mRNA_P-canaliculata_contig100057.56.1 (mRNA) Pelvetia canaliculata dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 135 bits (340), Expect = 8.010e-36 Identity = 74/110 (67.27%), Postives = 80/110 (72.73%), Query Frame = 3 Query: 6 MARPSRSNARRSSYKRG-RTKQQMRLLTQLLPIMLADENSDEPTPRYHFVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 332
MARP RS+ARRSSYKRG + SD P R +FVYRERRSF+TYVRPMV D TF++RFRMDYTDFM LADILRPKLQRDEKMGALRNGAI VEF
Sbjct: 1 MARPPRSHARRSSYKRGQKXXXXXXXXXXXXXXXXXXXXSDAPAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEF 110
BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 123 bits (309), Expect = 2.350e-31 Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = 3 Query: 21 RSNARRSSYKRGRTKQQMRLLTQLLPIMLADENSDEPTPRYHFVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 332
R+ A R S+ RG+TK++MR L +LL IM+ + D P R FV RERRS++TY +PMV DGTF+ RFRMDYT+F LAD+LRPKL+R+E+MGALRNG I VEF
Sbjct: 3 RAPASRRSWLRGKTKKRMRQLLELLMIMVLMDEGDPPQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEF 106
BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 1.580e-15 Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 3 Query: 123 DEPTPRYH--FVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 332
D P+ R V R RR F TY++PM+ D TF RFRM+Y DF L D LRP LQ++EKMG LRNGAI VE+
Sbjct: 39 DPPSMRSRSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEY 110 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig100057.56.1 >prot_P-canaliculata_contig100057.56.1 ID=prot_P-canaliculata_contig100057.56.1|Name=mRNA_P-canaliculata_contig100057.56.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp MARPSRSNARRSSYKRGRTKQQMRLLTQLLPIMLADENSDEPTPRYHFVYback to top mRNA from alignment at P-canaliculata_contig100057:704..1035+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig100057.56.1 ID=mRNA_P-canaliculata_contig100057.56.1|Name=mRNA_P-canaliculata_contig100057.56.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=332bp|location=Sequence derived from alignment at P-canaliculata_contig100057:704..1035+ (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig100057:704..1035+ >mRNA_P-canaliculata_contig100057.56.1 ID=mRNA_P-canaliculata_contig100057.56.1|Name=mRNA_P-canaliculata_contig100057.56.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at P-canaliculata_contig100057:704..1035+ (Pelvetia canaliculata dioecious)back to top |