prot_P-canaliculata_contig103764.519.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig103764.519.1
Unique Nameprot_P-canaliculata_contig103764.519.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length214
Homology
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BLAST of mRNA_P-canaliculata_contig103764.519.1 vs. uniprot
Match: B9XGE6_PEDPL (RDD domain containing protein n=1 Tax=Pedosphaera parvula (strain Ellin514) TaxID=320771 RepID=B9XGE6_PEDPL)

HSP 1 Score: 56.2 bits (134), Expect = 5.850e-6
Identity = 52/167 (31.14%), Postives = 74/167 (44.31%), Query Frame = 0 
Query:   79 WFYIVRSEPDGPVDVATLHKLYHLGTVQPQTLIWHHGAEGWLPYREVLEPPEIEVQLPEFFDGTEKKPAPPAEMAPSTYG------ELPGL-PSQ--LSAARRR----------KKHNE-----TGSESPP---AGFFVRAAAYIIDTIFVHV------LAFGIGSA 212
            W+Y+   +  GPVD A L+ L   G + P TL+W+     W PY  +  PP + ++ P          APP   AP   G      E  G+ P+   +S    R          +K +E     TG  +     AGF++RAAAYIID I + V      L  G+G+A
Sbjct:    3 WYYVDAGQQAGPVDDAGLNSLVTSGKITPDTLVWNESMSNWQPYSSI-HPPGLRMESPPS--------APPIVAAPPIAGNEVVCVECGGIFPADHTISYGNARVCAKCKPIFVQKLSEGVALNTGYGAISMHYAGFWIRAAAYIIDIIILSVVNVILNLVLGVGTA 160
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BLAST of mRNA_P-canaliculata_contig103764.519.1 vs. uniprot
Match: UPI0008C561AC (DUF805 domain-containing protein n=1 Tax=Roseivivax marinus TaxID=1379903 RepID=UPI0008C561AC)

HSP 1 Score: 52.4 bits (124), Expect = 7.980e-5
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 0 
Query:    4 WYFIHDATPFGPVSQESLHTLAGEGVIDGDSAVWRSDLPGWLPFSVTLEDENHPSPPPITQ 64
            WY++ D    GPV++  L  LA +G++ GD+ VWR  L  W P     +     +PPP+TQ
Sbjct:    3 WYYVKDGAQEGPVTEADLEELARDGIVRGDTLVWRPGLQEWQP---AYDHVAGVTPPPVTQ 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103764.519.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B9XGE6_PEDPL5.850e-631.14RDD domain containing protein n=1 Tax=Pedosphaera ... [more]
UPI0008C561AC7.980e-537.70DUF805 domain-containing protein n=1 Tax=Roseiviva... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025640GYF domain 2PFAMPF14237GYF_2coord: 4..48
e-value: 8.3E-10
score: 38.3
coord: 79..125
e-value: 1.4E-11
score: 44.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103764contigP-canaliculata_contig103764:196..837 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103764.519.1mRNA_P-canaliculata_contig103764.519.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig103764 196..837 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig103764.519.1 ID=prot_P-canaliculata_contig103764.519.1|Name=mRNA_P-canaliculata_contig103764.519.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=214bp
ENGWYFIHDATPFGPVSQESLHTLAGEGVIDGDSAVWRSDLPGWLPFSVT
LEDENHPSPPPITQTTLIALPDIAPDTEWFYIVRSEPDGPVDVATLHKLY
HLGTVQPQTLIWHHGAEGWLPYREVLEPPEIEVQLPEFFDGTEKKPAPPA
EMAPSTYGELPGLPSQLSAARRRKKHNETGSESPPAGFFVRAAAYIIDTI
FVHVLAFGIGSALV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025640GYF_2