mRNA_P-canaliculata_contig100100.59.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100100.59.1
Unique NamemRNA_P-canaliculata_contig100100.59.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100100.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100100contigP-canaliculata_contig100100:249..823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size531
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100100.59.1prot_P-canaliculata_contig100100.59.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100100 436..815 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.8577046-UTR-P-canaliculata_contig100100:248..4351622815573.8577046-UTR-P-canaliculata_contig100100:248..435Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100100 249..435 -
1693494144.8062937-UTR-P-canaliculata_contig100100:248..4351693494144.8062937-UTR-P-canaliculata_contig100100:248..435Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100100 249..435 -
1622815573.888759-UTR-P-canaliculata_contig100100:815..8231622815573.888759-UTR-P-canaliculata_contig100100:815..823Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100100 816..823 -
1693494144.8408654-UTR-P-canaliculata_contig100100:815..8231693494144.8408654-UTR-P-canaliculata_contig100100:815..823Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100100 816..823 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.868128-CDS-P-canaliculata_contig100100:435..5981622815573.868128-CDS-P-canaliculata_contig100100:435..598Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100100 436..598 -
1693494144.8164074-CDS-P-canaliculata_contig100100:435..5981693494144.8164074-CDS-P-canaliculata_contig100100:435..598Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100100 436..598 -
1622815573.877995-CDS-P-canaliculata_contig100100:642..8151622815573.877995-CDS-P-canaliculata_contig100100:642..815Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100100 643..815 -
1693494144.8279314-CDS-P-canaliculata_contig100100:642..8151693494144.8279314-CDS-P-canaliculata_contig100100:642..815Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100100 643..815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100100.59.1

>prot_P-canaliculata_contig100100.59.1 ID=prot_P-canaliculata_contig100100.59.1|Name=mRNA_P-canaliculata_contig100100.59.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=112bp
MAARVKEEEKASGYRQRNRDTEEADKVEVSPGVTVASLRRFRSALIGPTQ
GSPKRRQLCYAFGCMVVIRGGYRMACGWHYTKLSLSSALLQFFSGMCFVF
DTVPLFLSFFV*
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mRNA from alignment at P-canaliculata_contig100100:249..823-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100100.59.1 ID=mRNA_P-canaliculata_contig100100.59.1|Name=mRNA_P-canaliculata_contig100100.59.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=575bp|location=Sequence derived from alignment at P-canaliculata_contig100100:249..823- (Pelvetia canaliculata dioecious)
GTAGGTTTATGGCCGCGCGGGTGAAGGAAGAGGAAAAGGCGTCCGGATAC
CGGCAGAGGAATAGAGACACGGAAGAGGCGGACAAGGTTGAGGTTTCACC
TGGGGTGACTGTAGCAAGCTTGAGACGTTTTAGATCCGCGTTGATTGGAC
CAACCCAAGGATCCCCTAAGCGACGTCAACTGTGCCGATAGAGAAACTTG
AAACCCTGAGGGTACGGAGTTGTAGATGCTACGCGTTTGGGTGCATGGTT
GTGATCCGGGGAGGGTACCGGATGGCTTGCGGCTGGCACTATACCAAACT
CTCTCTATCGAGTGCCCTCCTTCAATTTTTTTCTGGCATGTGCTTTGTTT
TTGATACTGTTCCTCTATTTTTATCGTTTTTTGTTTAATTTTTGTTTTCA
TGCTTTCGTTGGAGCTTTGTAGATGTTTCTCGGATCTCTTTCTGCCCAGC
AGACCACGTATCGGATTGGCAACCACTTATATTACTGGGTATAGTTCAGG
CCCGATCGGTTAATGTTAAAAGACACAACATGATCATGTTACTGTAGTCC
TGATCCCTTACTCGAAATACATTCT
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Coding sequence (CDS) from alignment at P-canaliculata_contig100100:249..823-

>mRNA_P-canaliculata_contig100100.59.1 ID=mRNA_P-canaliculata_contig100100.59.1|Name=mRNA_P-canaliculata_contig100100.59.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at P-canaliculata_contig100100:249..823- (Pelvetia canaliculata dioecious)
ATGGCCGCGCGGGTGAAGGAAGAGGAAAAGGCGTCCGGATACCGGCAGAG
GAATAGAGACACGGAAGAGGCGGACAAGGTTGAGGTTTCACCTGGGGTGA
CTGTAGCAAGCTTGAGACGTTTTAGATCCGCGTTGATTGGACCAACCCAA
GGATCCCCTAAGCGACGTCAACTATGGCCGCGCGGGTGAAGGAAGAGGAA
AAGGCGTCCGGATACCGGCAGAGGAATAGAGACACGGAAGAGGCGGACAA
GGTTGAGGTTTCACCTGGGGTGACTGTAGCAAGCTTGAGACGTTTTAGAT
CCGCGTTGATTGGACCAACCCAAGGATCCCCTAAGCGACGTCAACTATGC
TACGCGTTTGGGTGCATGGTTGTGATCCGGGGAGGGTACCGGATGGCTTG
CGGCTGGCACTATACCAAACTCTCTCTATCGAGTGCCCTCCTTCAATTTT
TTTCTGGCATGTGCTTTGTTTTTGATACTGTTCCTCTATTTTTATCGTTT
TTTGTTTAAATGCTACGCGTTTGGGTGCATGGTTGTGATCCGGGGAGGGT
ACCGGATGGCTTGCGGCTGGCACTATACCAAACTCTCTCTATCGAGTGCC
CTCCTTCAATTTTTTTCTGGCATGTGCTTTGTTTTTGATACTGTTCCTCT
ATTTTTATCGTTTTTTGTTTAA
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