prot_P-canaliculata_contig93176.23328.1 (polypeptide) Pelvetia canaliculata dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-canaliculata_contig93176.23328.1
Unique Nameprot_P-canaliculata_contig93176.23328.1
Typepolypeptide
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Sequence length122
Homology
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A0A7W3ZZL3_9GAMM (Winged helix-turn-helix domain-containing protein n=1 Tax=Psychromonas sp. SR45-3 TaxID=2760930 RepID=A0A7W3ZZL3_9GAMM)

HSP 1 Score: 229 bits (585), Expect = 6.790e-74
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 0
Query:    5 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQGDV 122
            MLEKSL+VGEFHIDTSQNSLIHG+RKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGL VSESTV PMAQGD+
Sbjct:    1 MLEKSLIVGEFHIDTSQNSLIHGSRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLAVSESTVSPMAQGDL 118          
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A0A366W9K1_9GAMM (Transcriptional regulator n=6 Tax=unclassified Psychromonas TaxID=2614957 RepID=A0A366W9K1_9GAMM)

HSP 1 Score: 226 bits (576), Expect = 1.530e-72
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 0
Query:    5 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQGD 121
            MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVS++ V P+AQG+
Sbjct:    1 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSDNAVSPIAQGE 117          
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: UPI00041CAAEB (winged helix-turn-helix domain-containing protein n=2 Tax=Psychromonas TaxID=67572 RepID=UPI00041CAAEB)

HSP 1 Score: 218 bits (556), Expect = 1.700e-69
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 0
Query:    5 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQGDV 122
            MLEKSLVVGE+HIDTSQNSLIHG+RKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKS+GTLSLHGLNISTIPKRGYIARMEG+ +SE+ V PM Q +V
Sbjct:    1 MLEKSLVVGEYHIDTSQNSLIHGSRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGTLSLHGLNISTIPKRGYIARMEGVGISENQVSPMVQSEV 118          
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A0A2N0WWB5_9GAMM (Transcriptional regulator n=3 Tax=Psychromonas TaxID=67572 RepID=A0A2N0WWB5_9GAMM)

HSP 1 Score: 218 bits (555), Expect = 2.410e-69
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 0
Query:    5 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQGD 121
            MLEKSLVVGE+HIDTSQNSLIHG+RKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKS+GTLSLHGLNISTIPKRGYIARMEG+ VSE+ V P+AQ +
Sbjct:    1 MLEKSLVVGEYHIDTSQNSLIHGSRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGTLSLHGLNISTIPKRGYIARMEGVGVSENNVAPIAQSE 117          
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: M4U8G5_9GAMM (Cholera toxin transcriptional activator-like protein n=3 Tax=unclassified Psychromonas TaxID=2614957 RepID=M4U8G5_9GAMM)

HSP 1 Score: 216 bits (551), Expect = 8.120e-69
Identity = 104/115 (90.43%), Postives = 111/115 (96.52%), Query Frame = 0
Query:    5 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQ 119
            MLEKSLVVGE+HIDTSQNSLIHG+RKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKS+GTLSLHGLNISTIPKRGYIARMEG+ +SE+ + PM Q
Sbjct:    1 MLEKSLVVGEYHIDTSQNSLIHGSRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGTLSLHGLNISTIPKRGYIARMEGVGISENNIAPMTQ 115          
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: UPI001EE83635 (winged helix-turn-helix domain-containing protein n=1 Tax=Psychromonas antarctica TaxID=67573 RepID=UPI001EE83635)

HSP 1 Score: 209 bits (533), Expect = 5.380e-66
Identity = 103/118 (87.29%), Postives = 112/118 (94.92%), Query Frame = 0
Query:    5 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVS-ESTVLPMAQGD 121
            MLEKSLVVGE+HIDTSQNSLIHG+RKVYLGPLRTSLLHFLCKNVN VVTR+DLAQHVWGRLVTDHTINQHISQLRKS+GTLSLHGLNISTIPKRGYIARMEG+ +S ++ V P AQG+
Sbjct:    1 MLEKSLVVGEYHIDTSQNSLIHGSRKVYLGPLRTSLLHFLCKNVNKVVTRDDLAQHVWGRLVTDHTINQHISQLRKSIGTLSLHGLNISTIPKRGYIARMEGVGISADNQVSPFAQGE 118          
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A1SYN7_PSYIN (Cholera toxin transcriptional activator-like protein n=4 Tax=Psychromonas TaxID=67572 RepID=A1SYN7_PSYIN)

HSP 1 Score: 206 bits (524), Expect = 1.400e-64
Identity = 102/121 (84.30%), Postives = 110/121 (90.91%), Query Frame = 0
Query:    1 MGTIMLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQGD 121
            M   MLEK+LVVGEF IDTSQNSLIH NRKVYLGPLRTSLLHFLCKNVN VVTREDLAQHVWGRLVTDHTINQHISQLRKS+GTL LHGLNISTIPKRGYIARM+G+ +SE+ V PMA+ +
Sbjct:    1 MSIPMLEKNLVVGEFLIDTSQNSLIHTNRKVYLGPLRTSLLHFLCKNVNKVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGTLVLHGLNISTIPKRGYIARMDGIGLSENQVAPMARAE 121          
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: UPI001E62439C (winged helix-turn-helix domain-containing protein n=3 Tax=Motilimonas TaxID=1914248 RepID=UPI001E62439C)

HSP 1 Score: 201 bits (512), Expect = 7.040e-63
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 0
Query:    5 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVL 115
            MLEKSLVVGE+HIDTSQNSLIH NRKVYLGPLRTSLLHFLCKN+NTVVTREDLAQHVWGRLVTDHTINQHISQLRKS+G LS+HGLNISTIPKRGYIAR+EG  V + + L
Sbjct:    1 MLEKSLVVGEYHIDTSQNSLIHSNRKVYLGPLRTSLLHFLCKNLNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGNLSIHGLNISTIPKRGYIARLEGAEVGQPSPL 111          
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A0A418Y9W6_9GAMM (Response regulator n=2 Tax=Motilimonas pumila TaxID=2303987 RepID=A0A418Y9W6_9GAMM)

HSP 1 Score: 200 bits (508), Expect = 2.840e-62
Identity = 95/111 (85.59%), Postives = 104/111 (93.69%), Query Frame = 0
Query:    5 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVL 115
            MLEKSL+VGE+HIDTSQNSLIH NRKVYLGPLRTSLLHFLCKN+N+VVTREDLAQHVWGRLVTDHTINQHISQLRKS+G +S+HGLNISTIPKRGYIAR+EG  VS+   L
Sbjct:    1 MLEKSLIVGEYHIDTSQNSLIHNNRKVYLGPLRTSLLHFLCKNLNSVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGNMSIHGLNISTIPKRGYIARLEGAEVSQPAPL 111          
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A0A420EJN3_9ALTE (Response regulator n=1 Tax=Alginatibacterium sediminis TaxID=2164068 RepID=A0A420EJN3_9ALTE)

HSP 1 Score: 132 bits (331), Expect = 1.230e-35
Identity = 64/104 (61.54%), Postives = 75/104 (72.12%), Query Frame = 0
Query:   12 VGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVL 115
            VG F +D  QNSLIH     YLGPLR SLL +LCK++N VV R+DLA  VWGR V+DHTINQHISQLRKS+  LS   L ISTIPK+GYIAR E   ++ S  +
Sbjct:    9 VGPFAVDLGQNSLIHNGESTYLGPLRASLLAYLCKHINKVVARDDLADSVWGRSVSDHTINQHISQLRKSLQQLSREDLTISTIPKKGYIARCESAAIAASEAM 112          
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W3ZZL3_9GAMM6.790e-7495.76Winged helix-turn-helix domain-containing protein ... [more]
A0A366W9K1_9GAMM1.530e-7294.87Transcriptional regulator n=6 Tax=unclassified Psy... [more]
UPI00041CAAEB1.700e-6989.83winged helix-turn-helix domain-containing protein ... [more]
A0A2N0WWB5_9GAMM2.410e-6990.60Transcriptional regulator n=3 Tax=Psychromonas Tax... [more]
M4U8G5_9GAMM8.120e-6990.43Cholera toxin transcriptional activator-like prote... [more]
UPI001EE836355.380e-6687.29winged helix-turn-helix domain-containing protein ... [more]
A1SYN7_PSYIN1.400e-6484.30Cholera toxin transcriptional activator-like prote... [more]
UPI001E62439C7.040e-6387.39winged helix-turn-helix domain-containing protein ... [more]
A0A418Y9W6_9GAMM2.840e-6285.59Response regulator n=2 Tax=Motilimonas pumila TaxI... [more]
A0A420EJN3_9ALTE1.230e-3561.54Response regulator n=1 Tax=Alginatibacterium sedim... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001867OmpR/PhoB-type DNA-binding domainSMARTSM00862Trans_reg_C_3coord: 28..102
e-value: 2.3E-12
score: 57.1
IPR001867OmpR/PhoB-type DNA-binding domainPFAMPF00486Trans_reg_Ccoord: 29..101
e-value: 4.7E-15
score: 55.4
IPR001867OmpR/PhoB-type DNA-binding domainPROSITEPS51755OMPR_PHOBcoord: 7..104
score: 23.046
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 5..113
e-value: 3.7E-23
score: 83.2
IPR016032Signal transduction response regulator, C-terminal effectorSUPERFAMILY46894C-terminal effector domain of the bipartite response regulatorscoord: 10..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig93176contigP-canaliculata_contig93176:805..1170 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig93176.23328.1mRNA_P-canaliculata_contig93176.23328.1Pelvetia canaliculata dioeciousmRNAP-canaliculata_contig93176 805..1170 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-canaliculata_contig93176.23328.1 ID=prot_P-canaliculata_contig93176.23328.1|Name=mRNA_P-canaliculata_contig93176.23328.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=122bp
MGTIMLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNT
VVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGY
IARMEGLTVSESTVLPMAQGDV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001867OmpR/PhoB-type_DNA-bd
IPR036388WH-like_DNA-bd_sf
IPR016032Sig_transdc_resp-reg_C-effctor