prot_P-canaliculata_contig9435.23457.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig9435.23457.1
Unique Nameprot_P-canaliculata_contig9435.23457.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length298
Homology
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BLAST of mRNA_P-canaliculata_contig9435.23457.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.510e-12
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 0 
Query:   70 PSKLRRSCDRCTMRKIRCDGSGVRCKRCESDGQACHYSLKAKSGPKPQGAR 120
            P  LR SCDRCTMRKI+CDG   +C+RC+ D Q CHYSLK+KSGPKP   R
Sbjct:  418 PKPLRTSCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIR 468
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BLAST of mRNA_P-canaliculata_contig9435.23457.1 vs. uniprot
Match: A0A6H5L603_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L603_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.240e-11
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 0 
Query:   76 SCDRCTMRKIRCDGSGVRCKRCESDGQACHYSLKAKSGPKPQGARNLATSPLSDGKES 133
            SCDRCTMRKI+CDG   +C+RC+ D Q CHYSLK+KSGPKP   R   +SP S  +ES
Sbjct:  474 SCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRRK-SSPRSPREES 530
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BLAST of mRNA_P-canaliculata_contig9435.23457.1 vs. uniprot
Match: K8YU74_NANGC (Tpa: zn 2cys6 transcription factor n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YU74_NANGC)

HSP 1 Score: 58.9 bits (141), Expect = 4.530e-6
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0 
Query:   68 KTPSKLRRSCDRCTMRKIRCDGSGVRCKRCESDGQACHYSLKAKSGPK 115
            ++  KLRRSCDRCT +KIRCDG    C+ C   G ACHYS + ++GPK
Sbjct:    7 RSRKKLRRSCDRCTSKKIRCDGLAA-CQNCVRRGYACHYSERRRTGPK 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9435.23457.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLU9_ECTSI4.510e-1266.67C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
A0A6H5L603_9PHAE5.240e-1162.07Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
K8YU74_NANGC4.530e-656.25Tpa: zn 2cys6 transcription factor n=3 Tax=Monodop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 216..236
IPR001138Zn(2)-C6 fungal-type DNA-binding domainSMARTSM00066gal4_2coord: 71..115
e-value: 1.2E-5
score: 34.8
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPFAMPF00172Zn_cluscoord: 75..111
e-value: 2.4E-5
score: 24.4
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS00463ZN2_CY6_FUNGAL_1coord: 76..104
IPR001138Zn(2)-C6 fungal-type DNA-binding domainPROSITEPS50048ZN2_CY6_FUNGAL_2coord: 76..106
score: 9.259
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilyGENE3D4.10.240.10coord: 68..127
e-value: 7.0E-10
score: 40.7
IPR036864Zn(2)-C6 fungal-type DNA-binding domain superfamilySUPERFAMILY57701Zn2/Cys6 DNA-binding domaincoord: 70..111

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9435contigP-canaliculata_contig9435:1876..5150 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9435.23457.1mRNA_P-canaliculata_contig9435.23457.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig9435 536..5198 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig9435.23457.1 ID=prot_P-canaliculata_contig9435.23457.1|Name=mRNA_P-canaliculata_contig9435.23457.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=298bp
MNLLLLPQETAGSSIAPMEIPLQSALALPAVTLPVGTPERGTVSGGPGEG
DGAIRNQFCLKTTTGFVKTPSKLRRSCDRCTMRKIRCDGSGVRCKRCESD
GQACHYSLKAKSGPKPQGARNLATSPLSDGKESAAGAAGIPRPDQNATPA
NSAEASSSASREIKSTNAGTPWLPAGAVPEVTFSPAAALEAHSQAPAPME
TDPVHDLTLSMVGRTMEELERERGEAAEVAAVAEQTAVAAAAAAAAAAAA
ASAASTGTTAGNSVEMETKDGARMSETGAAFRPAGSAEGSDGRGHDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001138Zn2-C6_fun-type_DNA-bd
IPR036864Zn2-C6_fun-type_DNA-bd_sf