mRNA_P-canaliculata_contig100045.54.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig100045.54.1
Unique NamemRNA_P-canaliculata_contig100045.54.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A3B0YBJ9_9ZZZZ (Uncharacterized protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0YBJ9_9ZZZZ)

HSP 1 Score: 83.6 bits (205), Expect = 2.640e-18
Identity = 49/106 (46.23%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   13 QPGSLGANHSCPDPKAGRE-------------TPIWPCSGWGLPCRRCCQNPGALLPHPFTLACEVSFHRRFALCGTFPECAPESAHPAGVTRHPCFVEPGLSSRT 291
            +PGS+  +HS   P A R              +PIW CSGWGLPC RCCQ  GALLPH FTL    +  RR+  CGTF   +P   + A     PC +EPGLSS T
Sbjct:   10 KPGSVEDSHSSGTPVAERLKRPTREQRGPRQCSPIWSCSGWGLPCHRCCQRRGALLPHHFTLTGAYAL-RRYIFCGTFRRLSPPRRYLA-----PCPMEPGLSSMT 109          
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A381NU16_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381NU16_9ZZZZ)

HSP 1 Score: 67.8 bits (164), Expect = 7.020e-13
Identity = 39/64 (60.94%), Postives = 43/64 (67.19%), Query Frame = 2
Query:   29 ERTTPALTQKPGARPLFGLAPGGVCHAGAVARTPVRFYRTLSPLPVKFPSIGGLLSVALSLNAH 220
            ER TP         PLFGLAPGGVC A  V  +PVR YRTLSPLPV   +IGGLLSVALS+ + 
Sbjct:   14 ERATPC--------PLFGLAPGGVCLATPVTGSPVRPYRTLSPLPVPQAAIGGLLSVALSVASR 69          
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A1B2AFP3_9SPHN (Uncharacterized protein n=1 Tax=Tsuneonella dongtanensis TaxID=692370 RepID=A0A1B2AFP3_9SPHN)

HSP 1 Score: 69.3 bits (168), Expect = 2.080e-12
Identity = 43/72 (59.72%), Postives = 46/72 (63.89%), Query Frame = 2
Query:   65 ARPLFGLAPGGVCHAGAVARTPVRFYRTLSPLPVKFPSIGGLLSVALSLNAHPKARIRRALPATLVSWSPDF 280
            ARPLFGLAPGGVC A  V RTPVR YRTLS LP++    GGLLSVALSL           LPA  V+  P F
Sbjct:   67 ARPLFGLAPGGVCRASPVTRTPVRSYRTLSALPLER---GGLLSVALSLR----------LPAAGVTRHPCF 125          
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A1M5BM71_9RHOB (Uncharacterized protein n=1 Tax=Loktanella atrilutea TaxID=366533 RepID=A0A1M5BM71_9RHOB)

HSP 1 Score: 61.2 bits (147), Expect = 2.160e-9
Identity = 40/77 (51.95%), Postives = 47/77 (61.04%), Query Frame = 2
Query:    5 LAANPGLSERTT----PALTQKPGARPLFGLAPGGVCHAGAVARTPVRFYRTLSPLPVKFPSIGGLLSVALSLNAHP 223
            LAANPGLS + +    P+L    GARPLFG+APGG C A +VA   V  Y T+SP P    + G L SVALSL   P
Sbjct:   31 LAANPGLSGQASLPGYPSLDHT-GARPLFGIAPGGACRAASVAGRAVGSYPTVSPFPC---TQGSLFSVALSLGLPP 103          
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A3E0H6S5_9GAMM (Uncharacterized protein n=1 Tax=Paraperlucidibaca baekdonensis TaxID=748120 RepID=A0A3E0H6S5_9GAMM)

HSP 1 Score: 54.7 bits (130), Expect = 6.070e-7
Identity = 34/75 (45.33%), Postives = 37/75 (49.33%), Query Frame = 3
Query:   60 RARDPYLALLRVGFAMQALLPEPRCAFTAPFHPCL*SFLPSAVCSLWHFP*MRTRKRASGGRYPPPLFRGARTFL 284
            RA      L   G     LLP+  CA TAPFHP L  + PSAVCSL HFP  R  +   G      L   ARTFL
Sbjct:   73 RASGHLFGLASSGVCRTGLLPDSWCALTAPFHPYLIPYGPSAVCSLLHFPSARAAQALPG-----TLPYEARTFL 142          
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A158S2I3_9SPHN (Uncharacterized protein n=1 Tax=Novosphingobium sp. KN65.2 TaxID=1478134 RepID=A0A158S2I3_9SPHN)

HSP 1 Score: 53.9 bits (128), Expect = 8.950e-7
Identity = 40/97 (41.24%), Postives = 47/97 (48.45%), Query Frame = 3
Query:    9 QPTRVSRSEPLLP*PKSRARDPYLALLRVGFAMQALLPEPRCAFTAPFHPCL*SF-----LPSAVCSLWHFP*MRTRKRASGGRYPPPLFRGARTFL 284
            +PTR+S  +P       +A  PY  LLRVGF M   +      F     P   S      L S   SL  FP     + + GGRYPPPLFRGARTFL
Sbjct:   59 KPTRLSARKP-------KASSPYSVLLRVGFTMPLAVTGSAVRFYRTLSPLPASRRGIGGLLSVALSL-SFP--SPARESPGGRYPPPLFRGARTFL 145          
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Match: A0A1E3GPF8_9GAMM (Uncharacterized protein n=1 Tax=Methylophaga muralis TaxID=291169 RepID=A0A1E3GPF8_9GAMM)

HSP 1 Score: 49.3 bits (116), Expect = 3.400e-5
Identity = 30/54 (55.56%), Postives = 31/54 (57.41%), Query Frame = 3
Query:    3 L*QPTRVSRSEPLLP*PKSRARDPYLALLRVGFAMQALLPEPRCAFTAPFHPCL 164
            L QPTR    EP  P    +    YL LL VGF M  LLPE RCA TAPFHP L
Sbjct:   32 LKQPTR----EPCGPHVMPKHLFLYLVLLLVGFTMPLLLPEARCALTAPFHPYL 81          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig100045.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A3B0YBJ9_9ZZZZ2.640e-1846.23Uncharacterized protein n=1 Tax=hydrothermal vent ... [more]
A0A381NU16_9ZZZZ7.020e-1360.94Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A1B2AFP3_9SPHN2.080e-1259.72Uncharacterized protein n=1 Tax=Tsuneonella dongta... [more]
A0A1M5BM71_9RHOB2.160e-951.95Uncharacterized protein n=1 Tax=Loktanella atrilut... [more]
A0A3E0H6S5_9GAMM6.070e-745.33Uncharacterized protein n=1 Tax=Paraperlucidibaca ... [more]
A0A158S2I3_9SPHN8.950e-741.24Uncharacterized protein n=1 Tax=Novosphingobium sp... [more]
A0A1E3GPF8_9GAMM3.400e-555.56Uncharacterized protein n=1 Tax=Methylophaga mural... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig100045contigP-canaliculata_contig100045:120..410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.8
Seed ortholog evalue1e-07
Seed eggNOG ortholog314264.ROS217_14991
EggNOG OGs1NP5K@1224,2ENFV@1,2UJUH@28211,33G39@2
Best tax levelAlphaproteobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size293
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.648336-CDS-P-canaliculata_contig100045:119..4101622815573.648336-CDS-P-canaliculata_contig100045:119..410Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100045 120..410 -
1693494144.699959-CDS-P-canaliculata_contig100045:119..4101693494144.699959-CDS-P-canaliculata_contig100045:119..410Pelvetia canaliculata dioeciousCDSP-canaliculata_contig100045 120..410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig100045.54.1prot_P-canaliculata_contig100045.54.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig100045 120..410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig100045.54.1

>prot_P-canaliculata_contig100045.54.1 ID=prot_P-canaliculata_contig100045.54.1|Name=mRNA_P-canaliculata_contig100045.54.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=97bp
RSSSQPGSLGANHSCPDPKAGRETPIWPCSGWGLPCRRCCQNPGALLPHP
FTLACEVSFHRRFALCGTFPECAPESAHPAGVTRHPCFVEPGLSSRT
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mRNA from alignment at P-canaliculata_contig100045:120..410-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig100045.54.1 ID=mRNA_P-canaliculata_contig100045.54.1|Name=mRNA_P-canaliculata_contig100045.54.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=291bp|location=Sequence derived from alignment at P-canaliculata_contig100045:120..410- (Pelvetia canaliculata dioecious)
CGCTCTAGCAGCCAACCCGGGTCTCTCGGAGCGAACCACTCCTGCCCTGA CCCAAAAGCCGGGCGCGAGACCCCTATTTGGCCTTGCTCCGGGTGGGGTT TGCCATGCAGGCGCTGTTGCCAGAACCCCGGTGCGCTTTTACCGCACCCT TTCACCCTTGCCTGTGAAGTTTCCTTCCATCGGCGGTTTGCTCTCTGTGG CACTTTCCCTGAATGCGCACCCGAAAGCGCGCATCCGGCGGGCGTTACCC GCCACCCTTGTTTCGTGGAGCCCGGACTTTCCTCGCGAACC
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Coding sequence (CDS) from alignment at P-canaliculata_contig100045:120..410-

>mRNA_P-canaliculata_contig100045.54.1 ID=mRNA_P-canaliculata_contig100045.54.1|Name=mRNA_P-canaliculata_contig100045.54.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at P-canaliculata_contig100045:120..410- (Pelvetia canaliculata dioecious)
CGCTCTAGCAGCCAACCCGGGTCTCTCGGAGCGAACCACTCCTGCCCTGA
CCCAAAAGCCGGGCGCGAGACCCCTATTTGGCCTTGCTCCGGGTGGGGTT
TGCCATGCAGGCGCTGTTGCCAGAACCCCGGTGCGCTTTTACCGCACCCT
TTCACCCTTGCCTGTGAAGTTTCCTTCCATCGGCGGTTTGCTCTCTGTGG
CACTTTCCCTGAATGCGCACCCGAAAGCGCGCATCCGGCGGGCGTTACCC
GCCACCCTTGTTTCGTGGAGCCCGGACTTTCCTCGCGAACCCGCTCTAGC
AGCCAACCCGGGTCTCTCGGAGCGAACCACTCCTGCCCTGACCCAAAAGC
CGGGCGCGAGACCCCTATTTGGCCTTGCTCCGGGTGGGGTTTGCCATGCA
GGCGCTGTTGCCAGAACCCCGGTGCGCTTTTACCGCACCCTTTCACCCTT
GCCTGTGAAGTTTCCTTCCATCGGCGGTTTGCTCTCTGTGGCACTTTCCC
TGAATGCGCACCCGAAAGCGCGCATCCGGCGGGCGTTACCCGCCACCCTT
GTTTCGTGGAGCCCGGACTTTCCTCGCGAACC
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