prot_P-canaliculata_contig98286.23926.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig98286.23926.1
Unique Name	prot_P-canaliculata_contig98286.23926.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	123

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig98286.23926.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig98286.23926.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

ZOOM

x 1

POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.200.20		coord: 5..115 e-value: 1.2E-14 score: 56.0
IPR032030	YscD, cytoplasmic domain	PFAM	PF16697	Yop-YscD_cpl	coord: 15..97 e-value: 7.2E-10 score: 39.0
IPR000253	Forkhead-associated (FHA) domain	PROSITE	PS50006	FHA_DOMAIN	coord: 25..76 score: 7.056
IPR008984	SMAD/FHA domain superfamily	SUPERFAMILY	49879	SMAD/FHA domain	coord: 14..97

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig98286	contig	P-canaliculata_contig98286:433..801 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig98286.23926.1	mRNA_P-canaliculata_contig98286.23926.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig98286 433..801 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig98286.23926.1 ID=prot_P-canaliculata_contig98286.23926.1|Name=mRNA_P-canaliculata_contig98286.23926.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=123bp
MSAKVSYDDTSGRTQKLQLRAGQRLSIGASFSADIVLKNSQGVAGEHAEI
FFKHQKCSIRNLTGSPKKLLINGQPTKQAELANGDAIEIGSNQISFEMES
SEQSGILPATVAAPVAAVTVTLP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032030	YscD_cytoplasmic_dom
IPR000253	FHA_dom
IPR008984	SMAD_FHA_dom_sf