prot_P-canaliculata_contig97520.23848.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig97520.23848.1
Unique Name	prot_P-canaliculata_contig97520.23848.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	171

Homology

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BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot
Match: A0A7S2H3H0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H3H0_9STRA)

HSP 1 Score: 282 bits (721), Expect = 5.050e-93
Identity = 132/168 (78.57%), Postives = 153/168 (91.07%), Query Frame = 0

Query:    1 VDKIYNLVEEVDNYIPTPIRDTDKTFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVELVGLGNTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLSKPGTITPHNTFESEVYVLTKEEGGRHTPFFVGYRPQFYVRTTDVTGENLRFTDDNGSKL 168
            VDKI++L++ VD YIPTP+RDT+KTFLMA+EDVFSITGRGTVATG+I+RG++ VG+T+E+VGLG+T+STTVTGVEMFQKTLD G+AGDNVGILLRGLQKT+IERGMVLSKPGTITPH  FE EVY+LTKEEGGRHTPFF GYRPQFYVRTTDVTG+   FT D G  +
Sbjct:  111 VDKIFSLMDTVDEYIPTPVRDTEKTFLMAVEDVFSITGRGTVATGRIERGVINVGDTIEIVGLGDTQSTTVTGVEMFQKTLDSGMAGDNVGILLRGLQKTDIERGMVLSKPGTITPHTEFEGEVYILTKEEGGRHTPFFTGYRPQFYVRTTDVTGDIKAFTSDEGDDV 278

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BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot
Match: A0A516ZAG0_9STRA (Elongation factor Tu, chloroplastic n=4 Tax=Dictyochophyceae TaxID=39119 RepID=A0A516ZAG0_9STRA)

HSP 1 Score: 283 bits (725), Expect = 1.750e-92
Identity = 134/168 (79.76%), Postives = 155/168 (92.26%), Query Frame = 0

Query:    1 VDKIYNLVEEVDNYIPTPIRDTDKTFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVELVGLGNTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLSKPGTITPHNTFESEVYVLTKEEGGRHTPFFVGYRPQFYVRTTDVTGENLRFTDDNGSKL 168
            VDKI+NL++EVDNYIPTP RDT+KTFLMA+EDVFSITGRGTVATG+I+RGI+ VG+T+E+VGLG+T++TTVTGVEMFQKTLD G+AGDNVGILLRG+QKT+IERGMVLSKPGTITPH  FE EVY+LTKEEGGRHTPFF GYRPQFYVRTTDVTG    FT D+G+ +
Sbjct:  196 VDKIFNLMDEVDNYIPTPERDTEKTFLMAVEDVFSITGRGTVATGRIERGIINVGDTIEIVGLGDTQTTTVTGVEMFQKTLDSGMAGDNVGILLRGVQKTDIERGMVLSKPGTITPHTLFEGEVYILTKEEGGRHTPFFTGYRPQFYVRTTDVTGNIKAFTADDGTDV 363

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BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot
Match: A0A7S6ZPC8_9STRA (Elongation factor Tu, chloroplastic n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A7S6ZPC8_9STRA)

HSP 1 Score: 282 bits (721), Expect = 7.050e-92
Identity = 136/168 (80.95%), Postives = 155/168 (92.26%), Query Frame = 0

Query:    1 VDKIYNLVEEVDNYIPTPIRDTDKTFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVELVGLGNTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLSKPGTITPHNTFESEVYVLTKEEGGRHTPFFVGYRPQFYVRTTDVTGENLRFTDDNGSKL 168
            VDKIY+L++ +D+YIPTP RD +KTFLMAIEDVFSITGRGTVATG+I+RG+VKVGETVELVGLGNT+ST VTGVEMFQKTL+EG AGDNVGILLRG+QK EIERGMVL++PGTITPH +FESEVY+LTKEEGGRHTPFF GYRPQFYVRTTDVTG+   FT D+GS +
Sbjct:  196 VDKIYSLMDAIDDYIPTPKRDIEKTFLMAIEDVFSITGRGTVATGRIERGVVKVGETVELVGLGNTRSTIVTGVEMFQKTLEEGFAGDNVGILLRGIQKNEIERGMVLAQPGTITPHTSFESEVYILTKEEGGRHTPFFSGYRPQFYVRTTDVTGQIKSFTADDGSDV 363

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BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot
Match: A0A161GBL0_9FLOR (Elongation factor Tu, chloroplastic (Fragment) n=9 Tax=Gigartinales TaxID=28017 RepID=A0A161GBL0_9FLOR)

HSP 1 Score: 276 bits (706), Expect = 3.290e-91
Identity = 130/167 (77.84%), Postives = 153/167 (91.62%), Query Frame = 0

Query:    1 VDKIYNLVEEVDNYIPTPIRDTDKTFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVELVGLGNTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLSKPGTITPHNTFESEVYVLTKEEGGRHTPFFVGYRPQFYVRTTDVTGENLRFTDDNGSK 167
            VDKI+ L++ VDNYIPTPIRD +KTFLMAIEDVFSITGRGTVATG+I+RGI+KVG+T+E+VGL +T +TT+TG+EMFQKTLDEG+AGDN+GILLRG+QK +IERGMVL++PGTITPH  FE+EVY+LTKEEGGRHTPFF GYRPQFYVRTTDVTG    FT D+GSK
Sbjct:  121 VDKIHELMDAVDNYIPTPIRDVEKTFLMAIEDVFSITGRGTVATGRIERGIIKVGDTIEIVGLKDTATTTITGLEMFQKTLDEGIAGDNIGILLRGVQKKDIERGMVLAQPGTITPHTQFEAEVYILTKEEGGRHTPFFSGYRPQFYVRTTDVTGTITEFTADDGSK 287

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BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot
Match: B0M2B7_9STRA (Elongation factor Tu (Fragment) n=1 Tax=Haramonas dimorpha TaxID=162275 RepID=B0M2B7_9STRA)

HSP 1 Score: 278 bits (711), Expect = 3.550e-91
Identity = 129/167 (77.25%), Postives = 153/167 (91.62%), Query Frame = 0

Query:    2 DKIYNLVEEVDNYIPTPIRDTDKTFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVELVGLGNTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLSKPGTITPHNTFESEVYVLTKEEGGRHTPFFVGYRPQFYVRTTDVTGENLRFTDDNGSKL 168
            DKI+ L+++VD YIPTP RDT++TFLMA+EDVFSITGRGTVATG+I+RG++KVGET+ELVGL  T+ TTVTG+EMFQKTLDEG+AGDNVGILLRG+QK +IERGMVL+KPGTITPH +FESEVY+LTKEEGGRHTPFF GYRPQFYVRTTDVTG+  +FT D+G  +
Sbjct:  181 DKIFELMDKVDEYIPTPQRDTERTFLMAVEDVFSITGRGTVATGRIERGVIKVGETIELVGLAETRQTTVTGIEMFQKTLDEGMAGDNVGILLRGVQKEDIERGMVLAKPGTITPHTSFESEVYILTKEEGGRHTPFFAGYRPQFYVRTTDVTGKITKFTSDDGDTV 347

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BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot
Match: A0A161G7Y4_9FLOR (Elongation factor Tu, chloroplastic (Fragment) n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A161G7Y4_9FLOR)

HSP 1 Score: 274 bits (700), Expect = 1.350e-90
Identity = 128/167 (76.65%), Postives = 155/167 (92.81%), Query Frame = 0

Query:    1 VDKIYNLVEEVDNYIPTPIRDTDKTFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVELVGLGNTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLSKPGTITPHNTFESEVYVLTKEEGGRHTPFFVGYRPQFYVRTTDVTGENLRFTDDNGSK 167
            VDKI++L++ VD+YIPTPIRD +KTFLMA+EDVFSITGRGTVATG+I+RGI+KVG+T+E+VGL +T +TT+TG+EMFQKTLDEG+AGDN+GILLRG+QK +IERGMVL++PGTITPH  FE+EVY+LTKEEGGRHTPFF GYRPQFYVRTTDVTG   +FT D+GSK
Sbjct:   90 VDKIHSLMDAVDDYIPTPIRDVEKTFLMAVEDVFSITGRGTVATGRIERGIIKVGDTIEIVGLRDTTTTTITGLEMFQKTLDEGMAGDNIGILLRGVQKKDIERGMVLAQPGTITPHTQFEAEVYILTKEEGGRHTPFFSGYRPQFYVRTTDVTGTITQFTADDGSK 256

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BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot
Match: A0A161GBE7_9FLOR (Elongation factor Tu, chloroplastic (Fragment) n=2 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A161GBE7_9FLOR)

HSP 1 Score: 273 bits (699), Expect = 1.680e-90
Identity = 127/166 (76.51%), Postives = 152/166 (91.57%), Query Frame = 0

Query:    1 VDKIYNLVEEVDNYIPTPIRDTDKTFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVELVGLGNTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLSKPGTITPHNTFESEVYVLTKEEGGRHTPFFVGYRPQFYVRTTDVTGENLRFTDDNGS 166
            VDKI++L+E VD YIPTP+RD +KTFLMA+EDVFSITGRGTVATG+I+RG++KVG+T+E+VGL  T STT+TG+EMFQKTLDEG+AGDN+GILLRG+QK +IERGMVL++PGTITPH  FE+EVY+LTKEEGGRHTPFF GYRPQFYVRTTDVTG   +FT D+GS
Sbjct:   86 VDKIHSLMEAVDQYIPTPVRDVEKTFLMAVEDVFSITGRGTVATGRIERGVIKVGDTIEIVGLRETTSTTITGLEMFQKTLDEGIAGDNIGILLRGVQKKDIERGMVLAQPGTITPHTQFEAEVYILTKEEGGRHTPFFSGYRPQFYVRTTDVTGTITQFTADDGS 251

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BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot
Match: A0A0G3IEQ1_9EUKA (Elongation factor Tu (Fragment) n=17 Tax=Noelaerhabdaceae TaxID=418966 RepID=A0A0G3IEQ1_9EUKA)

HSP 1 Score: 273 bits (697), Expect = 1.920e-90
Identity = 127/166 (76.51%), Postives = 155/166 (93.37%), Query Frame = 0

Query:    1 VDKIYNLVEEVDNYIPTPIRDTDKTFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVELVGLGNTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLSKPGTITPHNTFESEVYVLTKEEGGRHTPFFVGYRPQFYVRTTDVTGENLRFTDDNGS 166
            VDKI++L+E VDNYIP P RDT+KTFLMA+EDVFSITGRGTVATG+I+RGI+K+G+T+E+VGL +T++TTVTG+EMFQKTLDEG+AGDNVGIL+RG+QKT+IERGMVL++PGTI+PH  FE+EVYVL K+EGGRHTPFF GYRPQFYVRTTDVTG  ++FT D+GS
Sbjct:   64 VDKIFDLMESVDNYIPAPERDTEKTFLMAVEDVFSITGRGTVATGRIERGILKIGDTIEIVGLKDTQTTTVTGIEMFQKTLDEGMAGDNVGILIRGVQKTDIERGMVLAQPGTISPHKKFEAEVYVLGKDEGGRHTPFFTGYRPQFYVRTTDVTGTIVQFTGDDGS 229

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BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot
Match: A0A161G3W2_9FLOR (Elongation factor Tu, chloroplastic (Fragment) n=1 Tax=Eucheuma isiforme TaxID=39836 RepID=A0A161G3W2_9FLOR)

HSP 1 Score: 270 bits (691), Expect = 2.460e-90
Identity = 126/167 (75.45%), Postives = 153/167 (91.62%), Query Frame = 0

Query:    1 VDKIYNLVEEVDNYIPTPIRDTDKTFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVELVGLGNTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLSKPGTITPHNTFESEVYVLTKEEGGRHTPFFVGYRPQFYVRTTDVTGENLRFTDDNGSK 167
            VDKI+ L++ VD YIPTP RDT+KTFLMA+EDVFSITGRGTVATG+I+RGI+KVG+T+E+VGL +T +TT+TG+EMFQKTLDEG+AGDN+GILLRG+QK +IERGMVL++PGTITPH  FE+EVY+LTKEEGGRHTPFF GYRPQFYVRTTDVTG   +FT D+G++
Sbjct:   24 VDKIHTLMDAVDKYIPTPTRDTEKTFLMAVEDVFSITGRGTVATGRIERGIIKVGDTIEIVGLKDTTTTTITGLEMFQKTLDEGMAGDNIGILLRGIQKKDIERGMVLAQPGTITPHTEFEAEVYILTKEEGGRHTPFFSGYRPQFYVRTTDVTGTIKQFTADDGTE 190

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BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot
Match: UPI0019E6975F (Elongation factor Tu n=1 Tax=Geminocystis sp. M7585_C2015_104 TaxID=2774334 RepID=UPI0019E6975F)

HSP 1 Score: 277 bits (708), Expect = 6.500e-90
Identity = 134/167 (80.24%), Postives = 149/167 (89.22%), Query Frame = 0

Query:    1 VDKIYNLVEEVDNYIPTPIRDTDKTFLMAIEDVFSITGRGTVATGKIDRGIVKVGETVELVGLGNTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKTEIERGMVLSKPGTITPHNTFESEVYVLTKEEGGRHTPFFVGYRPQFYVRTTDVTGENLRFTDDNGSK 167
            VDKIY L++ VD YIPTP RD DK FLMA+EDVFSITGRGTVATG+I+RG VKVG+TVE+VGLG T++TTVTGVEMFQKTLDEG+AGDNVG+LLRG+QK EIERGMVL+KPGTITPH  FE+EVYVL KEEGGRHTPFF GYRPQFYVRTTDVTG    FT D+GSK
Sbjct:  196 VDKIYELMDAVDEYIPTPQRDVDKPFLMAVEDVFSITGRGTVATGRIERGRVKVGDTVEIVGLGETRTTTVTGVEMFQKTLDEGIAGDNVGVLLRGIQKNEIERGMVLAKPGTITPHTKFEAEVYVLKKEEGGRHTPFFTGYRPQFYVRTTDVTGTITDFTADDGSK 362

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig97520.23848.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S2H3H0_9STRA	5.050e-93	78.57	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]
A0A516ZAG0_9STRA	1.750e-92	79.76	Elongation factor Tu, chloroplastic n=4 Tax=Dictyo...	[more]
A0A7S6ZPC8_9STRA	7.050e-92	80.95	Elongation factor Tu, chloroplastic n=2 Tax=Strame...	[more]
A0A161GBL0_9FLOR	3.290e-91	77.84	Elongation factor Tu, chloroplastic (Fragment) n=9...	[more]
B0M2B7_9STRA	3.550e-91	77.25	Elongation factor Tu (Fragment) n=1 Tax=Haramonas ...	[more]
A0A161G7Y4_9FLOR	1.350e-90	76.65	Elongation factor Tu, chloroplastic (Fragment) n=2...	[more]
A0A161GBE7_9FLOR	1.680e-90	76.51	Elongation factor Tu, chloroplastic (Fragment) n=2...	[more]
A0A0G3IEQ1_9EUKA	1.920e-90	76.51	Elongation factor Tu (Fragment) n=17 Tax=Noelaerha...	[more]
A0A161G3W2_9FLOR	2.460e-90	75.45	Elongation factor Tu, chloroplastic (Fragment) n=1...	[more]
UPI0019E6975F	6.500e-90	80.24	Elongation factor Tu n=1 Tax=Geminocystis sp. M758...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.30.10		coord: 116..168 e-value: 1.2E-15 score: 59.6
None	No IPR available	GENE3D	2.40.30.10		coord: 21..115 e-value: 8.5E-37 score: 127.3
None	No IPR available	PANTHER	PTHR43721	FAMILY NOT NAMED	coord: 1..157
None	No IPR available	PANTHER	PTHR43721:SF21		coord: 1..157
IPR004161	Translation elongation factor EFTu-like, domain 2	PFAM	PF03144	GTP_EFTU_D2	coord: 40..108 e-value: 6.0E-16 score: 58.6
IPR004160	Translation elongation factor EFTu/EF1A, C-terminal	PFAM	PF03143	GTP_EFTU_D3	coord: 113..160 e-value: 1.4E-13 score: 51.1
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 20..116
IPR009001	Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal	SUPERFAMILY	50465	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	coord: 113..160

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig97520	contig	P-canaliculata_contig97520:2..514 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig97520.23848.1	mRNA_P-canaliculata_contig97520.23848.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig97520 2..514 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig97520.23848.1 ID=prot_P-canaliculata_contig97520.23848.1|Name=mRNA_P-canaliculata_contig97520.23848.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=171bp
VDKIYNLVEEVDNYIPTPIRDTDKTFLMAIEDVFSITGRGTVATGKIDRG
IVKVGETVELVGLGNTKSTTVTGVEMFQKTLDEGVAGDNVGILLRGLQKT
EIERGMVLSKPGTITPHNTFESEVYVLTKEEGGRHTPFFVGYRPQFYVRT
TDVTGENLRFTDDNGSKLPE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004161	EFTu-like_2
IPR004160	Transl_elong_EFTu/EF1A_C
IPR009000	Transl_B-barrel_sf
IPR009001	Transl_elong_EF1A/Init_IF2_C