mRNA_P-canaliculata_contig103729.514.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig103729.514.1
Unique NamemRNA_P-canaliculata_contig103729.514.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig103729.514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig103729contigP-canaliculata_contig103729:34..462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size431
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.5666277-CDS-P-canaliculata_contig103729:33..4621622815607.5666277-CDS-P-canaliculata_contig103729:33..462Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103729 34..462 +
1693494163.3341427-CDS-P-canaliculata_contig103729:33..4621693494163.3341427-CDS-P-canaliculata_contig103729:33..462Pelvetia canaliculata dioeciousCDSP-canaliculata_contig103729 34..462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig103729.514.1prot_P-canaliculata_contig103729.514.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig103729 34..462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig103729.514.1

>prot_P-canaliculata_contig103729.514.1 ID=prot_P-canaliculata_contig103729.514.1|Name=mRNA_P-canaliculata_contig103729.514.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=143bp
SKSTRFALITVVMVAVPTGCVVSPPLFPQNIQSHENSPTSQRAQGVPPTV
NLALGTNREGRGEVIGKASRIQSSRIGSVLVCVRQNAQHRELKLPESRRF
ALNTVLMVDVSTREPTGASPPPLSPQNIQSNEKSFTNPRARGE
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mRNA from alignment at P-canaliculata_contig103729:34..462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig103729.514.1 ID=mRNA_P-canaliculata_contig103729.514.1|Name=mRNA_P-canaliculata_contig103729.514.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=429bp|location=Sequence derived from alignment at P-canaliculata_contig103729:34..462+ (Pelvetia canaliculata dioecious)
TCCAAGTCCACACGATTTGCGCTCATTACTGTCGTCATGGTTGCTGTACC
CACCGGTTGCGTAGTGAGTCCTCCACTATTTCCCCAAAACATACAGTCAC
ACGAAAACTCCCCAACAAGCCAGAGGGCACAGGGTGTGCCACCAACCGTA
AATCTGGCGCTGGGCACGAATCGTGAGGGCAGGGGAGAAGTCATTGGTAA
AGCTAGTCGGATACAAAGTAGCCGAATAGGGTCTGTGCTCGTGTGTGTAC
GCCAAAACGCACAGCATCGCGAGCTAAAACTTCCCGAGTCCAGGCGATTT
GCACTCAATACTGTTCTAATGGTTGATGTGTCCACTCGTGAGCCCACAGG
CGCAAGTCCTCCTCCCCTCTCGCCCCAAAACATACAATCAAACGAAAAGT
CCTTCACAAACCCTAGGGCACGAGGTGAA
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Coding sequence (CDS) from alignment at P-canaliculata_contig103729:34..462+

>mRNA_P-canaliculata_contig103729.514.1 ID=mRNA_P-canaliculata_contig103729.514.1|Name=mRNA_P-canaliculata_contig103729.514.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at P-canaliculata_contig103729:34..462+ (Pelvetia canaliculata dioecious)
TCCAAGTCCACACGATTTGCGCTCATTACTGTCGTCATGGTTGCTGTACC
CACCGGTTGCGTAGTGAGTCCTCCACTATTTCCCCAAAACATACAGTCAC
ACGAAAACTCCCCAACAAGCCAGAGGGCACAGGGTGTGCCACCAACCGTA
AATCTGGCGCTGGGCACGAATCGTGAGGGCAGGGGAGAAGTCATTGGTAA
AGCTAGTCGGATACAAAGTAGCCGAATAGGGTCTGTGCTCGTGTGTGTAC
GCCAAAACGCACAGCATCGCGAGCTAAAACTTCCCGAGTCCAGGCGATTT
GCACTCAATACTGTTCTAATGGTTGATGTGTCCACTCGTGAGCCCACAGG
CGCAAGTCCTCCTCCCCTCTCGCCCCAAAACATACAATCAAACGAAAAGT
CCTTCACAAACCCTAGGGCACGAGGTGAATCCAAGTCCACACGATTTGCG
CTCATTACTGTCGTCATGGTTGCTGTACCCACCGGTTGCGTAGTGAGTCC
TCCACTATTTCCCCAAAACATACAGTCACACGAAAACTCCCCAACAAGCC
AGAGGGCACAGGGTGTGCCACCAACCGTAAATCTGGCGCTGGGCACGAAT
CGTGAGGGCAGGGGAGAAGTCATTGGTAAAGCTAGTCGGATACAAAGTAG
CCGAATAGGGTCTGTGCTCGTGTGTGTACGCCAAAACGCACAGCATCGCG
AGCTAAAACTTCCCGAGTCCAGGCGATTTGCACTCAATACTGTTCTAATG
GTTGATGTGTCCACTCGTGAGCCCACAGGCGCAAGTCCTCCTCCCCTCTC
GCCCCAAAACATACAATCAAACGAAAAGTCCTTCACAAACCCTAGGGCAC
GAGGTGAA
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