mRNA_P-canaliculata_contig9435.23457.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9435.23457.1
Unique NamemRNA_P-canaliculata_contig9435.23457.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
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BLAST of mRNA_P-canaliculata_contig9435.23457.1 vs. uniprot
Match: D7FLU9_ECTSI (C6 transcription factor Prf n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLU9_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.620e-12
Identity = 54/123 (43.90%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:   40 SEGMNLLLLPQETAGSSIAPMEIPLQSALALPAVTLPVGTPERGTVSGGPGEGDGAIRNQFCLKTTTGFVKTPSKLRRSCDRCTMRKIRCDGSGVRCKRCESDGQACHYSLKAKSGPKPQGAR 408
            S+G+NLLLL QE            LQ A   P  +   G P   T +  P E  G+  N    +        P  LR SCDRCTMRKI+CDG   +C+RC+ D Q CHYSLK+KSGPKP   R
Sbjct:  363 SQGLNLLLLSQE------------LQEAAGTPRPS--AGAPVSSTKT--PAERSGSSENGRG-RDAGSKPAGPKPLRTSCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIR 468
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BLAST of mRNA_P-canaliculata_contig9435.23457.1 vs. uniprot
Match: A0A6H5L603_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L603_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 7.780e-10
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:  274 SCDRCTMRKIRCDGSGVRCKRCESDGQACHYSLKAKSGPKPQGARNLATSPLSDGKES 447
            SCDRCTMRKI+CDG   +C+RC+ D Q CHYSLK+KSGPKP   R   +SP S  +ES
Sbjct:  474 SCDRCTMRKIKCDGREGKCQRCDRDNQFCHYSLKSKSGPKPNSIRRK-SSPRSPREES 530
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BLAST of mRNA_P-canaliculata_contig9435.23457.1 vs. uniprot
Match: K8YU74_NANGC (Tpa: zn 2cys6 transcription factor n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YU74_NANGC)

HSP 1 Score: 58.9 bits (141), Expect = 3.220e-5
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  250 KTPSKLRRSCDRCTMRKIRCDGSGVRCKRCESDGQACHYSLKAKSGPK 393
            ++  KLRRSCDRCT +KIRCDG    C+ C   G ACHYS + ++GPK
Sbjct:    7 RSRKKLRRSCDRCTSKKIRCDGLAA-CQNCVRRGYACHYSERRRTGPK 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9435.23457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLU9_ECTSI2.620e-1243.90C6 transcription factor Prf n=1 Tax=Ectocarpus sil... [more]
A0A6H5L603_9PHAE7.780e-1062.07Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
K8YU74_NANGC3.220e-556.25Tpa: zn 2cys6 transcription factor n=3 Tax=Monodop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9435contigP-canaliculata_contig9435:536..5198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size2282
Cds size894
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9435.23457.1prot_P-canaliculata_contig9435.23457.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9435 1876..5150 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817310.5878732-UTR-P-canaliculata_contig9435:535..18751622817310.5878732-UTR-P-canaliculata_contig9435:535..1875Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9435 536..1875 -
1693495215.6100497-UTR-P-canaliculata_contig9435:535..18751693495215.6100497-UTR-P-canaliculata_contig9435:535..1875Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9435 536..1875 -
1622817310.636651-UTR-P-canaliculata_contig9435:5150..51981622817310.636651-UTR-P-canaliculata_contig9435:5150..5198Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9435 5151..5198 -
1693495215.6484976-UTR-P-canaliculata_contig9435:5150..51981693495215.6484976-UTR-P-canaliculata_contig9435:5150..5198Pelvetia canaliculata dioeciousUTRP-canaliculata_contig9435 5151..5198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817310.6011724-CDS-P-canaliculata_contig9435:1875..23401622817310.6011724-CDS-P-canaliculata_contig9435:1875..2340Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9435 1876..2340 -
1693495215.6198988-CDS-P-canaliculata_contig9435:1875..23401693495215.6198988-CDS-P-canaliculata_contig9435:1875..2340Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9435 1876..2340 -
1622817310.612773-CDS-P-canaliculata_contig9435:2617..27591622817310.612773-CDS-P-canaliculata_contig9435:2617..2759Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9435 2618..2759 -
1693495215.6287546-CDS-P-canaliculata_contig9435:2617..27591693495215.6287546-CDS-P-canaliculata_contig9435:2617..2759Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9435 2618..2759 -
1622817310.6246736-CDS-P-canaliculata_contig9435:4863..51501622817310.6246736-CDS-P-canaliculata_contig9435:4863..5150Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9435 4864..5150 -
1693495215.6377542-CDS-P-canaliculata_contig9435:4863..51501693495215.6377542-CDS-P-canaliculata_contig9435:4863..5150Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9435 4864..5150 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9435.23457.1

>prot_P-canaliculata_contig9435.23457.1 ID=prot_P-canaliculata_contig9435.23457.1|Name=mRNA_P-canaliculata_contig9435.23457.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=298bp
MNLLLLPQETAGSSIAPMEIPLQSALALPAVTLPVGTPERGTVSGGPGEG
DGAIRNQFCLKTTTGFVKTPSKLRRSCDRCTMRKIRCDGSGVRCKRCESD
GQACHYSLKAKSGPKPQGARNLATSPLSDGKESAAGAAGIPRPDQNATPA
NSAEASSSASREIKSTNAGTPWLPAGAVPEVTFSPAAALEAHSQAPAPME
TDPVHDLTLSMVGRTMEELERERGEAAEVAAVAEQTAVAAAAAAAAAAAA
ASAASTGTTAGNSVEMETKDGARMSETGAAFRPAGSAEGSDGRGHDG*
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mRNA from alignment at P-canaliculata_contig9435:536..5198-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9435.23457.1 ID=mRNA_P-canaliculata_contig9435.23457.1|Name=mRNA_P-canaliculata_contig9435.23457.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=4663bp|location=Sequence derived from alignment at P-canaliculata_contig9435:536..5198- (Pelvetia canaliculata dioecious)
CCCCTCGGCCCCGCAGGAATACCTCCACCGAAACCTTCCTCCGAAGGGAT
GAACCTTCTGCTTCTCCCGCAGGAGACGGCAGGCTCGTCGATTGCTCCGA
TGGAGATACCGCTGCAAAGCGCTTTGGCCTTGCCTGCGGTGACCTTGCCC
GTGGGTACACCAGAACGTGGAACCGTCAGCGGGGGCCCTGGTGAGGGGGA
TGGGGCAATCCGGAACCAATTCTGTCTAAAAACGACTACCGGGTTTGTGA
AGACTCCCTCGAAGCTCCGGCGATCGTGCGACAGGTGTACCATGCGAAAG
ATCCGGTGCGACGGGAGCGGGGTCAGGTGCAAGAGGTGGGTAATAGGAAT
ATACGGTTGCACATAGGTTTAGATTGGCGTATGGTTGCATCAGCGGTTTG
ATGATTTGGTAATACAAGACGAGAGCCAGACCTTCGTCTTTTTACGAAGA
AAGGTGAGGCGGATGTGACACTTGAAGGCTGCCGTACACTCAGTACCAGT
ATGAAATTTCATCGAAGACTTGGATGTTTTTAGAGCTGTTCCTGTTTGCA
AAAAAAGATGAATTTCTTGACTAAGGGTGGATTTCATTGTAGAAAAGGGG
TCTTCCCGGGGCACTTTTATTTTATGCGCGGGCACTCATTGATTGAACTG
ACGGAGGATGATAACAGTCCTGATATCATGGTACATAGCATGTACATATA
TGTACTGCTGCATTCATAGTACATAATATGTACCGGTACCGCTGTGGTCA
CACATATATAATATGCATGTAGCATTGAACCGTACACGAATGTACATGTA
CCCCCAAAAATATATATATGTAAACAAGTACAAACAGCAGTACATACTCG
TATGTACTTACCACAGATGCATCTGCAAGGACACTTCATTTCCTTGTTCA
GCTGACCACGAGCAAATTTGGCGACCTTACGCGGTTGATCCGTACTCTGT
TACAATTAAGTGGTGACCGTACATACTAAACACACGTACATATCATCAGC
AGTAGTACCTGTCTGCTGTACCAATAACAAAGCTGAATATCAATTGTCTG
TGAAGCATACCATATCCATTGTTTTTTCTTGTATCGATGTATTTAGCCCC
ACCAGACTAGTTATTATGTCGATTTTGTGACAAATTGTATTGCATACCGA
GTGTTATCTCTCCCGGCGGATTTCAGAACCAAATAGCTCAAACTTCTGAT
GGCGCACAAGCTTAAATAATCTACAAAAGCGTAAAACATTTAGGTATCTT
TGTGTGATGATTGCAATTGGTTCGCGAGCGTGTGCATAAAGCAAGGTGAC
TTCCAGTTGAGGCGTTCCAAGAGGGTAACTGTTGCGCCGCACAGGCTTTC
AACTACAACAAAAGAGACGATTTTTCCATCGTAGCTCGGTTTCGTGTGCT
AATTCCAGCTGACATGTTTACCTAAATCCCACATACGATGCTGCTTGCAG
TGTTGTGAGCTCGGGGGCTTTTTGCGGCGTGAATGGAATGCATTTGGTCG
GCTGAGACAGGTTTCGGTTCACATCCACACCACAAACTTTCTCGCCCGCC
GTCCTCGACCGTCCTCGACGCAAACTCAACCGTTTCGGCCGGTACGCGTA
TTGGAAGTGTGGGCTTGGATACACGATGTACAAGAGTTTGGTCGTCTAAC
TTGAGCACTTAGCTCAGGAGAACGCAAACCTGAAACACAGAGTCTCTACC
GGTGCCTGCCACTGAAGCGGACCCCGGACAGTTGCACGATTCGGCGCAAA
TACGAGCGGCGACGATTGCATTCCACATGGAGCACGAAAATACCCGAAAT
TTTCAGGAAGCCCATGTCTCTCAACGGCGAACACTTTCGTATCTTGCGGG
TCAGCTATCTTTTCTTGTGGGCTGATCTCTATTTCTGCCATCCCTGTCAT
AAGTGCTACAGCCCTTGATAAAAGCTGCAAATGGCCCAAATGGCGGCATT
TCATTGAAGCAGACATTCAGCCGCATTTATTTTTATTTTTGTAACCGACG
ATATTTTGGAGTACAAAAAGCAAAAAAACGGGTATCGGGGAACGATCGTA
CATAGTGCAACCTTAAGAGAGTAAGAATGAAAAATGAGAATGATGTAAAA
CCAGCGCAAAGTGGAGCGCTTACTTTATTTTACAAGCCCGTTGGCCGAGG
CCTATAAGAGAGGTGTCGCCACGTATCTCGTTGATAAAAAACGCAGAACG
TTCTCCGCCATACCATCTTCTGGGCTCCGTCTGTTGGCGATGTATGTTGG
TGGCTGCCTGTCTGTTTGTGACCGCCCGACTCTTAGTGACCGCCTGTCTT
TTGGTGACCGCCTGTCTGTTGATGACCGCCTAACTCTTAGTGACCGCCTG
TCTTTTGGCGACCGCCTGTTTGATTGTGACTGCCTGTCTGTTGATGACCG
CCTGTCTGTTTGCGACGGCATGTCTGTTGACGACCACAGGTGCGAAAGTG
ATGGACAGGCGTGTCACTACAGCCTCAAGGCAAAATCCGGCCCCAAACCT
CAAGGGGCGCGGAACCTGGCGACGTCACCGTTGTCCGACGGCAAAGAGAG
TGCTGCGGGAGCGGCAGGAATCCCGCGGCCGGTGAGCGACAGGCGCATGC
CTTCGAGATTATATCAACGTGTTGGGGGGAGGGGGGGGAAAGTGAGACAT
TTTTTGCCGCCATTCATCTCTTGTTTTCGTGCTTCCGAGTCTACTCTTGT
GATACGTTGGTATACTTTTTGTGGCAAGAAAATAAAAATAAAAATGCTAT
GTGTCAATATTATACTATGTAGTATAGTGTCCTATCAGCGTTGGGGGGGC
ATTACCGTACATGGCATTCAAGTGGGGTCATGGCCTCTTTTCTGTCTCTG
CTCAACAGGATCAGAACGCGACGCCGGCAAACAGCGCCGAGGCATCATCG
TCTGCCAGCCGAGAAATCAAATCGACCAATGCTGGCACGCCTTGGTTGCC
TGCTGGCGCAGTTCCCGAAGTAACATTTTCTCCCGCAGCTGCCCTCGAGG
CGCACTCGCAAGCGCCCGCGCCTATGGAGACCGACCCTGTCCACGATCTC
ACTCTTAGTATGGTGGGGAGGACGATGGAAGAGTTGGAAAGGGAGCGAGG
TGAGGCGGCCGAGGTCGCTGCCGTGGCTGAACAGACGGCTGTTGCCGCCG
CTGCCGCCGCTGCCGCCGCCGCCGCTGCTGCTTCTGCCGCCTCGACGGGA
ACTACAGCAGGCAACAGCGTCGAGATGGAAACAAAGGACGGTGCGCGTAT
GAGTGAAACTGGCGCAGCGTTCCGCCCAGCGGGTTCCGCGGAGGGGTCGG
ATGGGCGTGGACATGATGGATAGGGGGTCGCTCCTTGTCTCTAGGCCTCA
CCACAGACGGGTGGCGTCGAGGCACCAAGCAAGGCTATCGCGCTGCTTTC
GCCGAAAAAGGTCCTCATCCCCGATATCTTACCTTCCCAAGGGTTCGGTG
GCAGTCGAGTAGGCCTCATATGATCGGACTGTTTTCGCTCCCCGAGTACC
ACTCTTAATACTCTATACAGAAAACGTGATGTACGAGCAGCAATTGCTTC
GCCTACGCGGCCTATGCTGTAGGCCGATGCGGTAGGCTGATGCTGCAGGC
CGATGCTGTAAGCTAATGCTGTATTAATAGATGGATGCTGTAACAGGTAA
CGGCAAGGTGACGGCGATAAGAGATAAGTTTCACTCTTAATACAGCAGTT
CGAGAGTTCACGATTGATATAACTAGGGGGCAAGGGTAAATACAAGCACA
ATATAAGAGTAGCTGTAATCCTTTGATGCATAAATAACACGACCAACCTC
CCGTGCTCGATGCTTGCTTAAGTCTAGAGCCGAAGAGTGACTGCGTAGTT
ACTAGATTGAGTGTCGTTAATTTCATACTAGTCATCGTATACTATACTAT
TATACTAGTGTTGGATGTTTTACCTACAGAAGCTGACGGCCGAGCTCCCG
GTCGTCGTGGGGCTTTTACTCTTGTCGTTCCTTTGGGTTTGGACACCCTC
TTACGGAGAGCTCTCAAGCAAAACTCGTTTTTTCTGAAGTACACAAGCAA
TATTTTTGTGAATTCCAGGGTTTTCATGATGCTTTGTTATCTCTTTGAGT
GTTGCGTGCTTTCCATGGCGCATATGTCGTAGGGCCCTAGTCTCGAGGCT
GGCTCTCACCACAGGTAGGGTACTACTCTAGGTTAGAGCTACTTAAATCC
GTTCAACGCACCAAGTATTTCCTGCCTTTACGTCGTATAATAGTAAGGGC
TTGGCTTGGCCCTCACGCTAAAGTGCGCTTTTCATTTTCTTTCCTGCGTT
ATTATTGAGAATGTGAGGCTATAACCTGTCAAGAATTTGTGGCGCTGGTT
CCGTAGGAAAATATGCTTGGAACTAAGCGGTTGGGATAAAGGGGGTGAAC
CACACTTTGGTATCAAAACCAGCTCAATGGTGTTTGAAGTGGTTGCGGTA
GTGATCAGGCAATGTGCCTTGAAGAACTGTTTGTGGCAGATGGTTTTGGG
TTGCGAATGGGGAGAAAAGGGGAGTGACCACCGAGGGGTGGTGCTTCTTC
ATCTTTAATATGACTCGCATAGATAGTATAATCAAGAACATACAGCTACT
CTCTAGTGTATTTCAATCCCATTGGCTATCTACTTCCGAATGCCCGACTT
TCTAGAAGCATCA
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Coding sequence (CDS) from alignment at P-canaliculata_contig9435:536..5198-

>mRNA_P-canaliculata_contig9435.23457.1 ID=mRNA_P-canaliculata_contig9435.23457.1|Name=mRNA_P-canaliculata_contig9435.23457.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1788bp|location=Sequence derived from alignment at P-canaliculata_contig9435:536..5198- (Pelvetia canaliculata dioecious)
ATGAACCTTCTGCTTCTCCCGCAGGAGACGGCAGGCTCGTCGATTGCTCC
GATGGAGATACCGCTGCAAAGCGCTTTGGCCTTGCCTGCGGTGACCTTGC
CCGTGGGTACACCAGAACGTGGAACCGTCAGCGGGGGCCCTGGTGAGGGG
GATGGGGCAATCCGGAACCAATTCTGTCTAAAAACGACTACCGGGTTTGT
GAAGACTCCCTCGAAGCTCCGGCGATCGTGCGACAGGTGTACCATGCGAA
AGATCCGGTGCGACGGGAGCGGGGTCAGGTGCAAGAGATGAACCTTCTGC
TTCTCCCGCAGGAGACGGCAGGCTCGTCGATTGCTCCGATGGAGATACCG
CTGCAAAGCGCTTTGGCCTTGCCTGCGGTGACCTTGCCCGTGGGTACACC
AGAACGTGGAACCGTCAGCGGGGGCCCTGGTGAGGGGGATGGGGCAATCC
GGAACCAATTCTGTCTAAAAACGACTACCGGGTTTGTGAAGACTCCCTCG
AAGCTCCGGCGATCGTGCGACAGGTGTACCATGCGAAAGATCCGGTGCGA
CGGGAGCGGGGTCAGGTGCAAGAGGTGCGAAAGTGATGGACAGGCGTGTC
ACTACAGCCTCAAGGCAAAATCCGGCCCCAAACCTCAAGGGGCGCGGAAC
CTGGCGACGTCACCGTTGTCCGACGGCAAAGAGAGTGCTGCGGGAGCGGC
AGGAATCCCGCGGCCGGTGCGAAAGTGATGGACAGGCGTGTCACTACAGC
CTCAAGGCAAAATCCGGCCCCAAACCTCAAGGGGCGCGGAACCTGGCGAC
GTCACCGTTGTCCGACGGCAAAGAGAGTGCTGCGGGAGCGGCAGGAATCC
CGCGGCCGGATCAGAACGCGACGCCGGCAAACAGCGCCGAGGCATCATCG
TCTGCCAGCCGAGAAATCAAATCGACCAATGCTGGCACGCCTTGGTTGCC
TGCTGGCGCAGTTCCCGAAGTAACATTTTCTCCCGCAGCTGCCCTCGAGG
CGCACTCGCAAGCGCCCGCGCCTATGGAGACCGACCCTGTCCACGATCTC
ACTCTTAGTATGGTGGGGAGGACGATGGAAGAGTTGGAAAGGGAGCGAGG
TGAGGCGGCCGAGGTCGCTGCCGTGGCTGAACAGACGGCTGTTGCCGCCG
CTGCCGCCGCTGCCGCCGCCGCCGCTGCTGCTTCTGCCGCCTCGACGGGA
ACTACAGCAGGCAACAGCGTCGAGATGGAAACAAAGGACGGTGCGCGTAT
GAGTGAAACTGGCGCAGCGTTCCGCCCAGCGGGTTCCGCGGAGGGGTCGG
ATGGGCGTGGACATGATGGATAGGATCAGAACGCGACGCCGGCAAACAGC
GCCGAGGCATCATCGTCTGCCAGCCGAGAAATCAAATCGACCAATGCTGG
CACGCCTTGGTTGCCTGCTGGCGCAGTTCCCGAAGTAACATTTTCTCCCG
CAGCTGCCCTCGAGGCGCACTCGCAAGCGCCCGCGCCTATGGAGACCGAC
CCTGTCCACGATCTCACTCTTAGTATGGTGGGGAGGACGATGGAAGAGTT
GGAAAGGGAGCGAGGTGAGGCGGCCGAGGTCGCTGCCGTGGCTGAACAGA
CGGCTGTTGCCGCCGCTGCCGCCGCTGCCGCCGCCGCCGCTGCTGCTTCT
GCCGCCTCGACGGGAACTACAGCAGGCAACAGCGTCGAGATGGAAACAAA
GGACGGTGCGCGTATGAGTGAAACTGGCGCAGCGTTCCGCCCAGCGGGTT
CCGCGGAGGGGTCGGATGGGCGTGGACATGATGGATAG
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