mRNA_P-canaliculata_contig103764.519.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103764.519.1
Unique NamemRNA_P-canaliculata_contig103764.519.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig103764.519.1 vs. uniprot
Match: B9XGE6_PEDPL (RDD domain containing protein n=1 Tax=Pedosphaera parvula (strain Ellin514) TaxID=320771 RepID=B9XGE6_PEDPL)

HSP 1 Score: 56.2 bits (134), Expect = 5.850e-6
Identity = 52/167 (31.14%), Postives = 74/167 (44.31%), Query Frame = 1 
Query:  235 WFYIVRSEPDGPVDVATLHKLYHLGTVQPQTLIWHHGAEGWLPYREVLEPPEIEVQLPEFFDGTEKKPAPPAEMAPSTYG------ELPGL-PSQ--LSAARRR----------KKHNE-----TGSESPP---AGFFVRAAAYIIDTIFVHV------LAFGIGSA 636
            W+Y+   +  GPVD A L+ L   G + P TL+W+     W PY  +  PP + ++ P          APP   AP   G      E  G+ P+   +S    R          +K +E     TG  +     AGF++RAAAYIID I + V      L  G+G+A
Sbjct:    3 WYYVDAGQQAGPVDDAGLNSLVTSGKITPDTLVWNESMSNWQPYSSI-HPPGLRMESPPS--------APPIVAAPPIAGNEVVCVECGGIFPADHTISYGNARVCAKCKPIFVQKLSEGVALNTGYGAISMHYAGFWIRAAAYIIDIIILSVVNVILNLVLGVGTA 160
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BLAST of mRNA_P-canaliculata_contig103764.519.1 vs. uniprot
Match: UPI0008C561AC (DUF805 domain-containing protein n=1 Tax=Roseivivax marinus TaxID=1379903 RepID=UPI0008C561AC)

HSP 1 Score: 52.4 bits (124), Expect = 7.980e-5
Identity = 23/61 (37.70%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:   10 WYFIHDATPFGPVSQESLHTLAGEGVIDGDSAVWRSDLPGWLPFSVTLEDENHPSPPPITQ 192
            WY++ D    GPV++  L  LA +G++ GD+ VWR  L  W P     +     +PPP+TQ
Sbjct:    3 WYYVKDGAQEGPVTEADLEELARDGIVRGDTLVWRPGLQEWQP---AYDHVAGVTPPPVTQ 60
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103764.519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
B9XGE6_PEDPL5.850e-631.14RDD domain containing protein n=1 Tax=Pedosphaera ... [more]
UPI0008C561AC7.980e-537.70DUF805 domain-containing protein n=1 Tax=Roseiviva... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103764contigP-canaliculata_contig103764:196..837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size642
Cds size642
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.8261845-CDS-P-canaliculata_contig103764:195..8371622815607.8261845-CDS-P-canaliculata_contig103764:195..837Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103764 196..837 +
1693494163.4625063-CDS-P-canaliculata_contig103764:195..8371693494163.4625063-CDS-P-canaliculata_contig103764:195..837Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103764 196..837 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103764.519.1prot_P-canaliculata_contig103764.519.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103764 196..837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103764.519.1

>prot_P-canaliculata_contig103764.519.1 ID=prot_P-canaliculata_contig103764.519.1|Name=mRNA_P-canaliculata_contig103764.519.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=214bp
ENGWYFIHDATPFGPVSQESLHTLAGEGVIDGDSAVWRSDLPGWLPFSVT
LEDENHPSPPPITQTTLIALPDIAPDTEWFYIVRSEPDGPVDVATLHKLY
HLGTVQPQTLIWHHGAEGWLPYREVLEPPEIEVQLPEFFDGTEKKPAPPA
EMAPSTYGELPGLPSQLSAARRRKKHNETGSESPPAGFFVRAAAYIIDTI
FVHVLAFGIGSALV
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mRNA from alignment at P-canaliculata_contig103764:196..837+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103764.519.1 ID=mRNA_P-canaliculata_contig103764.519.1|Name=mRNA_P-canaliculata_contig103764.519.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=642bp|location=Sequence derived from alignment at P-canaliculata_contig103764:196..837+ (Pelvetia canaliculata dioecious)
GAAAACGGCTGGTATTTCATCCACGACGCCACCCCCTTCGGTCCCGTTTC
CCAGGAAAGCCTGCACACACTCGCCGGAGAAGGCGTCATCGATGGCGACT
CCGCCGTATGGCGCTCAGACCTCCCGGGATGGCTCCCCTTCTCCGTCACC
CTCGAAGATGAGAACCACCCATCGCCACCGCCCATCACCCAGACCACCCT
CATCGCCCTGCCCGATATCGCGCCGGACACCGAGTGGTTTTACATCGTCC
GCAGCGAGCCGGATGGCCCCGTAGATGTCGCTACCCTGCACAAGCTCTAC
CACCTCGGGACCGTCCAGCCACAGACTCTCATCTGGCACCACGGGGCAGA
AGGTTGGCTACCCTACAGGGAGGTCCTCGAGCCACCCGAAATCGAAGTCC
AGCTCCCCGAATTTTTCGATGGCACCGAAAAGAAGCCCGCGCCACCCGCC
GAAATGGCGCCCTCCACCTATGGAGAGCTCCCCGGCCTCCCCTCCCAGCT
CAGCGCCGCCCGACGGAGAAAAAAACACAACGAAACCGGTTCCGAAAGCC
CGCCCGCAGGGTTCTTCGTCCGCGCCGCCGCCTATATCATCGATACTATT
TTCGTCCACGTTCTCGCCTTTGGCATCGGGAGTGCGCTCGTC
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Coding sequence (CDS) from alignment at P-canaliculata_contig103764:196..837+

>mRNA_P-canaliculata_contig103764.519.1 ID=mRNA_P-canaliculata_contig103764.519.1|Name=mRNA_P-canaliculata_contig103764.519.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at P-canaliculata_contig103764:196..837+ (Pelvetia canaliculata dioecious)
GAAAACGGCTGGTATTTCATCCACGACGCCACCCCCTTCGGTCCCGTTTC
CCAGGAAAGCCTGCACACACTCGCCGGAGAAGGCGTCATCGATGGCGACT
CCGCCGTATGGCGCTCAGACCTCCCGGGATGGCTCCCCTTCTCCGTCACC
CTCGAAGATGAGAACCACCCATCGCCACCGCCCATCACCCAGACCACCCT
CATCGCCCTGCCCGATATCGCGCCGGACACCGAGTGGTTTTACATCGTCC
GCAGCGAGCCGGATGGCCCCGTAGATGTCGCTACCCTGCACAAGCTCTAC
CACCTCGGGACCGTCCAGCCACAGACTCTCATCTGGCACCACGGGGCAGA
AGGTTGGCTACCCTACAGGGAGGTCCTCGAGCCACCCGAAATCGAAGTCC
AGCTCCCCGAATTTTTCGATGGCACCGAAAAGAAGCCCGCGCCACCCGCC
GAAATGGCGCCCTCCACCTATGGAGAGCTCCCCGGCCTCCCCTCCCAGCT
CAGCGCCGCCCGACGGAGAAAAAAACACAACGAAACCGGTTCCGAAAGCC
CGCCCGCAGGGTTCTTCGTCCGCGCCGCCGCCTATATCATCGATACTATT
TTCGTCCACGTTCTCGCCTTTGGCATCGGGAGTGCGCTCGTCGAAAACGG
CTGGTATTTCATCCACGACGCCACCCCCTTCGGTCCCGTTTCCCAGGAAA
GCCTGCACACACTCGCCGGAGAAGGCGTCATCGATGGCGACTCCGCCGTA
TGGCGCTCAGACCTCCCGGGATGGCTCCCCTTCTCCGTCACCCTCGAAGA
TGAGAACCACCCATCGCCACCGCCCATCACCCAGACCACCCTCATCGCCC
TGCCCGATATCGCGCCGGACACCGAGTGGTTTTACATCGTCCGCAGCGAG
CCGGATGGCCCCGTAGATGTCGCTACCCTGCACAAGCTCTACCACCTCGG
GACCGTCCAGCCACAGACTCTCATCTGGCACCACGGGGCAGAAGGTTGGC
TACCCTACAGGGAGGTCCTCGAGCCACCCGAAATCGAAGTCCAGCTCCCC
GAATTTTTCGATGGCACCGAAAAGAAGCCCGCGCCACCCGCCGAAATGGC
GCCCTCCACCTATGGAGAGCTCCCCGGCCTCCCCTCCCAGCTCAGCGCCG
CCCGACGGAGAAAAAAACACAACGAAACCGGTTCCGAAAGCCCGCCCGCA
GGGTTCTTCGTCCGCGCCGCCGCCTATATCATCGATACTATTTTCGTCCA
CGTTCTCGCCTTTGGCATCGGGAGTGCGCTCGTC
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