mRNA_P-canaliculata_contig9362.23369.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig9362.23369.1
Unique NamemRNA_P-canaliculata_contig9362.23369.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: D7G4N5_ECTSI (3'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4N5_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 6.000e-97
Identity = 142/168 (84.52%), Postives = 153/168 (91.07%), Query Frame = 1 
Query:    1 MAVREGPWQSINDHDFILRSLRKGKRVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATGSGE-RSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 501
            MA+REGPWQS NDHDFILRSLR G+R DGR+L DMRLLRMVF+RAEGQ+SAEIQLGRTRVL V TGEVVPPFPDR TEGFLHFNVEL  MAA   GE R+S +S EIARVIEIGVRDSQALDTEALCIIGGEKVWQ+RCD+H+LDHGGNL+DACTLATMAALRHFRRP
Sbjct:    1 MAIREGPWQSKNDHDFILRSLRGGRRADGRQLGDMRLLRMVFARAEGQASAEIQLGRTRVLGVVTGEVVPPFPDRPTEGFLHFNVELGPMAAASVGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEKVWQLRCDVHILDHGGNLIDACTLATMAALRHFRRP 168
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: A0A6H5KDM4_9PHAE (RNase_PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDM4_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 1.450e-84
Identity = 137/168 (81.55%), Postives = 149/168 (88.69%), Query Frame = 1 
Query:    1 MAVREGPWQSINDHDFILRSLRKGKRVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATGSGE-RSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 501
            MA+REGPWQS ND++FILRSLR G+RVDGR L DMRLLRMVF+RAEGQ+SAEIQLGRTRVL V TGEVVPPFPDR  EGFLHFNVEL  MAA   GE R+S +S EIARVIEIGVRDSQALDTEALCIIGGEK   +RCD+H+LDHGGNL+DACTLATMAALRHFRRP
Sbjct:    1 MAIREGPWQSKNDYEFILRSLRGGRRVDGRELGDMRLLRMVFARAEGQASAEIQLGRTRVLGVVTGEVVPPFPDRPMEGFLHFNVELGPMAAASMGEQRNSPLSVEIARVIEIGVRDSQALDTEALCIIGGEK---LRCDVHILDHGGNLIDACTLATMAALRHFRRP 165
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: A0A835ZEC1_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC1_9STRA)

HSP 1 Score: 194 bits (494), Expect = 7.910e-57
Identity = 98/169 (57.99%), Postives = 128/169 (75.74%), Query Frame = 1 
Query:    1 MAVREGPWQSINDHDFILRSLRKGK-RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATGSGE-RSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 501
            MA+R+G   +IN + F+L +LR GK R+DGR L  +R +   F+R+EGQ+S  +Q GRT+ LAV + EVVPP+PDR T+G L FNVELS MA    G  R+S ++ EI R+IE G+RDSQALDTE LCI+ GEKVWQ+R D+H+LD+GGNL+DA  LA +AAL+HFRRP
Sbjct:    1 MAIRDGFTHTINTNAFVLETLRGGKQRIDGRELNTLRQIAFQFTRSEGQASVLVQWGRTQTLAVVSAEVVPPYPDRPTDGALMFNVELSKMAEASVGLLRASPLATEITRIIERGIRDSQALDTETLCIVAGEKVWQLRVDVHILDNGGNLVDAAALAAIAALQHFRRP 169
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BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: A0A3M6VKF7_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKF7_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.240e-52
Identity = 96/178 (53.93%), Postives = 126/178 (70.79%), Query Frame = 1 
Query:    1 MAVREG-PWQSINDHDFILRSLRKGK--RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAA--------TGSGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 501
            MA+R+   + S N+  F+   LR+    R DGR L   R +R+ F R+E +S AE+QLGRTRV+    GE+VPPFPDR TEGFLHF+VELS MA+           G  SS+V+AE+AR++E GVR+S+ALDTEAL ++ GEKVW I C +HV+DHGGNL+DA +LA +AAL H+RRP
Sbjct:    1 MALRDDHDFLSENERQFLANCLRQSPHVRADGRELLQQRKIRVQFRRSESESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHFSVELSPMASPSFDASSSASRGAASSVVAAELARLVERGVRESRALDTEALAVVAGEKVWAITCHVHVVDHGGNLVDAASLAAIAALMHYRRP 178
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: G4ZFL2_PHYSP (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4ZFL2_PHYSP)

HSP 1 Score: 182 bits (463), Expect = 3.480e-52
Identity = 97/178 (54.49%), Postives = 125/178 (70.22%), Query Frame = 1 
Query:    1 MAVR-EGPWQSINDHDFILRSLRKGK--RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAA--------TGSGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 501
            MA+R E  + S N+  F+   LR+    R DGR L   R +R+ F R+E +S AE+QLGRTRV+    GE+VPPFPDR TEGFLHF VELS MA+         G G  SS+ +AE+AR++E GVR+S+ALDTEAL ++ GEKVW I C +HV+DHGGNL+DA +LA +AAL H+RRP
Sbjct:    1 MALRDEHDFLSENERQFLANCLRQPPHVRADGRELLQQRKIRVQFRRSETESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHFAVELSPMASPSFEAAASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAITCHVHVVDHGGNLVDAASLAAIAALMHYRRP 178
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: A0A3R7K5I2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K5I2_9STRA)

HSP 1 Score: 179 bits (455), Expect = 5.380e-51
Identity = 96/185 (51.89%), Postives = 124/185 (67.03%), Query Frame = 1 
Query:    1 MAVREGPWQSINDHDFILRSLRK----------GKRVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAA--------TGSGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 501
            MA+R+       DHDF+  S R+            R DGR L   R +R+ F R++ +S AE+QLGRTRV+    GE+VPPFPDR TEGFLHF VELS MA+         G G  SS+ +AE+AR++E GVR+S+ALDTEAL ++ GEKVW I C +HV+DHGGNL+DA +LA +AAL H+RRP
Sbjct:    1 MALRD-------DHDFLSESERQFLANCIRQPPHVRADGRELLQQRKIRVQFRRSDSESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHFAVELSPMASPSFEASASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAITCHVHVVDHGGNLVDAASLAAIAALMHYRRP 178
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: M4BRP2_HYAAE (RNase_PH domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRP2_HYAAE)

HSP 1 Score: 177 bits (449), Expect = 9.370e-51
Identity = 95/178 (53.37%), Postives = 124/178 (69.66%), Query Frame = 1 
Query:    1 MAVR-EGPWQSINDHDFILRSLRKGK--RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAA--------TGSGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 501
            MA+R E  + S N+  F+   LR+    R +GR L   R +R+ F R+E  S AE+QLGRTRV+    GE+VPPFPDR TEGFLHF+VELS MA+         G G  SS+ +AE+AR++E  VR+S+ALDTEAL ++ GEKVW I C +HV+DHGGNL+DA +LA +AAL H+RRP
Sbjct:    1 MALRDEHDFLSENERQFLANCLRQPPHIRANGRELLQQRKIRLQFRRSESASQAEVQLGRTRVIGNVYGEIVPPFPDRPTEGFLHFSVELSPMASPSFGASASAGRGAASSVAAAELARLVERSVRESRALDTEALDVVVGEKVWTITCHVHVVDHGGNLVDAASLAAIAALMHYRRP 178
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: K3X4Z2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X4Z2_GLOUD)

HSP 1 Score: 178 bits (451), Expect = 1.530e-50
Identity = 94/171 (54.97%), Postives = 121/171 (70.76%), Query Frame = 1 
Query:    1 MAVREG-PWQSINDHDFILRSLRKGK--RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATG-SGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 501
            MA+RE   + S N+  F+  S+      R DGR L   R +R+ F R E QS AE+QLGRTRV+A   GE+VPPFPDR TEGFLHFNVELS MA+      R S ++ E+AR+++ G+R+ +ALDTEAL II GEKVW I C+IHV+DHGGNL+D  +LA +AA+ H+RRP
Sbjct:    1 MAIREEHDFLSENERKFLFDSIHDAPHVRADGRELMHQRKIRVQFRRTEEQSQAEVQLGRTRVIANVHGEIVPPFPDRPTEGFLHFNVELSPMASQNFEVGRPSPMAVELARIVDRGIRECRALDTEALAIIAGEKVWAITCNIHVVDHGGNLIDCVSLAAIAAMMHYRRP 171
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: H3GYQ9_PHYRM (Kinesin motor domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=H3GYQ9_PHYRM)

HSP 1 Score: 183 bits (465), Expect = 1.540e-50
Identity = 97/178 (54.49%), Postives = 125/178 (70.22%), Query Frame = 1 
Query:    1 MAVR-EGPWQSINDHDFILRSLRKGK--RVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAA--------TGSGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRRP 501
            MA+R E  + S N+  F+   LR+    R DGR L   R +R+ F R+E +S AE+QLGRTRV+    GE+VPPFPDR TEGFLHF VELS MA+         G G  SS+ +AE+AR++E GVR+S+ALDTEAL ++ GEKVW I C +HV+DHGGNL+DA +LA +AAL H+RRP
Sbjct:    1 MALRDEHDFLSENERQFLANCLRQPPHVRADGRELLQQRKIRVQFRRSESESQAEVQLGRTRVIGNVHGEIVPPFPDRPTEGFLHFAVELSPMASPNFEASASAGRGAASSVAAAELARLVERGVRESRALDTEALAVVAGEKVWAITCHVHVVDHGGNLVDAASLAAIAALMHYRRP 178
[Close]
BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Match: A0A7S1CIZ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CIZ9_9STRA)

HSP 1 Score: 170 bits (431), Expect = 3.310e-50
Identity = 84/155 (54.19%), Postives = 114/155 (73.55%), Query Frame = 1 
Query:   37 DHDFILRSLRKGKRVDGRRLEDMRLLRMVFSRAEGQSSAEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATG-SGERSSLVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLMDACTLATMAALRHFRR 498
            + DFI  +LR G+RVDGR L D R +   F R   +++AE++LG+TRV+ V T EVVPP+PDR TEGFL FNVELS MA+      R S ++ EI R++E  +RD++A+DTEALCI+ GEKVW +RCD+ V+D GGN++DA  L+ +A+L HFRR
Sbjct:    7 ERDFIHHALRSGRRVDGRGLLDRRRVAFKFDRTAARTTAEVRLGKTRVVTVTTAEVVPPYPDRPTEGFLMFNVELSPMASEKFEAGRPSPLAVEIGRIVERCLRDARAIDTEALCIVAGEKVWSLRCDVRVVDDGGNIIDAAALSAVASLCHFRR 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig9362.23369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4N5_ECTSI6.000e-9784.523'-5'-exoribonuclease/ RNA binding n=1 Tax=Ectocar... [more]
A0A6H5KDM4_9PHAE1.450e-8481.55RNase_PH domain-containing protein n=1 Tax=Ectocar... [more]
A0A835ZEC1_9STRA7.910e-5757.99Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
A0A3M6VKF7_9STRA1.240e-5253.93Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
G4ZFL2_PHYSP3.480e-5254.49Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
A0A3R7K5I2_9STRA5.380e-5151.89Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
M4BRP2_HYAAE9.370e-5153.37RNase_PH domain-containing protein n=1 Tax=Hyalope... [more]
K3X4Z2_GLOUD1.530e-5054.97Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
H3GYQ9_PHYRM1.540e-5054.49Kinesin motor domain-containing protein n=2 Tax=Ph... [more]
A0A7S1CIZ9_9STRA3.310e-5054.19Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig9362contigP-canaliculata_contig9362:8108..11349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.1
Seed ortholog evalue2.6e-75
Seed eggNOG ortholog2880.D7G4N5
KEGG koko:K03678,ko:K10397,ko:K12589
KEGG Pathwayko03018,map03018
KEGG ModuleM00390,M00391
GOsGO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016075,GO:0016078,GO:0016180,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0017091,GO:0019222,GO:0019439,GO:0022613,GO:0031123,GO:0031125,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034470,GO:0034472,GO:0034473,GO:0034475,GO:0034476,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071035,GO:0071038,GO:0071042,GO:0071046,GO:0071047,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1905354
EggNOG free text desc.U1 snRNA 3'-end processing
EggNOG OGsCOG2123@1,KOG1614@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04812
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRrp45 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-17_001830.1
Exons4
Model size501
Cds size501
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig9362.23369.1prot_P-canaliculata_contig9362.23369.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig9362 8108..11349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817304.3858893-CDS-P-canaliculata_contig9362:8107..83081622817304.3858893-CDS-P-canaliculata_contig9362:8107..8308Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 8108..8308 +
1693495211.3710139-CDS-P-canaliculata_contig9362:8107..83081693495211.3710139-CDS-P-canaliculata_contig9362:8107..8308Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 8108..8308 +
1622817304.4020245-CDS-P-canaliculata_contig9362:9848..99381622817304.4020245-CDS-P-canaliculata_contig9362:9848..9938Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 9849..9938 +
1693495211.3889327-CDS-P-canaliculata_contig9362:9848..99381693495211.3889327-CDS-P-canaliculata_contig9362:9848..9938Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 9849..9938 +
1622817304.4152548-CDS-P-canaliculata_contig9362:10738..108431622817304.4152548-CDS-P-canaliculata_contig9362:10738..10843Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 10739..10843 +
1693495211.3996792-CDS-P-canaliculata_contig9362:10738..108431693495211.3996792-CDS-P-canaliculata_contig9362:10738..10843Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 10739..10843 +
1622817304.4290812-CDS-P-canaliculata_contig9362:11244..113491622817304.4290812-CDS-P-canaliculata_contig9362:11244..11349Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 11245..11349 +
1693495211.409501-CDS-P-canaliculata_contig9362:11244..113491693495211.409501-CDS-P-canaliculata_contig9362:11244..11349Pelvetia canaliculata dioeciousCDSP-canaliculata_contig9362 11245..11349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig9362.23369.1

>prot_P-canaliculata_contig9362.23369.1 ID=prot_P-canaliculata_contig9362.23369.1|Name=mRNA_P-canaliculata_contig9362.23369.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=167bp
MAVREGPWQSINDHDFILRSLRKGKRVDGRRLEDMRLLRMVFSRAEGQSS
AEIQLGRTRVLAVATGEVVPPFPDRATEGFLHFNVELSSMAATGSGERSS
LVSAEIARVIEIGVRDSQALDTEALCIIGGEKVWQIRCDIHVLDHGGNLM
DACTLATMAALRHFRRP
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mRNA from alignment at P-canaliculata_contig9362:8108..11349+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig9362.23369.1 ID=mRNA_P-canaliculata_contig9362.23369.1|Name=mRNA_P-canaliculata_contig9362.23369.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=3242bp|location=Sequence derived from alignment at P-canaliculata_contig9362:8108..11349+ (Pelvetia canaliculata dioecious)
ATGGCTGTCCGAGAGGGTCCGTGGCAGAGCATAAACGATCACGACTTTAT
CCTCCGGTCCCTACGAAAAGGGAAGCGCGTTGATGGGAGGCGACTGGAGG
ACATGAGACTGCTGCGAATGGTTTTCTCGCGCGCCGAGGGGCAGTCAAGC
GCGGAGATCCAGCTGGGACGAACTCGTGTGCTGGCTGTAGCAACGGGTGA
GGTTAGTACGATCGCCAGTCAAACACTCGAGAAGGGAAGCATTGTAACCG
GTGGTTGTTATTCTCATGGACCCCGGCGGTGGAAGGGCAGACCATGCTGT
CGGAGTGCGATGTGCAGGTCGGAAGGTGTGACTACCATGCTGCCCCTTTA
GTAGCGCATGATTGATCCACTGCTGGCAAGAAGTATACTGTTTTGTATAT
ACTTTAAAAAGCGTACTTGTACTCCTGCTGTGCCAGGTACAGGCATGCAG
TACACGTACCTTGTACTTTACTTCGTATAGTTTTGATTCAAACACTGGTT
ACAGCCAGGTACTTTCGAGCTGGACGCAGATCGTATACTGTAGACAAAGA
ACACCAACCCGCGGCATCAAACCGATCGTCCCATCGAGTGCCCTAAACGC
CCGACCAACTTGTGGAACTTCCCGCTAGTTGGCGTGGCAGCAGGTACAGT
CAAGCGTTTGCGTACTAAATGCCTTGAAAAGCAGTACAGTACAGAGGACG
AGTGCAGCAGTGTCCTTCATTCTTCCTTTCCTCTCCAATCCCATGTGACG
GCGTGGAAAAAAGGTCCTTGCATCGATCGAAAAGTATTTGCATTTATATG
TGGAGGACGCCGCCGCGGAAAGCGGGACGAATTCGACGAGTAAGCATCGG
ATTCAGCCTGAGTGTGGAGAATGAGCAGGCTGACGCGGGACGGGACGGCC
GAACCTGTCTCGCGAGACCAAATTCTCAGGCGCAACCTGGGACATGGAAG
TATTCATTTTGCCCTCTTCAGCTGACCACGAGCAGGATTAGCAACCTTAG
CCGGTCGATCCATACTTTGCTATATACTGTATAAGTTATGGCTATACATA
CACACATGACTTGGAGGGAGAATTAGCTTTCGCAGTCCGCTGCAACAATA
AAAAAAGCTTGTGTCTAATGGATACGGTCAGTAGTCTTCGTACATCTTCG
TTGAGACCACAAGCGGGATTGGCATTTGGTGGGTTGGTTAGGCCGCCTGC
CTTCTTTTTCCTGCCGAAGTCTTCAGTTGCAAAGACAACACGCCGAAAGT
GCGATCAATTAATCCATCACTTATAGCCGATGAGTCTCAACGTTGCCATC
CTGCCCGTGGTCGCTAAGGATCTTCCCATCTCTCCCCGTTTCACGCCTTA
CGAATGTTTATCGCGATATGCAAGTTCAGCACTCTCACGACTCGTCAACC
AACGGTTGAATTTTTACCTACTCATGTACTCACGCTTTCCGCTACGGACG
CCAGGATAAAAATACTGCTTTGACAAGAATCGAACTCACGGCTTCCTCAT
TATATAGCAAGTTGCAGGTTTACCTACCATACAACTCGGGTGACGACTCT
GTACTTATTAATAGCAACATTCACCCATCAAATCTCGAAACTCCGACATG
GTTACGCGGTGGTTGCTAATATCCACCCGCCGCCGCCTCCCCATCTTCCA
TCACGCAACACTCCTTAACTCCCGTCTCTTTCTCTGCGCTGTGCCCGCAT
GCGTTGCCTTACGCGACGCCGAATACCCTCGTGATGTCAAGGTGGTGCCT
CCATTTCCCGACCGTGCGACCGAAGGATTTCTGCACTTCAACGTCGAGCT
GAGCTCGATGGCGGCGACTGGCTCCGGGGAGGTGCGCGGCTCTTGTCAAA
TCATTTATCTTTCTCTCTTTCAAGACGAGAGTGTCAGGAGGGGGAACCAA
TTTGTAGGCAACCAAAAAAGCAAACGTGAACCATATCTCCTAAAATTTGT
AGTCCGGGTCCCGCGGGGTGTTTTCTGTGTAGCAGGCTGCACTACGACTC
TCTTCCCTCGTCCGGTTTTTCTACATACAGTAGTACAGCCCATGTATCGA
TAAGGCCAAGTGCCTTCGCCGAGACCGAGCTGGAAACTGAATAGTTTCGT
ACGGTTCGTCGTTTTACCGTGGCATCTTCCGAGTGGAACACCTTGCTGAC
AACTGCGGTCGTTTCGGTGTTGAATGGCTGCCAATCGCCACCATTGCTGA
CCACCTCCGTTCGCGTGTTGGCGTACAAAACCACCAACAGCAGTAGTAGT
AGCTAACCGAACGACCTACGTTATCCACTGATACTCTCTCATTTTCGGTC
GTTCTGTGTTCGTTTTCCCTACACGGTAACCGCTACTGTAGCGATCATCG
TAGTTTGGTTTTGTGCTCTTCGCTAACTTACAGTTATTCTGTGTTCGGTG
TCCTCACATGGTAATAGCTAATACGAGGCACTTGCTAATCATCGTAGCGG
TGGTTTTGTGCTCTTAGCAATGCACCCACTTGAAACCTTACGATACGTTC
GTGAGGTTTTTGTGGCTGCAGAGCTTCACAAAAAGAGAAAACAATCGTAG
AGTAAACAAAGAGGCGTTTTGACTCCGCTGATAACCTCGACTTCATCGAA
CGACTGTCTTTTCCGTCGGCTTGCGCTGCAGCGGAGCTCCCTTGTCTCGG
CCGAGATAGCCCGGGTCATCGAGATAGGCGTGAGGGATTCCCAAGCCCTC
GACACCGAGGCTCTTTGTATCATAGGAGGCGAGAAGGTGCGCTGATCCCC
GCATCGCCAAACTCGCCGCCTGCGAGATCACTACGAAACCCGTGAAACCG
TCGCTTGACACCCTCGCTTTCGTGGTGAGAAAACGCACGGACGAGGGCGA
TAAAGGGAAAAGAGGAAGGGGAAGTTGGAGGAGAGCACGGGAGAGAGCAC
CGGGGGGCAGTCATTATATTTGGAGAGAACGGGGGTCTTGCGGTACAGTG
TTATGGCGCACTCTTGTGTCGATCGTTTGCTGCCGCGTCCTGATTGGCGC
ACACACCCACGGAAGGGAGGGGAGTATAGCGTCCAGTGATAAAAACGGGA
CCTGATCGTCTCATGGTTGTTTTCACAGGTGTCTAACATGCTTACACTTT
TACTCGCATTTTTGTGTTAATTCTCCACCGACGGCAGGTATGGCAGATAC
GCTGCGATATTCACGTCCTCGACCACGGCGGCAACTTGATGGATGCATGC
ACATTGGCGACCATGGCGGCGCTGCGGCATTTTCGTCGGCCC
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Coding sequence (CDS) from alignment at P-canaliculata_contig9362:8108..11349+

>mRNA_P-canaliculata_contig9362.23369.1 ID=mRNA_P-canaliculata_contig9362.23369.1|Name=mRNA_P-canaliculata_contig9362.23369.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at P-canaliculata_contig9362:8108..11349+ (Pelvetia canaliculata dioecious)
ATGGCTGTCCGAGAGGGTCCGTGGCAGAGCATAAACGATCACGACTTTAT
CCTCCGGTCCCTACGAAAAGGGAAGCGCGTTGATGGGAGGCGACTGGAGG
ACATGAGACTGCTGCGAATGGTTTTCTCGCGCGCCGAGGGGCAGTCAAGC
GCGGAGATCCAGCTGGGACGAACTCGTGTGCTGGCTGTAGCAACGGGTGA
GATGGCTGTCCGAGAGGGTCCGTGGCAGAGCATAAACGATCACGACTTTA
TCCTCCGGTCCCTACGAAAAGGGAAGCGCGTTGATGGGAGGCGACTGGAG
GACATGAGACTGCTGCGAATGGTTTTCTCGCGCGCCGAGGGGCAGTCAAG
CGCGGAGATCCAGCTGGGACGAACTCGTGTGCTGGCTGTAGCAACGGGTG
AGGTGGTGCCTCCATTTCCCGACCGTGCGACCGAAGGATTTCTGCACTTC
AACGTCGAGCTGAGCTCGATGGCGGCGACTGGCTCCGGGGAGGTGGTGCC
TCCATTTCCCGACCGTGCGACCGAAGGATTTCTGCACTTCAACGTCGAGC
TGAGCTCGATGGCGGCGACTGGCTCCGGGGAGCGGAGCTCCCTTGTCTCG
GCCGAGATAGCCCGGGTCATCGAGATAGGCGTGAGGGATTCCCAAGCCCT
CGACACCGAGGCTCTTTGTATCATAGGAGGCGAGAAGCGGAGCTCCCTTG
TCTCGGCCGAGATAGCCCGGGTCATCGAGATAGGCGTGAGGGATTCCCAA
GCCCTCGACACCGAGGCTCTTTGTATCATAGGAGGCGAGAAGGTATGGCA
GATACGCTGCGATATTCACGTCCTCGACCACGGCGGCAACTTGATGGATG
CATGCACATTGGCGACCATGGCGGCGCTGCGGCATTTTCGTCGGCCCGTA
TGGCAGATACGCTGCGATATTCACGTCCTCGACCACGGCGGCAACTTGAT
GGATGCATGCACATTGGCGACCATGGCGGCGCTGCGGCATTTTCGTCGGC
CC
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