prot_P-canaliculata_contig97.23751.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig97.23751.1
Unique Nameprot_P-canaliculata_contig97.23751.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length180
Homology
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: A0A6A6PTL6_9PEZI (U2 small nuclear ribonucleoprotein A' n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PTL6_9PEZI)

HSP 1 Score: 211 bits (536), Expect = 7.430e-66
Identity = 114/178 (64.04%), Postives = 135/178 (75.84%), Query Frame = 0
Query:    1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNGM 178
            LKERELDLRGH+IP IENLG      E ID TDN I+ L NFP + RLQTLLLARNR+  I  +L+KSLPNLR LVLT N + ELADLDPL   ++L  +SL+  PV  +E+YRYY+LW+CP+IRFLD QKVKDAER +A ELFG+ D+PT+LAKSI AVR K PA   T AST NG+
Sbjct:   18 LKERELDLRGHKIPAIENLGVVAKDHECIDFTDNDISTLANFPLTPRLQTLLLARNRIASIQPNLSKSLPNLRALVLTENHVAELADLDPLQGFAKLTHLSLMGNPVVGKEHYRYYLLWRCPQIRFLDMQKVKDAERKKAVELFGTPDAPTELAKSIAAVRSKGPASF-TAASTINGV 194          
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: M2LCL5_BAUPA (U2 small nuclear ribonucleoprotein A' n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2LCL5_BAUPA)

HSP 1 Score: 210 bits (535), Expect = 1.020e-65
Identity = 111/178 (62.36%), Postives = 139/178 (78.09%), Query Frame = 0
Query:    1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNGM 178
            LKERELDLRGH+IP+IENLG  +D  E+ID TDN I++LGNFP S RLQTLL ARNR++ I   L+KS+PNL  LVLT N + ELADLDPL    +L  VSLLE  V+ +E+YRYY+LW+ P+IR+LD+QKVKDAERARA ELFG++++PT+LA+SI AVR K P    + AS  NG+
Sbjct:   18 LKERELDLRGHKIPSIENLGVAKDQ-ESIDFTDNDISVLGNFPLSPRLQTLLCARNRISSIQPGLSKSIPNLHSLVLTQNNISELADLDPLQGFVKLTHVSLLENAVTGKEHYRYYVLWRAPQIRYLDFQKVKDAERARAKELFGTYEAPTELARSIAAVRSKNPLSY-SAASVVNGV 193          
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: UPI000CE17156 (U2 small nuclear ribonucleoprotein A'-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE17156)

HSP 1 Score: 208 bits (530), Expect = 5.840e-65
Identity = 111/178 (62.36%), Postives = 133/178 (74.72%), Query Frame = 0
Query:    1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNGM 178
            L ERELDLRGH+IP +ENLG  RD  EAID TDN IT L NFP S +LQTLL ARNR++ +  SL+KSLPNL  LVLT N + ELADLDPL    +L +VSL++ PV+++E YRYYILW CP IRFLD+QKVKDAER +  ELFG+H++P+ LA+SIMAVR  T A       T NGM
Sbjct:   18 LNERELDLRGHRIPAVENLGVARD-HEAIDFTDNDITTLTNFPLSPKLQTLLCARNRISSLQQSLSKSLPNLHTLVLTQNKVAELADLDPLQGFLKLTYVSLVDNPVTSKENYRYYILWHCPSIRFLDFQKVKDAEREQGKELFGTHENPSQLAQSIMAVR-STKATSYNAVPTSNGM 193          
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: F9XJS8_ZYMTI (U2 small nuclear ribonucleoprotein A' n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9XJS8_ZYMTI)

HSP 1 Score: 202 bits (515), Expect = 1.090e-62
Identity = 104/177 (58.76%), Postives = 137/177 (77.40%), Query Frame = 0
Query:    1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNG 177
            L ERELDLRGH+IP+IENLG  +D+ E ID TDNAI  L NFP S RLQ+LL A+NR++ I  S++KS+PNL  LVLT N L EL DLDPL   ++L ++SL+  PV+++E YRY++LW+CP+IRFLD+QKVKDAER  A ELFG+HD+PT+LA+SI+A++     GR   ++T NG
Sbjct:   18 LGERELDLRGHKIPSIENLGVAKDS-ECIDFTDNAIATLANFPLSPRLQSLLCAQNRISSISESMSKSVPNLHTLVLTQNALSELVDLDPLQGFAKLTYISLIGNPVASKENYRYWLLWRCPQIRFLDFQKVKDAERRAAKELFGTHDAPTELAQSILALKSNR-LGRPGVSATANG 192          
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: M3AMP3_PSEFD (U2 small nuclear ribonucleoprotein A' n=4 Tax=Pseudocercospora TaxID=131324 RepID=M3AMP3_PSEFD)

HSP 1 Score: 201 bits (512), Expect = 1.900e-62
Identity = 104/179 (58.10%), Postives = 133/179 (74.30%), Query Frame = 0
Query:    1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNGMR 179
            L ERELDLRGH+IP IENLG  +D  E ID TDNAI +LGNFP S RLQTLL A+NR++ +  S +KS+PNL  LVLT N L EL+DL PL    +L +VSL+E PV+++E YRY+++W CP+IRFLD+ KVKDAER +  ELFG+HD P++LAKSI AV+         TA+TG+ M+
Sbjct:   18 LNERELDLRGHKIPAIENLGVAKDQ-ECIDFTDNAIQVLGNFPLSPRLQTLLCAQNRISSVSESASKSVPNLHTLVLTQNNLGELSDLVPLRGFKKLTYVSLVENPVASKENYRYWLIWNCPQIRFLDFVKVKDAEREKGKELFGTHDEPSNLAKSIAAVKSSNGLFNAPTATTGSRMK 195          
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: A0A2I0RS30_9PEZI (U2 small nuclear ribonucleoprotein A' n=5 Tax=Cercospora TaxID=29002 RepID=A0A2I0RS30_9PEZI)

HSP 1 Score: 201 bits (511), Expect = 4.420e-62
Identity = 108/178 (60.67%), Postives = 132/178 (74.16%), Query Frame = 0
Query:    1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSH-DSPTDLAKSIMAVRHKTPAGRGTTASTGNG 177
            L ERELDLRGH+IP IENLG  +D  EAID TDNAIT L  FP S RLQTLL ARNR++ I  S +KS+PNL  LVL  N L EL DLD L    +L ++SL+  PV+++E YRY++LW+CP++RFLD++KVKDAERA+A ELFGS  D PTDLAKSI+A R   P   G+ A+T NG
Sbjct:   18 LNERELDLRGHKIPQIENLGVAKDQ-EAIDFTDNAITSLAGFPLSPRLQTLLCARNRISSIAESTSKSVPNLHTLVLAQNNLNELGDLDSLEGFKKLTYLSLVGNPVASKENYRYWVLWRCPQVRFLDFEKVKDAERAKAKELFGSTTDEPTDLAKSIIAKRSNRPGAFGSGAATSNG 194          
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: UPI001D2768A7 (U2 small nuclear ribonucleoprotein n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001D2768A7)

HSP 1 Score: 201 bits (510), Expect = 6.070e-62
Identity = 102/177 (57.63%), Postives = 133/177 (75.14%), Query Frame = 0
Query:    1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNG 177
            L ERELDLRGH+IP +ENLG  +D  E ID TDN I++LGNFP S RLQTLL A+NR++ I  +++KS+PNL  LVLT N + ELADLD L   ++L ++SL E PV+ +E YRY++LW+CP +RFLD+QKVKDAER RA ELFG+ D+PT+LA+ I+A R K  +  G   + GNG
Sbjct:   18 LNERELDLRGHKIPGVENLGVAKDQ-ECIDFTDNNISMLGNFPLSNRLQTLLCAKNRISTISENMSKSVPNLHTLVLTENHINELADLDSLQGFTKLTYLSLKENPVAEKENYRYWVLWRCPSVRFLDFQKVKDAERKRAAELFGTKDAPTELAQQIIATRSKGSSFGGAPTANGNG 193          
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: A0A1W5DAW5_9LECA (U2 small nuclear ribonucleoprotein A' n=2 Tax=Lasallia pustulata TaxID=136370 RepID=A0A1W5DAW5_9LECA)

HSP 1 Score: 200 bits (509), Expect = 1.000e-61
Identity = 104/175 (59.43%), Postives = 130/175 (74.29%), Query Frame = 0
Query:    1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTG 175
            LKERELDLRGH+IP IENLG  +D  +AID TDN IT L NFP S RL TLLLARNRV  IH SLA SLPNL  L+LT N + ELADLDPL   +RL  +SLLE PV+ RE+YR++++W+CP +RFLDYQKV+DAER++A  LFG+   P+ LA  I+ ++ +T    GT ++ G
Sbjct:   18 LKERELDLRGHKIPAIENLGVAKDQ-DAIDFTDNDITTLSNFPLSPRLHTLLLARNRVTSIHPSLALSLPNLTTLILTANSVAELADLDPLRQFARLTHLSLLENPVTRREHYRHWLIWRCPSVRFLDYQKVRDAERSKARSLFGTAQEPSALASKILGIKSRTFDIPGTASANG 191          
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: UPI000CE16636 (U2 small nuclear ribonucleoprotein A'-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE16636)

HSP 1 Score: 200 bits (508), Expect = 1.260e-61
Identity = 105/166 (63.25%), Postives = 128/166 (77.11%), Query Frame = 0
Query:    1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPA 166
            L ERELDLRGH+IP IENLG  +D  EAID TDN IT L NFP S +LQTLL ARNR++ +  SLAKSLP+L  LVLT N L ELADLDPL    +L  VSL+  PV+++E YRYY+LW+CP IRFLD+QKVKDAER +  ELFG++++P+ LA+SI+AVR   PA
Sbjct:   18 LNERELDLRGHRIPAIENLGVAKD-HEAIDFTDNDITTLTNFPLSPKLQTLLCARNRISSLQPSLAKSLPSLHTLVLTQNNLAELADLDPLQGFVKLTNVSLVGNPVASKENYRYYVLWRCPSIRFLDFQKVKDAERVQGKELFGTYEAPSQLAQSIVAVRTNKPA 182          
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: A0A6G1LEW6_9PEZI (U2 small nuclear ribonucleoprotein A' n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1LEW6_9PEZI)

HSP 1 Score: 199 bits (507), Expect = 1.730e-61
Identity = 107/178 (60.11%), Postives = 130/178 (73.03%), Query Frame = 0
Query:    1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNGM 178
            L ERELDLRGH+IP IENLG  +D  EAIDLTDN I+ L NFP S RL TLL ARNR+  I  SL KS+P LR LVLT N + EL +LD L  C++LE VSL+ CPV+ RE+YRYY+LW+ P IRFLD+ KVKDAERA+A +LFG+H +P+ LA+ IMA R  +  G G  A   NG+
Sbjct:   18 LNERELDLRGHKIPAIENLGVAKD-HEAIDLTDNDISALANFPLSPRLHTLLCARNRIARIQPSLGKSVPGLRTLVLTDNLVAELGELDALQGCAKLEHVSLVGCPVTRREHYRYYLLWRAPHIRFLDFHKVKDAERAKATDLFGTHHAPSALAQQIMATR--STGGAGYAAPPRNGV 192          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A6PTL6_9PEZI7.430e-6664.04U2 small nuclear ribonucleoprotein A' n=1 Tax=Neoh... [more]
M2LCL5_BAUPA1.020e-6562.36U2 small nuclear ribonucleoprotein A' n=1 Tax=Baud... [more]
UPI000CE171565.840e-6562.36U2 small nuclear ribonucleoprotein A'-like n=1 Tax... [more]
F9XJS8_ZYMTI1.090e-6258.76U2 small nuclear ribonucleoprotein A' n=5 Tax=Zymo... [more]
M3AMP3_PSEFD1.900e-6258.10U2 small nuclear ribonucleoprotein A' n=4 Tax=Pseu... [more]
A0A2I0RS30_9PEZI4.420e-6260.67U2 small nuclear ribonucleoprotein A' n=5 Tax=Cerc... [more]
UPI001D2768A76.070e-6257.63U2 small nuclear ribonucleoprotein n=1 Tax=Passalo... [more]
A0A1W5DAW5_9LECA1.000e-6159.43U2 small nuclear ribonucleoprotein A' n=2 Tax=Lasa... [more]
UPI000CE166361.260e-6163.25U2 small nuclear ribonucleoprotein A'-like n=1 Tax... [more]
A0A6G1LEW6_9PEZI1.730e-6160.11U2 small nuclear ribonucleoprotein A' n=1 Tax=Tera... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..156
e-value: 3.7E-35
score: 122.4
NoneNo IPR availablePFAMPF14580LRR_9coord: 1..157
e-value: 9.1E-51
score: 171.8
NoneNo IPR availablePANTHERPTHR10552U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Acoord: 1..166
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 4..135
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 2..23
score: 5.348
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 47..68
score: 5.294
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 71..92
score: 7.951
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 25..46
score: 4.555

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig97contigP-canaliculata_contig97:4309..5000 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig97.23751.1mRNA_P-canaliculata_contig97.23751.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig97 4203..5000 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig97.23751.1 ID=prot_P-canaliculata_contig97.23751.1|Name=mRNA_P-canaliculata_contig97.23751.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=180bp
LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQT
LLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFV
SLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSP
TDLAKSIMAVRHKTPAGRGTTASTGNGMR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt