mRNA_P-canaliculata_contig93176.23328.1 (mRNA) Pelvetia canaliculata dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-canaliculata_contig93176.23328.1
Unique NamemRNA_P-canaliculata_contig93176.23328.1
TypemRNA
OrganismPelvetia canaliculata dioecious (Pelvetia canaliculata dioecious (Channelled wrack))
Homology
[Close]
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A0A7W3ZZL3_9GAMM (Winged helix-turn-helix domain-containing protein n=1 Tax=Psychromonas sp. SR45-3 TaxID=2760930 RepID=A0A7W3ZZL3_9GAMM)

HSP 1 Score: 229 bits (585), Expect = 6.790e-74
Identity = 113/118 (95.76%), Postives = 116/118 (98.31%), Query Frame = 1 
Query:   13 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQGDV 366
            MLEKSL+VGEFHIDTSQNSLIHG+RKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGL VSESTV PMAQGD+
Sbjct:    1 MLEKSLIVGEFHIDTSQNSLIHGSRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLAVSESTVSPMAQGDL 118
[Close]
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A0A366W9K1_9GAMM (Transcriptional regulator n=6 Tax=unclassified Psychromonas TaxID=2614957 RepID=A0A366W9K1_9GAMM)

HSP 1 Score: 226 bits (576), Expect = 1.530e-72
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 1 
Query:   13 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQGD 363
            MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVS++ V P+AQG+
Sbjct:    1 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSDNAVSPIAQGE 117
[Close]
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: UPI00041CAAEB (winged helix-turn-helix domain-containing protein n=2 Tax=Psychromonas TaxID=67572 RepID=UPI00041CAAEB)

HSP 1 Score: 218 bits (556), Expect = 1.700e-69
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 1 
Query:   13 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQGDV 366
            MLEKSLVVGE+HIDTSQNSLIHG+RKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKS+GTLSLHGLNISTIPKRGYIARMEG+ +SE+ V PM Q +V
Sbjct:    1 MLEKSLVVGEYHIDTSQNSLIHGSRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGTLSLHGLNISTIPKRGYIARMEGVGISENQVSPMVQSEV 118
[Close]
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A0A2N0WWB5_9GAMM (Transcriptional regulator n=3 Tax=Psychromonas TaxID=67572 RepID=A0A2N0WWB5_9GAMM)

HSP 1 Score: 218 bits (555), Expect = 2.410e-69
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = 1 
Query:   13 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQGD 363
            MLEKSLVVGE+HIDTSQNSLIHG+RKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKS+GTLSLHGLNISTIPKRGYIARMEG+ VSE+ V P+AQ +
Sbjct:    1 MLEKSLVVGEYHIDTSQNSLIHGSRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGTLSLHGLNISTIPKRGYIARMEGVGVSENNVAPIAQSE 117
[Close]
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: M4U8G5_9GAMM (Cholera toxin transcriptional activator-like protein n=3 Tax=unclassified Psychromonas TaxID=2614957 RepID=M4U8G5_9GAMM)

HSP 1 Score: 216 bits (551), Expect = 8.120e-69
Identity = 104/115 (90.43%), Postives = 111/115 (96.52%), Query Frame = 1 
Query:   13 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQ 357
            MLEKSLVVGE+HIDTSQNSLIHG+RKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKS+GTLSLHGLNISTIPKRGYIARMEG+ +SE+ + PM Q
Sbjct:    1 MLEKSLVVGEYHIDTSQNSLIHGSRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGTLSLHGLNISTIPKRGYIARMEGVGISENNIAPMTQ 115
[Close]
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: UPI001EE83635 (winged helix-turn-helix domain-containing protein n=1 Tax=Psychromonas antarctica TaxID=67573 RepID=UPI001EE83635)

HSP 1 Score: 209 bits (533), Expect = 5.380e-66
Identity = 103/118 (87.29%), Postives = 112/118 (94.92%), Query Frame = 1 
Query:   13 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVS-ESTVLPMAQGD 363
            MLEKSLVVGE+HIDTSQNSLIHG+RKVYLGPLRTSLLHFLCKNVN VVTR+DLAQHVWGRLVTDHTINQHISQLRKS+GTLSLHGLNISTIPKRGYIARMEG+ +S ++ V P AQG+
Sbjct:    1 MLEKSLVVGEYHIDTSQNSLIHGSRKVYLGPLRTSLLHFLCKNVNKVVTRDDLAQHVWGRLVTDHTINQHISQLRKSIGTLSLHGLNISTIPKRGYIARMEGVGISADNQVSPFAQGE 118
[Close]
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A1SYN7_PSYIN (Cholera toxin transcriptional activator-like protein n=4 Tax=Psychromonas TaxID=67572 RepID=A1SYN7_PSYIN)

HSP 1 Score: 206 bits (524), Expect = 1.400e-64
Identity = 102/121 (84.30%), Postives = 110/121 (90.91%), Query Frame = 1 
Query:    1 MGTIMLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVLPMAQGD 363
            M   MLEK+LVVGEF IDTSQNSLIH NRKVYLGPLRTSLLHFLCKNVN VVTREDLAQHVWGRLVTDHTINQHISQLRKS+GTL LHGLNISTIPKRGYIARM+G+ +SE+ V PMA+ +
Sbjct:    1 MSIPMLEKNLVVGEFLIDTSQNSLIHTNRKVYLGPLRTSLLHFLCKNVNKVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGTLVLHGLNISTIPKRGYIARMDGIGLSENQVAPMARAE 121
[Close]
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: UPI001E62439C (winged helix-turn-helix domain-containing protein n=3 Tax=Motilimonas TaxID=1914248 RepID=UPI001E62439C)

HSP 1 Score: 201 bits (512), Expect = 7.040e-63
Identity = 97/111 (87.39%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:   13 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVL 345
            MLEKSLVVGE+HIDTSQNSLIH NRKVYLGPLRTSLLHFLCKN+NTVVTREDLAQHVWGRLVTDHTINQHISQLRKS+G LS+HGLNISTIPKRGYIAR+EG  V + + L
Sbjct:    1 MLEKSLVVGEYHIDTSQNSLIHSNRKVYLGPLRTSLLHFLCKNLNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGNLSIHGLNISTIPKRGYIARLEGAEVGQPSPL 111
[Close]
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A0A418Y9W6_9GAMM (Response regulator n=2 Tax=Motilimonas pumila TaxID=2303987 RepID=A0A418Y9W6_9GAMM)

HSP 1 Score: 200 bits (508), Expect = 2.840e-62
Identity = 95/111 (85.59%), Postives = 104/111 (93.69%), Query Frame = 1 
Query:   13 MLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVL 345
            MLEKSL+VGE+HIDTSQNSLIH NRKVYLGPLRTSLLHFLCKN+N+VVTREDLAQHVWGRLVTDHTINQHISQLRKS+G +S+HGLNISTIPKRGYIAR+EG  VS+   L
Sbjct:    1 MLEKSLIVGEYHIDTSQNSLIHNNRKVYLGPLRTSLLHFLCKNLNSVVTREDLAQHVWGRLVTDHTINQHISQLRKSIGNMSIHGLNISTIPKRGYIARLEGAEVSQPAPL 111
[Close]
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Match: A0A420EJN3_9ALTE (Response regulator n=1 Tax=Alginatibacterium sediminis TaxID=2164068 RepID=A0A420EJN3_9ALTE)

HSP 1 Score: 132 bits (331), Expect = 1.230e-35
Identity = 64/104 (61.54%), Postives = 75/104 (72.12%), Query Frame = 1 
Query:   34 VGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNTVVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGYIARMEGLTVSESTVL 345
            VG F +D  QNSLIH     YLGPLR SLL +LCK++N VV R+DLA  VWGR V+DHTINQHISQLRKS+  LS   L ISTIPK+GYIAR E   ++ S  +
Sbjct:    9 VGPFAVDLGQNSLIHNGESTYLGPLRASLLAYLCKHINKVVARDDLADSVWGRSVSDHTINQHISQLRKSLQQLSREDLTISTIPKKGYIARCESAAIAASEAM 112
The following BLAST results are available for this feature:
BLAST of mRNA_P-canaliculata_contig93176.23328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7W3ZZL3_9GAMM6.790e-7495.76Winged helix-turn-helix domain-containing protein ... [more]
A0A366W9K1_9GAMM1.530e-7294.87Transcriptional regulator n=6 Tax=unclassified Psy... [more]
UPI00041CAAEB1.700e-6989.83winged helix-turn-helix domain-containing protein ... [more]
A0A2N0WWB5_9GAMM2.410e-6990.60Transcriptional regulator n=3 Tax=Psychromonas Tax... [more]
M4U8G5_9GAMM8.120e-6990.43Cholera toxin transcriptional activator-like prote... [more]
UPI001EE836355.380e-6687.29winged helix-turn-helix domain-containing protein ... [more]
A1SYN7_PSYIN1.400e-6484.30Cholera toxin transcriptional activator-like prote... [more]
UPI001E62439C7.040e-6387.39winged helix-turn-helix domain-containing protein ... [more]
A0A418Y9W6_9GAMM2.840e-6285.59Response regulator n=2 Tax=Motilimonas pumila TaxI... [more]
A0A420EJN3_9ALTE1.230e-3561.54Response regulator n=1 Tax=Alginatibacterium sedim... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-canaliculata_contig93176contigP-canaliculata_contig93176:805..1170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Pelvetia canaliculata dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score226.5
Seed ortholog evalue6.8e-57
Seed eggNOG ortholog1278307.KB906980_gene4106
Preferred namecadC
KEGG koko:K03765
GOsGO:0005575,GO:0005623,GO:0005886,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0044464,GO:0045893,GO:0045935,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0071944,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.Transcriptional regulatory protein, C terminal
EggNOG OGs1QIBE@1224,1TG5M@1236,2QHHH@267894,COG0745@1,COG0745@2,COG3710@1,COG3710@2
COG Functional cat.K
Best tax levelPsychromonadaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817301.0033827-CDS-P-canaliculata_contig93176:804..11701622817301.0033827-CDS-P-canaliculata_contig93176:804..1170Pelvetia canaliculata dioeciousCDSP-canaliculata_contig93176 805..1170 +
1693495208.9457123-CDS-P-canaliculata_contig93176:804..11701693495208.9457123-CDS-P-canaliculata_contig93176:804..1170Pelvetia canaliculata dioeciousCDSP-canaliculata_contig93176 805..1170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-canaliculata_contig93176.23328.1prot_P-canaliculata_contig93176.23328.1Pelvetia canaliculata dioeciouspolypeptideP-canaliculata_contig93176 805..1170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-canaliculata_contig93176.23328.1

>prot_P-canaliculata_contig93176.23328.1 ID=prot_P-canaliculata_contig93176.23328.1|Name=mRNA_P-canaliculata_contig93176.23328.1|organism=Pelvetia canaliculata dioecious|type=polypeptide|length=122bp
MGTIMLEKSLVVGEFHIDTSQNSLIHGNRKVYLGPLRTSLLHFLCKNVNT
VVTREDLAQHVWGRLVTDHTINQHISQLRKSVGTLSLHGLNISTIPKRGY
IARMEGLTVSESTVLPMAQGDV
back to top

mRNA from alignment at P-canaliculata_contig93176:805..1170+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-canaliculata_contig93176.23328.1 ID=mRNA_P-canaliculata_contig93176.23328.1|Name=mRNA_P-canaliculata_contig93176.23328.1|organism=Pelvetia canaliculata dioecious|type=mRNA|length=366bp|location=Sequence derived from alignment at P-canaliculata_contig93176:805..1170+ (Pelvetia canaliculata dioecious)
ATGGGAACTATTATGTTAGAAAAAAGCTTAGTTGTGGGTGAATTCCACAT
TGATACGAGTCAAAATAGTTTGATTCATGGAAATCGTAAAGTTTATTTAG
GACCTTTACGTACATCACTTTTGCATTTTTTATGCAAAAATGTAAATACT
GTCGTTACGCGTGAAGATCTTGCTCAACACGTTTGGGGGCGTTTGGTGAC
TGATCATACGATCAATCAACATATCTCTCAATTACGTAAGAGTGTTGGCA
CTTTAAGTCTTCATGGGTTGAATATCTCTACTATCCCTAAACGTGGTTAC
ATCGCACGTATGGAAGGTCTTACTGTCTCTGAAAGCACAGTTTTACCGAT
GGCACAAGGTGATGTA
back to top

Coding sequence (CDS) from alignment at P-canaliculata_contig93176:805..1170+

>mRNA_P-canaliculata_contig93176.23328.1 ID=mRNA_P-canaliculata_contig93176.23328.1|Name=mRNA_P-canaliculata_contig93176.23328.1|organism=Pelvetia canaliculata dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at P-canaliculata_contig93176:805..1170+ (Pelvetia canaliculata dioecious)
ATGGGAACTATTATGTTAGAAAAAAGCTTAGTTGTGGGTGAATTCCACAT
TGATACGAGTCAAAATAGTTTGATTCATGGAAATCGTAAAGTTTATTTAG
GACCTTTACGTACATCACTTTTGCATTTTTTATGCAAAAATGTAAATACT
GTCGTTACGCGTGAAGATCTTGCTCAACACGTTTGGGGGCGTTTGGTGAC
TGATCATACGATCAATCAACATATCTCTCAATTACGTAAGAGTGTTGGCA
CTTTAAGTCTTCATGGGTTGAATATCTCTACTATCCCTAAACGTGGTTAC
ATCGCACGTATGGAAGGTCTTACTGTCTCTGAAAGCACAGTTTTACCGAT
GGCACAAGGTGATGTAATGGGAACTATTATGTTAGAAAAAAGCTTAGTTG
TGGGTGAATTCCACATTGATACGAGTCAAAATAGTTTGATTCATGGAAAT
CGTAAAGTTTATTTAGGACCTTTACGTACATCACTTTTGCATTTTTTATG
CAAAAATGTAAATACTGTCGTTACGCGTGAAGATCTTGCTCAACACGTTT
GGGGGCGTTTGGTGACTGATCATACGATCAATCAACATATCTCTCAATTA
CGTAAGAGTGTTGGCACTTTAAGTCTTCATGGGTTGAATATCTCTACTAT
CCCTAAACGTGGTTACATCGCACGTATGGAAGGTCTTACTGTCTCTGAAA
GCACAGTTTTACCGATGGCACAAGGTGATGTA
back to top