mRNA_P-canaliculata_contig97.23751.1 (mRNA) Pelvetia canaliculata dioecious
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Overview
Homology
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: A0A6A6PTL6_9PEZI (U2 small nuclear ribonucleoprotein A' n=1 Tax=Neohortaea acidophila TaxID=245834 RepID=A0A6A6PTL6_9PEZI) HSP 1 Score: 211 bits (537), Expect = 1.940e-65 Identity = 114/178 (64.04%), Postives = 135/178 (75.84%), Query Frame = 1
Query: 1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNGM 534
LKERELDLRGH+IP IENLG E ID TDN I+ L NFP + RLQTLLLARNR+ I +L+KSLPNLR LVLT N + ELADLDPL ++L +SL+ PV +E+YRYY+LW+CP+IRFLD QKVKDAER +A ELFG+ D+PT+LAKSI AVR K PA T AST NG+
Sbjct: 18 LKERELDLRGHKIPAIENLGVVAKDHECIDFTDNDISTLANFPLTPRLQTLLLARNRIASIQPNLSKSLPNLRALVLTENHVAELADLDPLQGFAKLTHLSLMGNPVVGKEHYRYYLLWRCPQIRFLDMQKVKDAERKKAVELFGTPDAPTELAKSIAAVRSKGPASF-TAASTINGV 194
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: M2LCL5_BAUPA (U2 small nuclear ribonucleoprotein A' n=1 Tax=Baudoinia panamericana (strain UAMH 10762) TaxID=717646 RepID=M2LCL5_BAUPA) HSP 1 Score: 211 bits (536), Expect = 2.670e-65 Identity = 111/178 (62.36%), Postives = 138/178 (77.53%), Query Frame = 1
Query: 1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNGM 534
LKERELDLRGH+IP+IENLG +D E+ID TDN I++LGNFP S RLQTLL ARNR++ I L+KS+PNL LVLT N + ELADLDPL +L VSLLE V+ +E+YRYY+LW+ P+IR+LD+QKVKDAERARA ELFG++++PT+LA+SI AVR K P AS NG+
Sbjct: 18 LKERELDLRGHKIPSIENLGVAKDQ-ESIDFTDNDISVLGNFPLSPRLQTLLCARNRISSIQPGLSKSIPNLHSLVLTQNNISELADLDPLQGFVKLTHVSLLENAVTGKEHYRYYVLWRAPQIRYLDFQKVKDAERARAKELFGTYEAPTELARSIAAVRSKNPLSYSA-ASVVNGV 193
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: UPI000CE17156 (U2 small nuclear ribonucleoprotein A'-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE17156) HSP 1 Score: 209 bits (532), Expect = 1.080e-64 Identity = 111/178 (62.36%), Postives = 133/178 (74.72%), Query Frame = 1
Query: 1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNGM 534
L ERELDLRGH+IP +ENLG RD EAID TDN IT L NFP S +LQTLL ARNR++ + SL+KSLPNL LVLT N + ELADLDPL +L +VSL++ PV+++E YRYYILW CP IRFLD+QKVKDAER + ELFG+H++P+ LA+SIMAVR T A T NGM
Sbjct: 18 LNERELDLRGHRIPAVENLGVARD-HEAIDFTDNDITTLTNFPLSPKLQTLLCARNRISSLQQSLSKSLPNLHTLVLTQNKVAELADLDPLQGFLKLTYVSLVDNPVTSKENYRYYILWHCPSIRFLDFQKVKDAEREQGKELFGTHENPSQLAQSIMAVR-STKATSYNAVPTSNGM 193
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: F9XJS8_ZYMTI (U2 small nuclear ribonucleoprotein A' n=5 Tax=Zymoseptoria TaxID=1047167 RepID=F9XJS8_ZYMTI) HSP 1 Score: 204 bits (518), Expect = 1.410e-62 Identity = 104/177 (58.76%), Postives = 137/177 (77.40%), Query Frame = 1
Query: 1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNG 531
L ERELDLRGH+IP+IENLG +D+ E ID TDNAI L NFP S RLQ+LL A+NR++ I S++KS+PNL LVLT N L EL DLDPL ++L ++SL+ PV+++E YRY++LW+CP+IRFLD+QKVKDAER A ELFG+HD+PT+LA+SI+A++ GR ++T NG
Sbjct: 18 LGERELDLRGHKIPSIENLGVAKDS-ECIDFTDNAIATLANFPLSPRLQSLLCAQNRISSISESMSKSVPNLHTLVLTQNALSELVDLDPLQGFAKLTYISLIGNPVASKENYRYWLLWRCPQIRFLDFQKVKDAERRAAKELFGTHDAPTELAQSILALKSNR-LGRPGVSATANG 192
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: M3AMP3_PSEFD (U2 small nuclear ribonucleoprotein A' n=4 Tax=Pseudocercospora TaxID=131324 RepID=M3AMP3_PSEFD) HSP 1 Score: 202 bits (514), Expect = 3.460e-62 Identity = 104/179 (58.10%), Postives = 133/179 (74.30%), Query Frame = 1
Query: 1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNGMR 537
L ERELDLRGH+IP IENLG +D E ID TDNAI +LGNFP S RLQTLL A+NR++ + S +KS+PNL LVLT N L EL+DL PL +L +VSL+E PV+++E YRY+++W CP+IRFLD+ KVKDAER + ELFG+HD P++LAKSI AV+ TA+TG+ M+
Sbjct: 18 LNERELDLRGHKIPAIENLGVAKDQ-ECIDFTDNAIQVLGNFPLSPRLQTLLCAQNRISSVSESASKSVPNLHTLVLTQNNLGELSDLVPLRGFKKLTYVSLVENPVASKENYRYWLIWNCPQIRFLDFVKVKDAEREKGKELFGTHDEPSNLAKSIAAVKSSNGLFNAPTATTGSRMK 195
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: A0A2I0RS30_9PEZI (U2 small nuclear ribonucleoprotein A' n=5 Tax=Cercospora TaxID=29002 RepID=A0A2I0RS30_9PEZI) HSP 1 Score: 202 bits (514), Expect = 5.690e-62 Identity = 108/178 (60.67%), Postives = 132/178 (74.16%), Query Frame = 1
Query: 1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSH-DSPTDLAKSIMAVRHKTPAGRGTTASTGNG 531
L ERELDLRGH+IP IENLG +D EAID TDNAIT L FP S RLQTLL ARNR++ I S +KS+PNL LVL N L EL DLD L +L ++SL+ PV+++E YRY++LW+CP++RFLD++KVKDAERA+A ELFGS D PTDLAKSI+A R P G+ A+T NG
Sbjct: 18 LNERELDLRGHKIPQIENLGVAKDQ-EAIDFTDNAITSLAGFPLSPRLQTLLCARNRISSIAESTSKSVPNLHTLVLAQNNLNELGDLDSLEGFKKLTYLSLVGNPVASKENYRYWVLWRCPQVRFLDFEKVKDAERAKAKELFGSTTDEPTDLAKSIIAKRSNRPGAFGSGAATSNG 194
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: UPI001D2768A7 (U2 small nuclear ribonucleoprotein n=1 Tax=Passalora fulva TaxID=5499 RepID=UPI001D2768A7) HSP 1 Score: 202 bits (513), Expect = 7.810e-62 Identity = 102/177 (57.63%), Postives = 133/177 (75.14%), Query Frame = 1
Query: 1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNG 531
L ERELDLRGH+IP +ENLG +D E ID TDN I++LGNFP S RLQTLL A+NR++ I +++KS+PNL LVLT N + ELADLD L ++L ++SL E PV+ +E YRY++LW+CP +RFLD+QKVKDAER RA ELFG+ D+PT+LA+ I+A R K + G + GNG
Sbjct: 18 LNERELDLRGHKIPGVENLGVAKDQ-ECIDFTDNNISMLGNFPLSNRLQTLLCAKNRISTISENMSKSVPNLHTLVLTENHINELADLDSLQGFTKLTYLSLKENPVAEKENYRYWVLWRCPSVRFLDFQKVKDAERKRAAELFGTKDAPTELAQQIIATRSKGSSFGGAPTANGNG 193
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: A0A1W5DAW5_9LECA (U2 small nuclear ribonucleoprotein A' n=2 Tax=Lasallia pustulata TaxID=136370 RepID=A0A1W5DAW5_9LECA) HSP 1 Score: 201 bits (511), Expect = 1.830e-61 Identity = 104/175 (59.43%), Postives = 130/175 (74.29%), Query Frame = 1
Query: 1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTG 525
LKERELDLRGH+IP IENLG +D +AID TDN IT L NFP S RL TLLLARNRV IH SLA SLPNL L+LT N + ELADLDPL +RL +SLLE PV+ RE+YR++++W+CP +RFLDYQKV+DAER++A LFG+ P+ LA I+ ++ +T GT ++ G
Sbjct: 18 LKERELDLRGHKIPAIENLGVAKDQ-DAIDFTDNDITTLSNFPLSPRLHTLLLARNRVTSIHPSLALSLPNLTTLILTANSVAELADLDPLRQFARLTHLSLLENPVTRREHYRHWLIWRCPSVRFLDYQKVRDAERSKARSLFGTAQEPSALASKILGIKSRTFDIPGTASANG 191
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: A0A6G1LEW6_9PEZI (U2 small nuclear ribonucleoprotein A' n=1 Tax=Teratosphaeria nubilosa TaxID=161662 RepID=A0A6G1LEW6_9PEZI) HSP 1 Score: 200 bits (509), Expect = 3.150e-61 Identity = 107/178 (60.11%), Postives = 130/178 (73.03%), Query Frame = 1
Query: 1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPAGRGTTASTGNGM 534
L ERELDLRGH+IP IENLG +D EAIDLTDN I+ L NFP S RL TLL ARNR+ I SL KS+P LR LVLT N + EL +LD L C++LE VSL+ CPV+ RE+YRYY+LW+ P IRFLD+ KVKDAERA+A +LFG+H +P+ LA+ IMA R + G G A NG+
Sbjct: 18 LNERELDLRGHKIPAIENLGVAKD-HEAIDLTDNDISALANFPLSPRLHTLLCARNRIARIQPSLGKSVPGLRTLVLTDNLVAELGELDALQGCAKLEHVSLVGCPVTRREHYRYYLLWRAPHIRFLDFHKVKDAERAKATDLFGTHHAPSALAQQIMATR--STGGAGYAAPPRNGV 192
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Match: UPI000CE16636 (U2 small nuclear ribonucleoprotein A'-like n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE16636) HSP 1 Score: 200 bits (508), Expect = 4.600e-61 Identity = 105/166 (63.25%), Postives = 128/166 (77.11%), Query Frame = 1
Query: 1 LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTLLLARNRVNCIHSSLAKSLPNLRCLVLTGNPLEELADLDPLHACSRLEFVSLLECPVSAREYYRYYILWQCPKIRFLDYQKVKDAERARANELFGSHDSPTDLAKSIMAVRHKTPA 498
L ERELDLRGH+IP IENLG +D EAID TDN IT L NFP S +LQTLL ARNR++ + SLAKSLP+L LVLT N L ELADLDPL +L VSL+ PV+++E YRYY+LW+CP IRFLD+QKVKDAER + ELFG++++P+ LA+SI+AVR PA
Sbjct: 18 LNERELDLRGHRIPAIENLGVAKD-HEAIDFTDNDITTLTNFPLSPKLQTLLCARNRISSLQPSLAKSLPSLHTLVLTQNNLAELADLDPLQGFVKLTNVSLVGNPVASKENYRYYVLWRCPSIRFLDFQKVKDAERVQGKELFGTYEAPSQLAQSIVAVRTNKPA 182 The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig97.23751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-canaliculata_contig97.23751.1 >prot_P-canaliculata_contig97.23751.1 ID=prot_P-canaliculata_contig97.23751.1|Name=mRNA_P-canaliculata_contig97.23751.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=180bp LKERELDLRGHQIPTIENLGGTRDAFEAIDLTDNAITLLGNFPRSLRLQTback to top mRNA from alignment at P-canaliculata_contig97:4203..5000- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-canaliculata_contig97.23751.1 ID=mRNA_P-canaliculata_contig97.23751.1|Name=mRNA_P-canaliculata_contig97.23751.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=798bp|location=Sequence derived from alignment at P-canaliculata_contig97:4203..5000- (Pelvetia canaliculata dioecious)back to top Coding sequence (CDS) from alignment at P-canaliculata_contig97:4203..5000- >mRNA_P-canaliculata_contig97.23751.1 ID=mRNA_P-canaliculata_contig97.23751.1|Name=mRNA_P-canaliculata_contig97.23751.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at P-canaliculata_contig97:4203..5000- (Pelvetia canaliculata dioecious)back to top |