mRNA_P-canaliculata_contig10003.52.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig10003.52.1
Unique NamemRNA_P-canaliculata_contig10003.52.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig10003.52.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig10003contigP-canaliculata_contig10003:3..1715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size473
Cds size288
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig10003.52.1prot_P-canaliculata_contig10003.52.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig10003 3..1531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.4866178-CDS-P-canaliculata_contig10003:2..891622815573.4866178-CDS-P-canaliculata_contig10003:2..89Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10003 3..89 +
1693494144.5359037-CDS-P-canaliculata_contig10003:2..891693494144.5359037-CDS-P-canaliculata_contig10003:2..89Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10003 3..89 +
1622815573.5015633-CDS-P-canaliculata_contig10003:1330..15311622815573.5015633-CDS-P-canaliculata_contig10003:1330..1531Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10003 1331..1531 +
1693494144.5664365-CDS-P-canaliculata_contig10003:1330..15311693494144.5664365-CDS-P-canaliculata_contig10003:1330..1531Pelvetia canaliculata dioeciousCDSP-canaliculata_contig10003 1331..1531 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815573.515418-UTR-P-canaliculata_contig10003:1531..17151622815573.515418-UTR-P-canaliculata_contig10003:1531..1715Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10003 1532..1715 +
1693494144.5782096-UTR-P-canaliculata_contig10003:1531..17151693494144.5782096-UTR-P-canaliculata_contig10003:1531..1715Pelvetia canaliculata dioeciousUTRP-canaliculata_contig10003 1532..1715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig10003.52.1

>prot_P-canaliculata_contig10003.52.1 ID=prot_P-canaliculata_contig10003.52.1|Name=mRNA_P-canaliculata_contig10003.52.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=96bp
DSPPSLLRFTAQQISLLALHTFPTPWRRKFKKTTSPPLSNNPLEEAVYES
SFATGVDVGRTIPNRGETPLRTVYHATSVEGEYQARDTGHGSQRY*
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mRNA from alignment at P-canaliculata_contig10003:3..1715+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig10003.52.1 ID=mRNA_P-canaliculata_contig10003.52.1|Name=mRNA_P-canaliculata_contig10003.52.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=1713bp|location=Sequence derived from alignment at P-canaliculata_contig10003:3..1715+ (Pelvetia canaliculata dioecious)
GACTCTCCGCCGAGTCTGCTGAGGTTTACAGCACAGCAGATCTCCCTGCT
AGCGCTGCACACATTCCCTACTCCGTGGAGAAGGAAGGTGACGTGAACAT
CCGAAAAAAACGTTTATTAGAAGGGAGAGGATGACCGAGACATAAATCAG
TGATAAAATGAAAAACGTGAAAGACGGCGTGCATTATTCATAGATCTATG
CTACTGCATTATTAAACGTGTCATAGTCATATAACTGTCGTCGCCGTGAT
CATATAGGCACAGTACAAAATGTTTATGGCCTCTAAAACCTTCTCCATCC
TCACAAGTGCACCATCATCCCAGAACATCCTCCGTGAACGTTCGCCACAC
AGCTATTAATACTTCACACCCCTCCTTGTGTACGGAGGGTTCGACGAAAG
TTTTCGTGATTATCGTGCTACCACGTAGTACGTACTGAAGTGCAGTCCAT
CCTTGTTTACTACAGTATTCCGTACATGCATAAATTTGACGCTGCGTGTG
AGTAACCTCCGTACTGCACCATACGGCTATCGTACATTGCACCGCTGCAT
ACACTGCTTGTACCCCAGAGACAATCAAGAGCCGAGGAAGAGTCGAGAAG
ACACGATAACTATGACGGTCTTTTGAAGATACACACATACCGCTAAGAGT
AGTATAGATCTATAGTAACACCAACACCAGCCCCTGCCCTCACGAATAAG
GCGACGAGATGTGACATCAGATATCGGGGCCACACTGACTGTACCAAATA
GCTCTATGCTTGTATTGTAGTAACGTTGCGTAATCGACGCGAAAACACTT
TTGCTCGACGGCGATACAAAGGCACTATTTAGTACTACGCTGGGATTAGT
TTTTTGTGTTGCGGCGTCCACAAGGGATGCGTGTTTTCATCGACTTCGTA
AAGCAGTATATTGGTGAGATCGGCTCTCGATTTTGAAATAGACTCCCAGT
GTGTTACCGGAACCCGGTCTGAGAGAGCCAAACCAATTAATGCCTGAAGG
GTTTAATGTCAACTTTTTGAAGGCGCCATCAAATTTGAGCGCATCTTACC
CAGGCGGTAATCAAGATATATACACCATATTTATCTGGGTCTAAGAAAGT
CTGTCAGTTCCTCGACCAATGGTGCGGTTATTTTTATGCCATTATACATG
TTTTCATGTGCCTTGCTTGGTGTTTGTTTTTCCAAGTCGCGCAATAAAAT
TCGCCATTGAAGCGCTTGTACGTACATACATACCGATACCGTGCTTTGCT
TTTTACCATTCTTTGTCTTGGTGTCGCCGCCGATGCTGTATTTTTCTCAT
TAAAACTGTCGCCATCATCAATAAATAGTTCAAGAAGACGACGTCACCCC
CCTTGAGCAATAACCCCCTTGAAGAAGCAGTCTACGAATCTTCATTCGCC
ACTGGGGTGGACGTGGGAAGAACGATCCCCAACCGTGGGGAGACGCCACT
ACGTACGGTATACCATGCAACGTCGGTGGAGGGGGAATATCAGGCTCGGG
ACACAGGGCATGGATCACAGAGATATTAACAAAGCGCCAAGAGCAGAGAA
GACATCGCCGGTAGCGCATCATCATCAGTAATAATGGGGCCTCAACGTTT
CGGGGGCGGCAATGATATATTGAGCGGGCGTTGCCAACAATGCATCTGAT
CGATTCACTTAGTAGAACCGTTACATAGGGAGTGGACCTCGATATATGTT
TGTTACTTCACAG
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Coding sequence (CDS) from alignment at P-canaliculata_contig10003:3..1715+

>mRNA_P-canaliculata_contig10003.52.1 ID=mRNA_P-canaliculata_contig10003.52.1|Name=mRNA_P-canaliculata_contig10003.52.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at P-canaliculata_contig10003:3..1715+ (Pelvetia canaliculata dioecious)
GACTCTCCGCCGAGTCTGCTGAGGTTTACAGCACAGCAGATCTCCCTGCT
AGCGCTGCACACATTCCCTACTCCGTGGAGAAGGAAGGACTCTCCGCCGA
GTCTGCTGAGGTTTACAGCACAGCAGATCTCCCTGCTAGCGCTGCACACA
TTCCCTACTCCGTGGAGAAGGAAGTTCAAGAAGACGACGTCACCCCCCTT
GAGCAATAACCCCCTTGAAGAAGCAGTCTACGAATCTTCATTCGCCACTG
GGGTGGACGTGGGAAGAACGATCCCCAACCGTGGGGAGACGCCACTACGT
ACGGTATACCATGCAACGTCGGTGGAGGGGGAATATCAGGCTCGGGACAC
AGGGCATGGATCACAGAGATATTAATTCAAGAAGACGACGTCACCCCCCT
TGAGCAATAACCCCCTTGAAGAAGCAGTCTACGAATCTTCATTCGCCACT
GGGGTGGACGTGGGAAGAACGATCCCCAACCGTGGGGAGACGCCACTACG
TACGGTATACCATGCAACGTCGGTGGAGGGGGAATATCAGGCTCGGGACA
CAGGGCATGGATCACAGAGATATTAA
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