prot_P-canaliculata_contig9362.23369.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-canaliculata_contig9362.23369.1
Unique Name	prot_P-canaliculata_contig9362.23369.1
Type	polypeptide
Organism	Pelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length	167

Homology

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BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: D7G4N5_ECTSI (3'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4N5_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 6.000e-97
Identity = 142/168 (84.52%), Postives = 153/168 (91.07%), Query Frame = 0

Query:    1 MAVREGPWQSINDHDFILRSLRKGKRVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATGSGE-RSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 167
            MA+REGPWQS NDHDFILRSLR G+R DGR+L DMRLLRMVF+RAEGQ+SAEIQLGRTRVL V TGEVVPPFPDR TEGFLHFNVEL  MAA   GE R+S +S EIARVIEIGVRDSQALDTEALCIIGGEKVWQ+RCD+H+LDHGGNL+DACTLATMAALRHFRRP
Sbjct:    1 MAIREGPWQSKNDHDFILRSLRGGRRADGRQLGDMRLLRMVFARAEGQASAEIQLGRTRVLGVVTGEVVPPFPDRPTEGFLHFNVELGPMAAASVGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEKVWQLRCDVHILDHGGNLIDACTLATMAALRHFRRP 168

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BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: A0A6H5KDM4_9PHAE (RNase_PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM4_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 1.450e-84
Identity = 137/168 (81.55%), Postives = 149/168 (88.69%), Query Frame = 0

Query:    1 MAVREGPWQSINDHDFILRSLRKGKRVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATGSGE-RSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 167
            MA+REGPWQS ND++FILRSLR G+RVDGR L DMRLLRMVF+RAEGQ+SAEIQLGRTRVL V TGEVVPPFPDR  EGFLHFNVEL  MAA   GE R+S +S EIARVIEIGVRDSQALDTEALCIIGGEK   +RCD+H+LDHGGNL+DACTLATMAALRHFRRP
Sbjct:    1 MAIREGPWQSKNDYEFILRSLRGGRRVDGRELGDMRLLRMVFARAEGQASAEIQLGRTRVLGVVTGEVVPPFPDRPMEGFLHFNVELGPMAAASMGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEK---LRCDVHILDHGGNLIDACTLATMAALRHFRRP 165

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BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: A0A835ZEC1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC1_9STRA)

HSP 1 Score: 194 bits (494), Expect = 7.910e-57
Identity = 98/169 (57.99%), Postives = 128/169 (75.74%), Query Frame = 0

Query:    1 MAVREGPWQSINDHDFILRSLRKGK-RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATGSGE-RSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 167
            MA+R+G   +IN + F+L +LR GK R+DGR L  +R +   F+R+EGQ+S  +Q GRT+ LAV + EVVPP+PDR T+G L FNVELS MA    G  R+S ++ EI R+IE G+RDSQALDTE LCI+ GEKVWQ+R D+H+LD+GGNL+DA  LA +AAL+HFRRP
Sbjct:    1 MAIRDGFTHTINTNAFVLETLRGGKQRIDGRELNTLRQIAFQFTRSEGQASVLVQWGRTQTLAVVSAEVVPPYPDRPTDGALMFNVELSKMAEASVGLLRASPLATEITRIIERGIRDSQALDTETLCIVAGEKVWQLRVDVHILDNGGNLVDAAALAAIAALQHFRRP 169

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BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: A0A3M6VKF7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKF7_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.240e-52
Identity = 96/178 (53.93%), Postives = 126/178 (70.79%), Query Frame = 0

Query:    1 MAVREG-PWQSINDHDFILRSLRKGK--RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAA--------TGSGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 167
            MA+R+   + S N+  F+   LR+    R DGR L   R +R+ F R+E +S AE+QLGRTRV+    GE+VPPFPDR TEGFLHF+VELS MA+           G  SS+V+AE+AR++E GVR+S+ALDTEAL ++ GEKVW I C +HV+DHGGNL+DA +LA +AAL H+RRP
Sbjct:    1 MALRDDHDFLSENERQFLANCLRQSPHVRADGRELLQQRKIRVQFRRSESESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHFSVELSPMASPSFDASSSASRGAASSVVAAELARLVERGVRESRALDTEALAVVAGEKVWAITCHVHVVDHGGNLVDAASLAAIAALMHYRRP 178

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BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: G4ZFL2_PHYSP (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4ZFL2_PHYSP)

HSP 1 Score: 182 bits (463), Expect = 3.480e-52
Identity = 97/178 (54.49%), Postives = 125/178 (70.22%), Query Frame = 0

Query:    1 MAVR-EGPWQSINDHDFILRSLRKGK--RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAA--------TGSGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 167
            MA+R E  + S N+  F+   LR+    R DGR L   R +R+ F R+E +S AE+QLGRTRV+    GE+VPPFPDR TEGFLHF VELS MA+         G G  SS+ +AE+AR++E GVR+S+ALDTEAL ++ GEKVW I C +HV+DHGGNL+DA +LA +AAL H+RRP
Sbjct:    1 MALRDEHDFLSENERQFLANCLRQPPHVRADGRELLQQRKIRVQFRRSETESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHFAVELSPMASPSFEAAASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAITCHVHVVDHGGNLVDAASLAAIAALMHYRRP 178

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BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: A0A3R7K5I2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K5I2_9STRA)

HSP 1 Score: 179 bits (455), Expect = 5.380e-51
Identity = 96/185 (51.89%), Postives = 124/185 (67.03%), Query Frame = 0

Query:    1 MAVREGPWQSINDHDFILRSLRK----------GKRVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAA--------TGSGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 167
            MA+R+       DHDF+  S R+            R DGR L   R +R+ F R++ +S AE+QLGRTRV+    GE+VPPFPDR TEGFLHF VELS MA+         G G  SS+ +AE+AR++E GVR+S+ALDTEAL ++ GEKVW I C +HV+DHGGNL+DA +LA +AAL H+RRP
Sbjct:    1 MALRD-------DHDFLSESERQFLANCIRQPPHVRADGRELLQQRKIRVQFRRSDSESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHFAVELSPMASPSFEASASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAITCHVHVVDHGGNLVDAASLAAIAALMHYRRP 178

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BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: M4BRP2_HYAAE (RNase_PH domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRP2_HYAAE)

HSP 1 Score: 177 bits (449), Expect = 9.370e-51
Identity = 95/178 (53.37%), Postives = 124/178 (69.66%), Query Frame = 0

Query:    1 MAVR-EGPWQSINDHDFILRSLRKGK--RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAA--------TGSGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 167
            MA+R E  + S N+  F+   LR+    R +GR L   R +R+ F R+E  S AE+QLGRTRV+    GE+VPPFPDR TEGFLHF+VELS MA+         G G  SS+ +AE+AR++E  VR+S+ALDTEAL ++ GEKVW I C +HV+DHGGNL+DA +LA +AAL H+RRP
Sbjct:    1 MALRDEHDFLSENERQFLANCLRQPPHIRANGRELLQQRKIRLQFRRSESASQAEVQLGRTRVIGNVYGEIVPPFPDRPTEGFLHFSVELSPMASPSFGASASAGRGAASSVAAAELARLVERSVRESRALDTEALDVVVGEKVWTITCHVHVVDHGGNLVDAASLAAIAALMHYRRP 178

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BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: K3X4Z2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4Z2_GLOUD)

HSP 1 Score: 178 bits (451), Expect = 1.530e-50
Identity = 94/171 (54.97%), Postives = 121/171 (70.76%), Query Frame = 0

Query:    1 MAVREG-PWQSINDHDFILRSLRKGK--RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATG-SGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 167
            MA+RE   + S N+  F+  S+      R DGR L   R +R+ F R E QS AE+QLGRTRV+A   GE+VPPFPDR TEGFLHFNVELS MA+      R S ++ E+AR+++ G+R+ +ALDTEAL II GEKVW I C+IHV+DHGGNL+D  +LA +AA+ H+RRP
Sbjct:    1 MAIREEHDFLSENERKFLFDSIHDAPHVRADGRELMHQRKIRVQFRRTEEQSQAEVQLGRTRVIANVHGEIVPPFPDRPTEGFLHFNVELSPMASQNFEVGRPSPMAVELARIVDRGIRECRALDTEALAIIAGEKVWAITCNIHVVDHGGNLIDCVSLAAIAAMMHYRRP 171

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BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: H3GYQ9_PHYRM (Kinesin motor domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GYQ9_PHYRM)

HSP 1 Score: 183 bits (465), Expect = 1.540e-50
Identity = 97/178 (54.49%), Postives = 125/178 (70.22%), Query Frame = 0

Query:    1 MAVR-EGPWQSINDHDFILRSLRKGK--RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAA--------TGSGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 167
            MA+R E  + S N+  F+   LR+    R DGR L   R +R+ F R+E +S AE+QLGRTRV+    GE+VPPFPDR TEGFLHF VELS MA+         G G  SS+ +AE+AR++E GVR+S+ALDTEAL ++ GEKVW I C +HV+DHGGNL+DA +LA +AAL H+RRP
Sbjct:    1 MALRDEHDFLSENERQFLANCLRQPPHVRADGRELLQQRKIRVQFRRSESESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHFAVELSPMASPNFEASASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAITCHVHVVDHGGNLVDAASLAAIAALMHYRRP 178

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BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: A0A7S1CIZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIZ9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.310e-50
Identity = 84/155 (54.19%), Postives = 114/155 (73.55%), Query Frame = 0

Query:   13 DHDFILRSLRKGKRVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATG-SGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRR 166
            + DFI  +LR G+RVDGR L D R +   F R   +++AE++LG+TRV+ V T EVVPP+PDR TEGFL FNVELS MA+      R S ++ EI R++E  +RD++A+DTEALCI+ GEKVW +RCD+ V+D GGN++DA  L+ +A+L HFRR
Sbjct:    7 ERDFIHHALRSGRRVDGRGLLDRRRVAFKFDRTAARTTAEVRLGKTRVVTVTTAEVVPPYPDRPTEGFLMFNVELSPMASEKFEAGRPSPLAVEIGRIVERCLRDARAIDTEALCIVAGEKVWSLRCDVRVVDDGGNIIDAAALSAVASLCHFRR 161

The following BLAST results are available for this feature:

BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot

BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G4N5_ECTSI	6.000e-97	84.52	3'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocar...	[more]
A0A6H5KDM4_9PHAE	1.450e-84	81.55	RNase_PH domain-containing protein n=1 Tax=Ectocar...	[more]
A0A835ZEC1_9STRA	7.910e-57	57.99	Ribosomal protein S5 domain 2-type protein n=1 Tax...	[more]
A0A3M6VKF7_9STRA	1.240e-52	53.93	Uncharacterized protein n=1 Tax=Peronospora effusa...	[more]
G4ZFL2_PHYSP	3.480e-52	54.49	Uncharacterized protein n=8 Tax=Phytophthora TaxID...	[more]
A0A3R7K5I2_9STRA	5.380e-51	51.89	Uncharacterized protein n=3 Tax=Phytophthora kerno...	[more]
M4BRP2_HYAAE	9.370e-51	53.37	RNase_PH domain-containing protein n=1 Tax=Hyalope...	[more]
K3X4Z2_GLOUD	1.530e-50	54.97	Uncharacterized protein n=1 Tax=Globisporangium ul...	[more]
H3GYQ9_PHYRM	1.540e-50	54.49	Kinesin motor domain-containing protein n=2 Tax=Ph...	[more]
A0A7S1CIZ9_9STRA	3.310e-50	54.19	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 42..167 e-value: 2.4E-18 score: 66.9
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 9..167 e-value: 9.8E-52 score: 178.0
None	No IPR available	PANTHER	PTHR11097:SF14	EXOSOME COMPLEX COMPONENT RRP45	coord: 10..167
None	No IPR available	PANTHER	PTHR11097	EXOSOME COMPLEX EXONUCLEASE RIBOSOMAL RNA PROCESSING PROTEIN	coord: 10..167
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 8..167

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-canaliculata_contig9362	contig	P-canaliculata_contig9362:8108..11349 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Pelvetia canaliculata dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-canaliculata_contig9362.23369.1	mRNA_P-canaliculata_contig9362.23369.1	Pelvetia canaliculata dioecious	mRNA	P-canaliculata_contig9362 8108..11349 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-canaliculata_contig9362.23369.1 ID=prot_P-canaliculata_contig9362.23369.1|Name=mRNA_P-canaliculata_contig9362.23369.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=167bp
MAVREGPWQSINDHDFILRSLRKGKRVDGRRLEDMRLLRMVFSRAEGQSS
AEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATGSGERSS
LVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLM
DACTLATMAALRHFRRP

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001247	ExoRNase_PH_dom1
IPR027408	PNPase/RNase_PH_dom_sf
IPR020568	Ribosomal_S5_D2-typ_fold