPGTP----WVMTARLAGELEWTIYGVIPANYSYDDNRTFYPVTV 318
            + DLDLHV EPGG+E+Y+ ER GD G   D D+T G+G E    L      +G  +  D   G Y+ +V    G  G P    W +  + AG +  T+ G + A    D+    Y +TV
Sbjct:  169 DVDLDLHVVEPGGKEIYWEERKGDHGGELDVDNTRGYGPENIYWLTETDDPDGPEVRGDGPPGVYKWFVVYYGGFGGIPKPTQWQVRIKHAGRVS-TVRGKLRA---LDERTKVYTLTV 283
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BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A850BLY1_9DELT (VWA domain-containing protein n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850BLY1_9DELT)

HSP 1 Score: 51.6 bits (122), Expect = 6.060e-5
Identity = 25/49 (51.02%), Postives = 31/49 (63.27%), Query Frame = 1 
Query:    1 NADLDLHVFEPGGEEVYFGER-LGDVGIMSDDSTEGFGSETYTLLNGLA 144
            N D+DLHV EP GEE Y+G R     G ++ D T+G+G E YTL  G A
Sbjct:  891 NTDVDLHVIEPSGEECYYGHRRTRSGGSLTQDVTQGYGPEMYTLTGGPA 939
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BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: UPI001F16BF7A (putative Ig domain-containing protein n=1 Tax=unclassified Nocardioides TaxID=2615069 RepID=UPI001F16BF7A)

HSP 1 Score: 51.2 bits (121), Expect = 7.830e-5
Identity = 34/98 (34.69%), Postives = 44/98 (44.90%), Query Frame = 1 
Query:    4 ADLDLHVFEPGGEEVYFGERLGDVGIMSD-DSTEGFGSET-------YTLLNGLAIDEDEILGTYRA----WVTNGQPGTPWVMTARLAGELEWTIYG 261
            AD+DLHV +P GEE+Y+G R  D G   D D+  G G +        Y   NG  +      GTY      W   G    PW +T R+ G +   I G
Sbjct:  480 ADMDLHVTDPAGEEIYYGNRTSDSGGQLDRDANAGCGEQNPSPVENVYWPPNGAPV------GTYAVQVVTWSACGTVSQPWHLTVRVRGAVVLDISG 571
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BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A0Q8VQ02_9ACTN (IPT/TIG domain-containing protein n=2 Tax=unclassified Nocardioides TaxID=2615069 RepID=A0A0Q8VQ02_9ACTN)

HSP 1 Score: 51.2 bits (121), Expect = 8.040e-5
Identity = 34/98 (34.69%), Postives = 44/98 (44.90%), Query Frame = 1 
Query:    4 ADLDLHVFEPGGEEVYFGERLGDVGIMSD-DSTEGFGSET-------YTLLNGLAIDEDEILGTYRA----WVTNGQPGTPWVMTARLAGELEWTIYG 261
            AD+DLHV +P GEE+Y+G R  D G   D D+  G G +        Y   NG  +      GTY      W   G    PW +T R+ G +   I G
Sbjct:  632 ADMDLHVTDPAGEEIYYGNRTSDSGGQLDRDANAGCGEQNPSPVENVYWPPNGAPV------GTYAVQVVTWSACGTVSQPWHLTVRVRGAVVLDISG 723
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BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Match: A0A7X7WA44_9THEM (Uncharacterized protein (Fragment) n=1 Tax=Thermotogaceae bacterium TaxID=2268206 RepID=A0A7X7WA44_9THEM)

HSP 1 Score: 50.1 bits (118), Expect = 8.180e-5
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 NADLDLHVFEPGGEEVYFGERLGDVGIMSDDSTEGFGSETYTLLNGLAIDEDEILGTYR 177
            +AD+DLHV+EP  E VY+ E +   G +  D T+G+G E YTLL      E  I G YR
Sbjct:   90 HADIDLHVYEPDEEHVYY-ENMKGAGELDRDDTDGYGPEHYTLLR-----ERAIYGDYR 142
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10011.60.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
UPI0013EBC1F35.760e-643.01hypothetical protein n=1 Tax=unclassified Paludisp... [more]
UPI001BE1B6502.480e-540.24hypothetical protein n=1 Tax=Dyadobacter sp. CECT ... [more]
A0A2N7ND05_9VIBR4.000e-536.05Uncharacterized protein n=5 Tax=Vibrio TaxID=662 R... [more]
A0A6U3UJW2_9STRA4.140e-552.27Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1M5TDE1_9FLAO4.490e-550.00TonB-dependent outer membrane receptor, SusC/RagA ... [more]
A0A1U7GDE0_9BACT4.800e-535.29Uncharacterized protein n=1 Tax=Planctomycetales b... [more]
A0A850BLY1_9DELT6.060e-551.02VWA domain-containing protein n=1 Tax=Polyangiacea... [more]
UPI001F16BF7A7.830e-534.69putative Ig domain-containing protein n=1 Tax=uncl... [more]
A0A0Q8VQ02_9ACTN8.040e-534.69IPT/TIG domain-containing protein n=2 Tax=unclassi... [more]
A0A7X7WA44_9THEM8.180e-545.76Uncharacterized protein (Fragment) n=1 Tax=Thermot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10011contigP-canaliculata_contig10011:5768..6787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue7.2e-12
Seed eggNOG ortholog2880.D7G3X5
KEGG koko:K22017
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4291@1,KOG4291@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size398
Cds size396
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10011.60.1prot_P-canaliculata_contig10011.60.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10011 5768..6787 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.9210043-CDS-P-canaliculata_contig10011:5767..58361622815573.9210043-CDS-P-canaliculata_contig10011:5767..5836Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10011 5768..5836 +
1693494144.8725007-CDS-P-canaliculata_contig10011:5767..58361693494144.8725007-CDS-P-canaliculata_contig10011:5767..5836Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10011 5768..5836 +
1622815573.9366055-CDS-P-canaliculata_contig10011:6035..63241622815573.9366055-CDS-P-canaliculata_contig10011:6035..6324Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10011 6036..6324 +
1693494144.8974502-CDS-P-canaliculata_contig10011:6035..63241693494144.8974502-CDS-P-canaliculata_contig10011:6035..6324Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10011 6036..6324 +
1622815573.9496803-CDS-P-canaliculata_contig10011:6749..67871622815573.9496803-CDS-P-canaliculata_contig10011:6749..6787Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10011 6750..6787 +
1693494144.909598-CDS-P-canaliculata_contig10011:6749..67871693494144.909598-CDS-P-canaliculata_contig10011:6749..6787Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10011 6750..6787 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10011.60.1

>prot_P-canaliculata_contig10011.60.1 ID=prot_P-canaliculata_contig10011.60.1|Name=mRNA_P-canaliculata_contig10011.60.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=132bp
NADLDLHVFEPGGEEVYFGERLGDVGIMSDDSTEGFGSETYTLLNGLAID
EDEILGTYRAWVTNGQPGTPWVMTARLAGELEWTIYGVIPANYSYDDNRT
FYPVTVTEYTESTCDIDLYGTCPEGSFSDDGT
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mRNA from alignment at P-canaliculata_contig10011:5768..6787+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10011.60.1 ID=mRNA_P-canaliculata_contig10011.60.1|Name=mRNA_P-canaliculata_contig10011.60.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1020bp|location=Sequence derived from alignment at P-canaliculata_contig10011:5768..6787+ (Pelvetia canaliculata dioecious)
AATGCCGATCTCGACCTTCACGTTTTCGAGCCCGGAGGGGAAGAGGTCTA
CTTCGGCGAAAGACTCGGGGTGAGCCAGCAGCTTCGAGCGGTTAACCACC
ATCGTTGGCATCCGCGATACAACTACCCGCTACGGATAACACGATCGCTT
CCTCCCGGCAAAATAAAGGAAGCTTTTATAAATTTATTTCTTGTTCAGCC
AACACCAAGAACATTACAAGAATGTTAAAAATAGAGAAGGTGCGTACTGT
CCTCGTGACAACCTCCAGGACGTTGGAATCATGAGCGACGACTCTACAGA
GGGTTTCGGAAGTGAGACGTACACTCTCTTGAACGGCCTCGCTATCGACG
AGGACGAGATTCTCGGGACTTATAGGGCGTGGGTCACCAACGGGCAGCCT
GGAACGCCATGGGTCATGACCGCTAGGCTAGCTGGCGAGCTTGAGTGGAC
TATTTATGGTGTCATCCCTGCAAACTATTCCTATGACGATAATCGTACCT
TCTATCCGGTCACTGTGACGGAGTATACCGAGAGCACCTGCGACATCGAC
CTCTACGGTAAGAAAATAAACATGATGAGTGTAGTCATGTAAAAATCCAA
CGATACAACCTCCCATCGGAAAGATCATGTTCTGTCACTCGACGTTTTCG
GGGATAAAACCCTTCACACCCCTCCCTCCCCACCAGTATGCCGCCGTTTC
TCTAGGTGTCGTGTGAGCATGCCCCCCCCCCCCCCCGCCCCCCCCCCCGG
GCGCGCGGCTTTCCGACCACCGCCCGCATACAGGCGAACCATGGGGTGNN
NNNNNNNNGGGGAAAAAACCCCCCCCCCCCCCCCCCCCCCCCCCGTTTCC
CCCCGTTTTTTCAGGGGCGGGGTGACCAGGCCCCCCCCCCCCCCCCGCCC
CCCCGGGCGGGAAAGTATCGTTTGCAATCACCACACGATTCGAGGCTACA
AATGGTATGGCTTTTTGCACCGCCCCACGCAGGAACTTGCCCGGAAGGCT
CTTTTTCGGATGACGGCACC
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Coding sequence (CDS) from alignment at P-canaliculata_contig10011:5768..6787+

>mRNA_P-canaliculata_contig10011.60.1 ID=mRNA_P-canaliculata_contig10011.60.1|Name=mRNA_P-canaliculata_contig10011.60.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at P-canaliculata_contig10011:5768..6787+ (Pelvetia canaliculata dioecious)
AATGCCGATCTCGACCTTCACGTTTTCGAGCCCGGAGGGGAAGAGGTCTA
CTTCGGCGAAAGACTCGGGAATGCCGATCTCGACCTTCACGTTTTCGAGC
CCGGAGGGGAAGAGGTCTACTTCGGCGAAAGACTCGGGGACGTTGGAATC
ATGAGCGACGACTCTACAGAGGGTTTCGGAAGTGAGACGTACACTCTCTT
GAACGGCCTCGCTATCGACGAGGACGAGATTCTCGGGACTTATAGGGCGT
GGGTCACCAACGGGCAGCCTGGAACGCCATGGGTCATGACCGCTAGGCTA
GCTGGCGAGCTTGAGTGGACTATTTATGGTGTCATCCCTGCAAACTATTC
CTATGACGATAATCGTACCTTCTATCCGGTCACTGTGACGGAGTATACCG
AGAGCACCTGCGACATCGACCTCTACGGACGTTGGAATCATGAGCGACGA
CTCTACAGAGGGTTTCGGAAGTGAGACGTACACTCTCTTGAACGGCCTCG
CTATCGACGAGGACGAGATTCTCGGGACTTATAGGGCGTGGGTCACCAAC
GGGCAGCCTGGAACGCCATGGGTCATGACCGCTAGGCTAGCTGGCGAGCT
TGAGTGGACTATTTATGGTGTCATCCCTGCAAACTATTCCTATGACGATA
ATCGTACCTTCTATCCGGTCACTGTGACGGAGTATACCGAGAGCACCTGC
GACATCGACCTCTACGGAACTTGCCCGGAAGGCTCTTTTTCGGATGACGG
CACCGAACTTGCCCGGAAGGCTCTTTTTCGGATGACGGCACC
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