mRNA_P-canaliculata_contig100057.56.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100057.56.1
Unique NamemRNA_P-canaliculata_contig100057.56.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 8.010e-36
Identity = 74/110 (67.27%), Postives = 80/110 (72.73%), Query Frame = 3 
Query:    6 MARPSRSNARRSSYKRG-RTKQQMRLLTQLLPIMLADENSDEPTPRYHFVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 332
            MARP RS+ARRSSYKRG +                    SD P  R +FVYRERRSF+TYVRPMV D TF++RFRMDYTDFM LADILRPKLQRDEKMGALRNGAI VEF
Sbjct:    1 MARPPRSHARRSSYKRGQKXXXXXXXXXXXXXXXXXXXXSDAPAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEF 110
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BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.350e-31
Identity = 63/104 (60.58%), Postives = 80/104 (76.92%), Query Frame = 3 
Query:   21 RSNARRSSYKRGRTKQQMRLLTQLLPIMLADENSDEPTPRYHFVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 332
            R+ A R S+ RG+TK++MR L +LL IM+  +  D P  R  FV RERRS++TY +PMV DGTF+ RFRMDYT+F  LAD+LRPKL+R+E+MGALRNG I VEF
Sbjct:    3 RAPASRRSWLRGKTKKRMRQLLELLMIMVLMDEGDPPQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEF 106
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BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.580e-15
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 3 
Query:  123 DEPTPRYH--FVYRERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGALRNGAISVEF 332
            D P+ R     V R RR F TY++PM+ D TF  RFRM+Y DF  L D LRP LQ++EKMG LRNGAI VE+
Sbjct:   39 DPPSMRSRSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEY 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100057.56.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K6M2_9PHAE8.010e-3667.27DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE2.350e-3160.58DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE1.580e-1556.94DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100057contigP-canaliculata_contig100057:704..1035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size332
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.7259736-UTR-P-canaliculata_contig100057:703..7081622815573.7259736-UTR-P-canaliculata_contig100057:703..708Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100057 704..708 +
1693494144.7355263-UTR-P-canaliculata_contig100057:703..7081693494144.7355263-UTR-P-canaliculata_contig100057:703..708Pelvetia canaliculata dioeciousUTRP-canaliculata_contig100057 704..708 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.7374036-CDS-P-canaliculata_contig100057:708..10351622815573.7374036-CDS-P-canaliculata_contig100057:708..1035Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100057 709..1035 +
1693494144.7639966-CDS-P-canaliculata_contig100057:708..10351693494144.7639966-CDS-P-canaliculata_contig100057:708..1035Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100057 709..1035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100057.56.1prot_P-canaliculata_contig100057.56.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100057 709..1035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100057.56.1

>prot_P-canaliculata_contig100057.56.1 ID=prot_P-canaliculata_contig100057.56.1|Name=mRNA_P-canaliculata_contig100057.56.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=109bp
MARPSRSNARRSSYKRGRTKQQMRLLTQLLPIMLADENSDEPTPRYHFVY
RERRSFFTYVRPMVVDGTFKQRFRMDYTDFMDLADILRPKLQRDEKMGAL
RNGAISVEF
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mRNA from alignment at P-canaliculata_contig100057:704..1035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100057.56.1 ID=mRNA_P-canaliculata_contig100057.56.1|Name=mRNA_P-canaliculata_contig100057.56.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=332bp|location=Sequence derived from alignment at P-canaliculata_contig100057:704..1035+ (Pelvetia canaliculata dioecious)
CGACCATGGCGCGCCCTTCTCGCAGCAATGCTCGAAGGAGCTCGTACAAG
AGAGGTCGGACAAAGCAGCAGATGAGGCTGCTGACGCAGCTATTGCCCAT
CATGTTGGCGGACGAAAACAGCGATGAACCCACCCCTCGCTACCACTTCG
TGTATCGCGAGAGGAGGTCGTTCTTCACATACGTGAGACCCATGGTGGTG
GATGGCACGTTCAAGCAGCGTTTCCGCATGGACTACACCGATTTCATGGA
CTTGGCTGACATTCTACGCCCCAAGCTTCAGAGGGACGAGAAGATGGGGG
CTCTGCGCAACGGAGCTATCTCGGTAGAGTTT
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Coding sequence (CDS) from alignment at P-canaliculata_contig100057:704..1035+

>mRNA_P-canaliculata_contig100057.56.1 ID=mRNA_P-canaliculata_contig100057.56.1|Name=mRNA_P-canaliculata_contig100057.56.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at P-canaliculata_contig100057:704..1035+ (Pelvetia canaliculata dioecious)
ATGGCGCGCCCTTCTCGCAGCAATGCTCGAAGGAGCTCGTACAAGAGAGG
TCGGACAAAGCAGCAGATGAGGCTGCTGACGCAGCTATTGCCCATCATGT
TGGCGGACGAAAACAGCGATGAACCCACCCCTCGCTACCACTTCGTGTAT
CGCGAGAGGAGGTCGTTCTTCACATACGTGAGACCCATGGTGGTGGATGG
CACGTTCAAGCAGCGTTTCCGCATGGACTACACCGATTTCATGGACTTGG
CTGACATTCTACGCCCCAAGCTTCAGAGGGACGAGAAGATGGGGGCTCTG
CGCAACGGAGCTATCTCGGTAGAGTTTATGGCGCGCCCTTCTCGCAGCAA
TGCTCGAAGGAGCTCGTACAAGAGAGGTCGGACAAAGCAGCAGATGAGGC
TGCTGACGCAGCTATTGCCCATCATGTTGGCGGACGAAAACAGCGATGAA
CCCACCCCTCGCTACCACTTCGTGTATCGCGAGAGGAGGTCGTTCTTCAC
ATACGTGAGACCCATGGTGGTGGATGGCACGTTCAAGCAGCGTTTCCGCA
TGGACTACACCGATTTCATGGACTTGGCTGACATTCTACGCCCCAAGCTT
CAGAGGGACGAGAAGATGGGGGCTCTGCGCAACGGAGCTATCTCGGTAGA
GTTT
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