prot_P-canaliculata_contig100057.56.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig100057.56.1
Unique Nameprot_P-canaliculata_contig100057.56.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length109
Homology
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BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 7.700e-36
Identity = 74/110 (67.27%), Postives = 80/110 (72.73%), Query Frame = 0 
Query:    1 MARPSRSNARRSSYKRG-RTKQQMRLLTQLLPIMLADENSDEPTPRYHFVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 109
            MARP RS+ARRSSYKRG +                    SD P  R +FVYRERRSF+TYVRPMV D TF++RFRMDYTDFM LADILRPKLQRDEKMGALRNGAI VEF
Sbjct:    1 MARPPRSHARRSSYKRGQKXXXXXXXXXXXXXXXXXXXXSDAPAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEF 110
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BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.260e-31
Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = 0 
Query:    6 RSNARRSSYKRGRTKQQMRLLTQLLPIMLADENSDEPTPRYHFVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 109
            R+ A R S+ RG+TK++MR L +LL IM+  +  D P  R  FV RERRS++TY +PMV DGTF+ RFRMDYT+F  LAD+LRPKL+R+E+MGALRNG I VEF
Sbjct:    3 RAPASRRSWLRGKTKKRMRQLLELLMIMVLMDEGDPPQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEF 106
[Close]
BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.520e-15
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 0 
Query:   40 DEPTPRYH--FVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 109
            D P+ R     V R RR F TY++PM+ D TF  RFRM+Y DF  L D LRP LQ++EKMG LRNGAI VE+
Sbjct:   39 DPPSMRSRSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEY 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K6M2_9PHAE7.700e-3667.27DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE2.260e-3160.58DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE1.520e-1556.94DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..109
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 36..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..39
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 25..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100057contigP-canaliculata_contig100057:709..1035 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100057.56.1mRNA_P-canaliculata_contig100057.56.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig100057 704..1035 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig100057.56.1 ID=prot_P-canaliculata_contig100057.56.1|Name=mRNA_P-canaliculata_contig100057.56.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp
MARPSRSNARRSSYKRGRTKQQMRLLTQLLPIMLADENSDEPTPRYHFVY
RERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGAL
RNGAISVEF
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